Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0020440

Physical Location & Seq

Genomic Coordinates Forward (+)

48103479 .. 48104731

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGGTTATAGGTCCCAATAGCAATGCCACAAACACTATGATTGGCAACTACGCAGGCACCCCTTGCAACTATACAACTCCTTTGCAAGGCCTAACAGCCGTAGTTTCCACAACTTTGGTGGCTGGGTGCGTTAATGTGGCTTGTGGCACTGCCCAGGTAGATGATGCTACCAAGTTAGCAGAAACAGCAGATGCAACTGTACTTATAGTGGGTGCAGATCTATCAATAGAGGCAGAGAGTCATGATAGAACCGACCTCTATCTTCCAGGACAGCAAACTCTTCTAATAACTGAAGTAGCGAAGGCTTCTAAAGGACCTGTAATCCTTGTCATAATGTCCGGAGGAGGGTTCGATATTACCTTTGCAAAAAATGATGATAAAATTACAAGCATTCTATGGGTTGGTTACCCCGGCGAAGCTGGTGGAGCTGCCATTGCTGACGTTATTTTTGGCTTTTATAATCCAAGTGGAAGACTACCCATGACGTGGTATCCACAAGCTTATTTAGACAAGGTCCCTATGACAAACATGAATATGAGACCTGATCCTGCCAGTGGATACCCGGGCAGGACATACCGGTTTTACACTGGTGACACGGTTTATGCATTTGGATACGGAATAAGCTACTCCACCTTCAATCACCGCCTAGTTCGAGCACCGAAGCAAGTTTCTATTCCCTTAGAGGAGGATCATGTATGCCACTCATCAAATTGCCAATCACTTGACGTTGTAGAAGAAAGGTGTCAAAATCTAGCTTTCGATATCCATTTGGGGGTGAAAAACATGGGCAAAATGACTGGAAGTCATACAGTCTTATTGTATTCGAGTCCTCCATCTGTGCACAATTCTCCTAAAAAGCACTTGTTGGGATTCGAGAAGGTGTTCCTTAGCTCTCAGGGAGAAGCATTGGTCAAGTTCAATGTGGATGTTTGCAAGCACTTGAGTGTGGTTGATGAGCGAGGAAAAAGGAAAGTTGCTTTGGGAGATCATGTACTACATGTGGGGGACTTGAAACAGACATTGAGTGTGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

346

Amino Acids

37.29

Weight (kDa)

6.25

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	2 - 210	9.7e-43	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	270 - 337	2.9e-11	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020440)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g19250
rosa_laevigata	RLG00000001953
rosa_roxburghii	Rroxscaffold_3G00235430
rosa_samantha	Rh5BG526300 Rh7AG372600 Rh7CG390900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	2 cut(s)	5, 646
AclWI	GGATC	2 cut(s)	542, 699
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	204, 996
AfiI	CCNNNNNNNGG	5 cut(s)	89, 348, 489, 557, 775
AflIII	ACRYGT	1 cut(s)	1000
AgeI	ACCGGT	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	640, 922, 1015
AhdI	GACNNNNNGTC	1 cut(s)	804
AjiI	CACGTC	1 cut(s)	489
AjnI	CCWGG	2 cut(s)	156, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AleI	CACNNNNGTG	1 cut(s)	945
AluBI	AGCT	6 cut(s)	422, 431, 503, 627, 758, 894
AluI	AGCT	6 cut(s)	422, 431, 503, 627, 758, 894
Alw21I	GWGCWC	2 cut(s)	661, 846
Alw26I	GTCTC	1 cut(s)	535
Alw44I	GTGCAC	1 cut(s)	842
AlwI	GGATC	2 cut(s)	542, 699
Ama87I	CYCGRG	1 cut(s)	565
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	842
ApeKI	GCWGC	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	884
AspS9I	GGNCC	3 cut(s)	14, 317, 517
AsuC2I	CCSGG	3 cut(s)	414, 566, 567
AsuHPI	GGTGA	3 cut(s)	605, 635, 790
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	3 cut(s)	14, 317, 517
BaeGI	GKGCMC	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	2 cut(s)	661, 846
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	844
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	158, 270
BciVI	GTATCC	3 cut(s)	504, 554, 608
BcnI	CCSGG	3 cut(s)	414, 566, 567
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	2 cut(s)	650, 755
BfuI	GTATCC	3 cut(s)	504, 554, 608
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	5 cut(s)	158, 270, 414, 566, 567
Bme18I	GGWCC	3 cut(s)	14, 317, 517
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmeT110I	CYCGRG	1 cut(s)	565
BmgBI	CACGTC	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	14, 317, 517
BmiI	GGNNCC	3 cut(s)	16, 61, 519
BmrFI	CCNGG	5 cut(s)	158, 270, 414, 566, 567
BmsI	GCATC	2 cut(s)	157, 184
BpiI	GAAGAC	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	1 cut(s)	964
BpuMI	CCSGG	3 cut(s)	414, 566, 567
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	156, 412, 565
BsaWI	WCCGGW	2 cut(s)	341, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 348, 489, 557, 775
Bse118I	RCCGGY	1 cut(s)	579
Bse1I	ACTGG	3 cut(s)	555, 595, 805
Bse3DI	GCAATG	2 cut(s)	31, 435
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	158, 270
BseDI	CCNNGG	3 cut(s)	156, 412, 565
BseGI	GGATG	1 cut(s)	934
BseLI	CCNNNNNNNGG	5 cut(s)	89, 348, 489, 557, 775
BseMI	GCAATG	2 cut(s)	31, 435
BseMII	CTCAG	1 cut(s)	911
BseNI	ACTGG	3 cut(s)	555, 595, 805
BseRI	GAGGAG	2 cut(s)	360, 701
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	59
BshTI	ACCGGT	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	661, 846
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	4 cut(s)	342, 414, 566, 580
BslFI	GGGAC	2 cut(s)	503, 1022
BslI	CCNNNNNNNGG	5 cut(s)	89, 348, 489, 557, 775
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	2 cut(s)	503, 1022
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	661, 846
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	220, 547, 691, 988
BspACI	CCGC	2 cut(s)	5, 646
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	910
BspEI	TCCGGA	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	16, 61, 519
BspPI	GGATC	2 cut(s)	542, 699
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	2 cut(s)	31, 435
BsrFI	RCCGGY	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	555, 595, 805
BssAI	RCCGGY	1 cut(s)	579
BssECI	CCNNGG	3 cut(s)	156, 412, 565
BssMI	GATC	4 cut(s)	220, 547, 691, 988
Bst2UI	CCWGG	2 cut(s)	158, 270
Bst4CI	ACNGT	3 cut(s)	202, 601, 814
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	58, 938
BstDEI	CTNAG	3 cut(s)	682, 890, 897
BstEII	GGTNACC	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	934
BstKTI	GATC	4 cut(s)	223, 550, 694, 991
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	220, 547, 691, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 188, 428, 437
BstNI	CCWGG	2 cut(s)	158, 270
BstNSI	RCATGY	1 cut(s)	1004
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	5 cut(s)	156, 268, 412, 564, 565
BstSLI	GKGCMC	1 cut(s)	846
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	3 cut(s)	504, 554, 608
BsuRI	GGCC	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	934
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 562, 588
Cac8I	GCNNGC	2 cut(s)	58, 938
CciI	TCATGA	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	14, 317, 517
Cfr9I	CCCGGG	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	203, 995
CspAI	ACCGGT	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	7 cut(s)	245, 484, 532, 695, 787, 992, 1001
CviQI	GTAC	2 cut(s)	203, 995
DdeI	CTNAG	3 cut(s)	682, 890, 897
DpnI	GATC	4 cut(s)	222, 549, 693, 990
DpnII	GATC	4 cut(s)	220, 547, 691, 988
DriI	GACNNNNNGTC	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	3 cut(s)	14, 317, 517
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	565
Eco91I	GGTNACC	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	3 cut(s)	14, 317, 517
EcoO65I	GGTNACC	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	156, 268
EcoRV	GATATC	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	7 cut(s)	248, 487, 535, 698, 790, 995, 1004
FaqI	GGGAC	2 cut(s)	503, 1022
FatI	CATG	7 cut(s)	244, 483, 531, 694, 786, 991, 1000
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	941
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	650, 755
GluI	GCNGC	1 cut(s)	432
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	4 cut(s)	342, 414, 566, 580
Hin1II	CATG	7 cut(s)	248, 487, 535, 698, 790, 995, 1004
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	241, 829, 873
HpaII	CCGG	4 cut(s)	342, 414, 566, 580
HphI	GGTGA	3 cut(s)	605, 635, 790
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188III	TCNNGA	3 cut(s)	245, 342, 877
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	298, 646, 874
HpyCH4III	ACNGT	3 cut(s)	202, 601, 814
HpyCH4IV	ACGT	3 cut(s)	444, 488, 729
HpyCH4V	TGCA	8 cut(s)	69, 88, 197, 218, 368, 608, 844, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 188, 428, 437
HpyF3I	CTNAG	3 cut(s)	682, 890, 897
HpySE526I	ACGT	3 cut(s)	444, 488, 729
Hsp92II	CATG	7 cut(s)	248, 487, 535, 698, 790, 995, 1004
Kpn2I	TCCGGA	1 cut(s)	341
Kzo9I	GATC	4 cut(s)	220, 547, 691, 988
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	157, 184
MaeI	CTAG	2 cut(s)	650, 755
MaeII	ACGT	3 cut(s)	444, 488, 729
MaeIII	GTNAC	2 cut(s)	407, 593
MalI	GATC	4 cut(s)	222, 549, 693, 990
MboI	GATC	4 cut(s)	220, 547, 691, 988
MboII	GAAGA	4 cut(s)	257, 275, 486, 749
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	661, 846
MluCI	AATT	3 cut(s)	384, 712, 847
MlyI	GAGTC	2 cut(s)	250, 838
MnlI	CCTC	9 cut(s)	226, 269, 338, 341, 679, 682, 843, 956, 1026
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	536, 945
MspI	CCGG	4 cut(s)	342, 414, 566, 580
MspR9I	CCNGG	5 cut(s)	158, 270, 414, 566, 567
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	158, 270
MwoI	GCNNNNNNNGC	4 cut(s)	66, 188, 428, 437
NciI	CCSGG	3 cut(s)	414, 566, 567
NdeII	GATC	4 cut(s)	220, 547, 691, 988
NlaIII	CATG	7 cut(s)	248, 487, 535, 698, 790, 995, 1004
NlaIV	GGNNCC	3 cut(s)	16, 61, 519
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	1004
OliI	CACNNNNGTG	1 cut(s)	945
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	93
PciI	ACATGT	1 cut(s)	1000
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	873
PflFI	GACNNNGTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	489
PfoI	TCCNGGA	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	579
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	2 cut(s)	249, 837
PpsI	GAGTC	2 cut(s)	249, 837
PpuMI	RGGWCCY	3 cut(s)	14, 317, 517
PscI	ACATGT	1 cut(s)	1000
PsiI	TTATAA	1 cut(s)	462
Psp5II	RGGWCCY	3 cut(s)	14, 317, 517
Psp6I	CCWGG	2 cut(s)	156, 268
PspEI	GGTNACC	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	156, 268
PspN4I	GGNNCC	3 cut(s)	16, 61, 519
PspPI	GGNCC	3 cut(s)	14, 317, 517
PspPPI	RGGWCCY	3 cut(s)	14, 317, 517
PsuI	RGATCY	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	2 cut(s)	204, 996
RsaNI	GTAC	2 cut(s)	203, 995
RseI	CAYNNNNRTG	2 cut(s)	536, 945
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	4 cut(s)	220, 547, 691, 988
Sau96I	GGNCC	3 cut(s)	14, 317, 517
SchI	GAGTC	2 cut(s)	250, 838
ScrFI	CCNGG	5 cut(s)	158, 270, 414, 566, 567
SduI	GDGCHC	2 cut(s)	661, 846
SfaNI	GCATC	2 cut(s)	157, 184
SinI	GGWCC	3 cut(s)	14, 317, 517
SmaI	CCCGGG	1 cut(s)	567
SmiMI	CAYNNNNRTG	2 cut(s)	536, 945
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	3 cut(s)	384, 712, 847
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	5, 646
SspMI	CTAG	2 cut(s)	650, 755
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	156, 268, 412, 564, 565
TaaI	ACNGT	3 cut(s)	202, 601, 814
TaiI	ACGT	3 cut(s)	447, 491, 732
TaqI	TCGA	5 cut(s)	354, 655, 762, 827, 876
TasI	AATT	3 cut(s)	384, 712, 847
TatI	WGTACW	2 cut(s)	202, 994
TfiI	GAWTC	1 cut(s)	873
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	3 cut(s)	157, 562, 595
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	548
TspGWI	ACGGA	1 cut(s)	633
TspMI	CCCGGG	1 cut(s)	565
TspRI	CASTG	3 cut(s)	157, 562, 595
Tth111I	GACNNNGTC	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	489
VneI	GTGCAC	1 cut(s)	842
VpaK11BI	GGWCC	3 cut(s)	14, 317, 517
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	650, 755
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.