Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0020440

Physical Location & Seq

Genomic Coordinates Forward (+)

19271460 .. 19272417

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTGCAGATCAATCGATTGAGAGAGAGAGTCTTGACAGGATTGACCTGCTTCTTCCGGGACAGCAAACACTCCTCGTAACAGAAGTTGCAAAGGCAGCAAAAGGCCCAGTAATCCTTGTCATAATGTCTGGAGGAGGGTTCGACATTACATTTGCCAAAAACGATACTAAAATTACAAGCATACTTTGGGTTGGTTACCCCGGCGAAGCTGGTGGAGCTGCGGTAGCTGATGTAGTTTTTGGTCAATATAATCCAAGCGGGAGACTACCTATGACATGGTATCCACAATCTTATGTAGACAAGGTTCCAATGACAAACATGAACATGAGACCGGATCCTTCGAACGGTTACCCTGGCCGGACTTACAGATTTTACACTGGTGAAACCGTTTACTCCTTTGGAGATGGACTAGGCTACTCTGCCTTCAATCACAAACTAGTTCGAGCGCCTAAGCTGGTATCGATTCCCTTAGAAGAGGGTCATGTATGTCACTCGTCAAGCTGCAAGTCACTTGACGTTGTGGAAGAAAGATGCGAAAACCTAGCTTTTGATATACATTTGGGGGTGAAGAACATGGGAAGGATGAGTGGAGGTCATACGGTGATGTTGTTTTCGAGTCCTCCGGCAGTGCACAAGTCGCCGCAGAAGCACTTGTTGGGTTTTGAGAAGGTGTTCGTGAGTGCTCGGAGAGAAGCATTGGTTAAGTTCAACGTGGATGTTTGCAAGCACCTGAGTGTGGTCGATGAGCTTGGAAACAGAAAGGTTGCTTTGGGAGAGCATGTGCTTCATGTGGGAAGCTTGAAACACTCTTTCAGCGTTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

277

Amino Acids

30.21

Weight (kDa)

8.28

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020440)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g19250
rosa_laevigata	RLG00000001953
rosa_roxburghii	Rroxscaffold_3G00235430
rosa_samantha	Rh5BG526300 Rh7AG372600 Rh7CG390900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	3 cut(s)	224, 261, 644
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	347, 739
AgsI	TTSAA	3 cut(s)	430, 712, 805
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AleI	CACNNNNGTG	1 cut(s)	735
AluBI	AGCT	8 cut(s)	212, 221, 230, 457, 504, 548, 751, 801
AluI	AGCT	8 cut(s)	212, 221, 230, 457, 504, 548, 751, 801
Alw21I	GWGCWC	2 cut(s)	636, 688
Alw26I	GTCTC	2 cut(s)	259, 325
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	2 cut(s)	106, 358
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	3 cut(s)	98, 221, 504
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	60, 204
AsuHPI	GGTGA	3 cut(s)	395, 580, 616
AsuII	TTCGAA	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	636
BamHI	GGATCC	1 cut(s)	337
Bbv12I	GWGCWC	2 cut(s)	636, 688
BbvI	GCAGC	3 cut(s)	110, 208, 491
BccI	CCATC	1 cut(s)	401
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	60, 204
BcoDI	GTCTC	2 cut(s)	259, 325
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	3 cut(s)	413, 440, 545
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	99, 222, 505, 644
BlsI	GCNGC	4 cut(s)	100, 223, 506, 645
Bme1390I	CCNGG	3 cut(s)	60, 204, 357
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	309, 339
BmrFI	CCNGG	3 cut(s)	60, 204, 357
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	60, 204
Bsa29I	ATCGAT	2 cut(s)	17, 464
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	202, 355
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 768, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 739
Bse1I	ACTGG	2 cut(s)	110, 385
BseBI	CCWGG	1 cut(s)	357
BseCI	ATCGAT	2 cut(s)	17, 464
BseDI	CCNNGG	2 cut(s)	202, 355
BseGI	GGATG	2 cut(s)	591, 724
BseLI	CCNNNNNNNGG	2 cut(s)	347, 739
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	110, 385
BseRI	GAGGAG	2 cut(s)	65, 150
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	3 cut(s)	110, 208, 491
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	108, 360
BshVI	ATCGAT	2 cut(s)	17, 464
BsiHKAI	GWGCWC	2 cut(s)	636, 688
BsiSI	CCGG	5 cut(s)	59, 204, 335, 361, 626
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	347, 739
BsmAI	GTCTC	2 cut(s)	259, 325
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	108, 360
Bso31I	GGTCTC	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	636, 688
Bsp143I	GATC	2 cut(s)	10, 337
BspACI	CCGC	3 cut(s)	224, 261, 644
BspANI	GGCC	2 cut(s)	108, 360
BspCNI	CTCAG	1 cut(s)	726
BspDI	ATCGAT	2 cut(s)	17, 464
BspLI	GGNNCC	2 cut(s)	309, 339
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	332, 345
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	110, 385
BssECI	CCNNGG	2 cut(s)	202, 355
BssMI	GATC	2 cut(s)	10, 337
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	350, 391, 604
Bst6I	CTCTTC	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	728
BstDEI	CTNAG	3 cut(s)	453, 472, 734
BstEII	GGTNACC	2 cut(s)	197, 350
BstF5I	GGATG	2 cut(s)	591, 724
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	13, 340
BstMAI	GTCTC	2 cut(s)	259, 325
BstMBI	GATC	2 cut(s)	10, 337
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 218, 227, 640, 649
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	785
BstPI	GGTNACC	2 cut(s)	197, 350
BstSCI	CCNGG	3 cut(s)	58, 202, 355
BstSLI	GKGCMC	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	110, 208, 491
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	2 cut(s)	17, 464
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	108, 360
BsuTUI	ATCGAT	2 cut(s)	17, 464
BtsCI	GGATG	2 cut(s)	591, 724
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	378, 636
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	728
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	2 cut(s)	17, 464
CviAII	CATG	7 cut(s)	279, 322, 328, 485, 577, 782, 791
DdeI	CTNAG	3 cut(s)	453, 472, 734
DpnI	GATC	2 cut(s)	12, 339
DpnII	GATC	2 cut(s)	10, 337
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	325
Eco91I	GGTNACC	2 cut(s)	197, 350
EcoO65I	GGTNACC	2 cut(s)	197, 350
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	7 cut(s)	282, 325, 331, 488, 580, 785, 794
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	7 cut(s)	278, 321, 327, 484, 576, 781, 790
FauI	CCCGC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	99, 222, 505, 644
FokI	GGATG	2 cut(s)	598, 731
Fsp4HI	GCNGC	4 cut(s)	99, 222, 505, 644
FspBI	CTAG	3 cut(s)	413, 440, 545
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	99, 222, 505, 644
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	108, 360
HapII	CCGG	5 cut(s)	59, 204, 335, 361, 626
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	7 cut(s)	282, 325, 331, 488, 580, 785, 794
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	3 cut(s)	31, 466, 619
HpaII	CCGG	5 cut(s)	59, 204, 335, 361, 626
HphI	GGTGA	3 cut(s)	395, 580, 616
Hpy166II	GTNNAC	3 cut(s)	301, 394, 634
Hpy188I	TCNGA	1 cut(s)	690
Hpy188III	TCNNGA	3 cut(s)	35, 132, 679
Hpy8I	GTNNAC	3 cut(s)	301, 394, 634
HpyAV	CCTTC	4 cut(s)	351, 436, 576, 664
HpyCH4III	ACNGT	3 cut(s)	350, 391, 604
HpyCH4IV	ACGT	2 cut(s)	519, 714
HpyCH4V	TGCA	5 cut(s)	8, 92, 507, 634, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 218, 227, 640, 649
HpyF3I	CTNAG	3 cut(s)	453, 472, 734
HpySE526I	ACGT	2 cut(s)	519, 714
Hsp92II	CATG	7 cut(s)	282, 325, 331, 488, 580, 785, 794
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	10, 337
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	3 cut(s)	110, 208, 491
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	3 cut(s)	413, 440, 545
MaeII	ACGT	2 cut(s)	519, 714
MaeIII	GTNAC	5 cut(s)	79, 197, 350, 491, 510
MalI	GATC	2 cut(s)	12, 339
MboI	GATC	2 cut(s)	10, 337
MboII	GAAGA	4 cut(s)	47, 488, 539, 583
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	636, 688
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	40, 628
MnlI	CCTC	6 cut(s)	86, 128, 131, 472, 587, 633
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	2 cut(s)	326, 735
MspI	CCGG	5 cut(s)	59, 204, 335, 361, 626
MspR9I	CCNGG	3 cut(s)	60, 204, 357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	5 cut(s)	98, 218, 227, 640, 649
NciI	CCSGG	2 cut(s)	60, 204
NdeII	GATC	2 cut(s)	10, 337
NlaIII	CATG	7 cut(s)	282, 325, 331, 488, 580, 785, 794
NlaIV	GGNNCC	2 cut(s)	309, 339
NmuCI	GTSAC	2 cut(s)	491, 510
NspI	RCATGY	1 cut(s)	785
NspV	TTCGAA	1 cut(s)	344
OliI	CACNNNNGTG	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	100, 223, 506, 645
PleI	GAGTC	2 cut(s)	39, 627
PpsI	GAGTC	2 cut(s)	39, 627
Psp6I	CCWGG	1 cut(s)	355
PspEI	GGTNACC	2 cut(s)	197, 350
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	309, 339
PspPI	GGNCC	1 cut(s)	107
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	326, 735
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	4 cut(s)	99, 222, 505, 644
Sau3AI	GATC	2 cut(s)	10, 337
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	40, 628
ScrFI	CCNGG	3 cut(s)	60, 204, 357
SduI	GDGCHC	2 cut(s)	636, 688
SfaNI	GCATC	1 cut(s)	524
SfuI	TTCGAA	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	326, 735
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	3 cut(s)	224, 261, 644
SspMI	CTAG	3 cut(s)	413, 440, 545
StyD4I	CCNGG	3 cut(s)	58, 202, 355
TaaI	ACNGT	3 cut(s)	350, 391, 604
TaiI	ACGT	2 cut(s)	522, 717
TaqI	TCGA	7 cut(s)	17, 144, 344, 445, 464, 617, 744
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	385, 636
TseFI	GTSAC	2 cut(s)	491, 510
TseI	GCWGC	3 cut(s)	98, 221, 504
Tsp45I	GTSAC	2 cut(s)	491, 510
TspDTI	ATGAA	2 cut(s)	338, 779
TspRI	CASTG	2 cut(s)	385, 636
VneI	GTGCAC	1 cut(s)	632
XceI	RCATGY	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	3 cut(s)	413, 440, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.