Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0020440

Physical Location & Seq

Genomic Coordinates Reverse (-)

23438803 .. 23440127

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGACTGCTGGCTGTAGTGCAGCTTTCTTTCAATGTGATGAGAGCCCCATTTTCTTTCTTGACGTCTATGGTTTTCTGGTACAAATTGAGTCATCAGAAGATGTTGTGCCTCTGTTTCACATTGTGCTTCAGTTTTCCCCTGCTTTGAGTTTTTCTTTGTCTGAGATTTGCTGTGTGACACCCCAGCAGTCCAGCGCTTATGTGCATCATAGCTCTCTCCAGGACAGCGGACACTGGAAGCTTGATCTCTTCAGAAGGTTCGATATGTCATGGGTGAAAATTTCTGGGAGAGGCGAACAATCTTATGCAGCAGTCGTGGACATGGTTCGTATGACAAACATGAATATAAGACCAGATCCTCCAAATGGCAGGACTTACTATTATTTGCATAACCGCGAAGTTCAAGCGTCGAAGCAAGTATCCATTCCCTTGGAGAAGGATCATTTATGCGGCTATTCCATTCAATCAAGTTGGAAACCATTTGAAGTTGTTGAAAACAGATGTAAGAATACAGCGTTTGATATCCAATTGAGGGTGAAGAACATGGGAAGAATGAGTGGAAGGCTGGAAGCCAAAGCTACTGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

198

Amino Acids

22.36

Weight (kDa)

6.58

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020440)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g19250
rosa_laevigata	RLG00000001953
rosa_roxburghii	Rroxscaffold_3G00235430
rosa_samantha	Rh5BG526300 Rh7AG372600 Rh7CG390900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	399
AciI	CCGC	3 cut(s)	231, 397, 453
AclWI	GGATC	2 cut(s)	353, 450
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	116, 238
AcyI	GRCGYC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	368, 535
AgsI	TTSAA	5 cut(s)	35, 407, 467, 488, 497
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	26, 216, 244, 581
AluI	AGCT	4 cut(s)	26, 216, 244, 581
AlwI	GGATC	2 cut(s)	353, 450
Aor51HI	AGCGCT	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	23, 311
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	289, 550
BanII	GRGCYC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	35, 323
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	3 cut(s)	24, 312, 454
BlsI	GCNGC	3 cut(s)	25, 313, 455
Bme1390I	CCNGG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 535
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	368, 535
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	35, 323
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	368, 535
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	247, 358, 442
BspACI	CCGC	3 cut(s)	231, 397, 453
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	590
BspPI	GGATC	2 cut(s)	353, 450
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	247, 358, 442
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	250, 361, 445
BstMBI	GATC	3 cut(s)	247, 358, 442
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	35, 323
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	590
CfoI	GCGC	1 cut(s)	200
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	273, 325, 343, 547, 591
CviJI	RGCY	9 cut(s)	15, 26, 48, 216, 244, 456, 568, 575, 581
CviKI_1	RGCY	9 cut(s)	15, 26, 48, 216, 244, 456, 568, 575, 581
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	3 cut(s)	249, 360, 444
DpnII	GATC	3 cut(s)	247, 358, 442
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	526
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	116, 238
EcoRII	CCWGG	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	5 cut(s)	276, 328, 346, 550, 594
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	272, 324, 342, 546, 590
Fnu4HI	GCNGC	3 cut(s)	24, 312, 454
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	24, 312, 454
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	24, 312, 454
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	201
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	276, 328, 346, 550, 594
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	289, 550
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	100, 166, 257
Hpy188III	TCNNGA	2 cut(s)	62, 591
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	252, 433, 558
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	23, 208, 311, 391
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	276, 328, 346, 550, 594
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	247, 358, 442
Lsp1109I	GCAGC	2 cut(s)	35, 323
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	249, 360, 444
MboI	GATC	3 cut(s)	247, 358, 442
MboII	GAAGA	4 cut(s)	113, 244, 553, 564
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	3 cut(s)	87, 282, 530
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	123, 287, 372, 528
MspA1I	CMGCKG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	399
NdeII	GATC	3 cut(s)	247, 358, 442
NlaIII	CATG	5 cut(s)	276, 328, 346, 550, 594
NmuCI	GTSAC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	25, 313, 455
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	3 cut(s)	24, 312, 454
Sau3AI	GATC	3 cut(s)	247, 358, 442
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	6 cut(s)	28, 69, 218, 246, 263, 583
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	87, 282, 530
SsiI	CCGC	3 cut(s)	231, 397, 453
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	264, 413
TasI	AATT	3 cut(s)	87, 282, 530
TauI	GCSGC	1 cut(s)	456
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	23, 311
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	359, 579
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.