pycom08g20230

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
20095071 .. 20102704
7634 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
ATGTTTAAGGAAAAAGATGGCTTCCAGGACCCAAACAGCGGCCAAAATTCCAGTAGTAGATTTCTCCCAAGAGGATTGCTGGAAGTCAGGGACAAGTTCTTGGCTCTTAGTAGAGACGTTTGTAATGCTCTCGAAGAGTTTGGCTGTTTCCTGGCAGTCCTTCCCAACAAAGTTTCACGGGAGCTTAATGACACCATGTTTGGGACATTCAAAGAGTTGTTTGATTTCCCCGACGAAATTAAAGCACAATTTCCTCAGGATAAACCGCTAGTTGAGGGTTACGTAAGGCTGGCTACCCGTGAATCCATGTCATTTCGTTCAAGCACTGAAAAAATAAAGAACGTCACACATCAACTTTGGCCGGAAGGAAATGACCAGTTTCGTGAGAGTGCTGATCTGTATTCAAAAGTGATGACAGAATTAAATCAAGTTGTGACAAAAATGGTATTTGAAAACTACAAGGTAGGGAAATACCACGATGATCACATTCAATCGACCATGCCCATTACCCTACTTTTAAAATATGATGAACCCAAGACAGATGAAACTGAAACTGTTCTACACAATCATACAGACAAGTGTTTTACTACCATACTCCATCAAGAATCGTATGGTGTTGAGATAAGCACAAAAGATAACGAGTGGATTGGTTATGATCCTCTGCCTTCATCATTATTATTCCTAGCTGGTGATGGACTTCAGGTTTGGAGTAACGACAGAATACAATCTTGTATGCACAAAGTCGTTTTGAAGGAAAATAAGGTAAGATACTCGTTCGGACAATTCTTTTGGAACAAAGGAGTGATATATGTACCAAATGAGCTTACGGACGAGGACCACCCCATGCAGTATAAGCCAATAGACCTAGTGGAATATTTTCAATATTATTATGAAAATATGTCCAACTTGGGATTTGATTTTTCGGTCAAGGACTACTGTGGGAAGCATGACCCCACAAGCATGAGTTTGAAAGGGGGTGTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

330

Amino Acids

38.15

Weight (kDa)

5.21

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 35 - 101 3.7e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 172 - 261 4.8e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021180)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 266
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 2 cut(s) 40, 359
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 2 cut(s) 38, 201
AgsI TTSAA 8 cut(s) 211, 321, 405, 452, 491, 751, 881, 970
AjnI CCWGG 2 cut(s) 24, 150
AluBI AGCT 3 cut(s) 184, 686, 823
AluI AGCT 3 cut(s) 184, 686, 823
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 650
AoxI GGCC 2 cut(s) 40, 359
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 6 cut(s) 182, 214, 687, 719, 771, 803
Asp700I GAANNNNTTC 2 cut(s) 555, 876
AspS9I GGNCC 2 cut(s) 28, 835
AsuHPI GGTGA 1 cut(s) 701
AvaII GGWCC 2 cut(s) 28, 835
AxyI CCTNAGG 1 cut(s) 255
BccI CCATC 3 cut(s) 11, 606, 686
BciT130I CCWGG 2 cut(s) 26, 152
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 3 cut(s) 269, 683, 866
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 26, 152
Bme18I GGWCC 2 cut(s) 28, 835
BmgT120I GGNCC 2 cut(s) 28, 835
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 26, 152
BsaAI YACGTR 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 201
Bse1I ACTGG 2 cut(s) 51, 376
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 26, 152
BseLI CCNNNNNNNGG 2 cut(s) 38, 201
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 51, 376
BshFI GGCC 2 cut(s) 42, 361
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 2 cut(s) 104, 217
BslI CCNNNNNNNGG 2 cut(s) 38, 201
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 2 cut(s) 104, 217
BsnI GGCC 2 cut(s) 42, 361
Bsp143I GATC 3 cut(s) 394, 481, 655
BspACI CCGC 2 cut(s) 39, 266
BspANI GGCC 2 cut(s) 42, 361
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 650
BsrI ACTGG 2 cut(s) 51, 376
BssMI GATC 3 cut(s) 394, 481, 655
Bst2UI CCWGG 2 cut(s) 26, 152
Bst4CI ACNGT 2 cut(s) 556, 938
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 107, 255
BstKTI GATC 3 cut(s) 397, 484, 658
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 394, 481, 655
BstMWI GCNNNNNNNGC 1 cut(s) 853
BstNI CCWGG 2 cut(s) 26, 152
BstSCI CCNGG 2 cut(s) 24, 150
BstSNI TACGTA 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 42, 361
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 28, 835
Csp6I GTAC 1 cut(s) 812
CviAII CATG 6 cut(s) 196, 307, 499, 844, 947, 961
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 2 cut(s) 107, 255
DpnI GATC 3 cut(s) 396, 483, 657
DpnII GATC 3 cut(s) 394, 481, 655
DraI TTTAAA 1 cut(s) 519
EaeI YGGCCR 2 cut(s) 40, 359
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco105I TACGTA 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 28, 835
Eco57I CTGAAG 1 cut(s) 683
Eco81I CCTNAGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 24, 150
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 6 cut(s) 199, 310, 502, 847, 950, 964
FaqI GGGAC 2 cut(s) 104, 217
FatI CATG 6 cut(s) 195, 306, 498, 843, 946, 960
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 3 cut(s) 269, 683, 866
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 42, 361
HapII CCGG 1 cut(s) 362
Hin1II CATG 6 cut(s) 199, 310, 502, 847, 950, 964
HinfI GANTC 2 cut(s) 302, 605
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 701
Hpy188I TCNGA 1 cut(s) 779
Hpy188III TCNNGA 4 cut(s) 131, 257, 383, 602
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 4 cut(s) 170, 359, 675, 745
HpyCH4III ACNGT 2 cut(s) 556, 938
HpyCH4IV ACGT 3 cut(s) 117, 282, 342
HpyCH4V TGCA 2 cut(s) 736, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 853
HpyF3I CTNAG 2 cut(s) 107, 255
HpySE526I ACGT 3 cut(s) 117, 282, 342
Hsp92II CATG 6 cut(s) 199, 310, 502, 847, 950, 964
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 394, 481, 655
LmnI GCTCC 1 cut(s) 181
MaeI CTAG 3 cut(s) 269, 683, 866
MaeII ACGT 3 cut(s) 117, 282, 342
MaeIII GTNAC 4 cut(s) 278, 343, 433, 710
MalI GATC 3 cut(s) 396, 483, 657
MboI GATC 3 cut(s) 394, 481, 655
MboII GAAGA 1 cut(s) 146
MluCI AATT 5 cut(s) 46, 237, 248, 419, 782
MmeI TCCRAC 2 cut(s) 927, 961
MnlI CCTC 5 cut(s) 65, 264, 268, 669, 826
MroXI GAANNNNTTC 2 cut(s) 555, 876
MseI TTAA 5 cut(s) 6, 186, 240, 422, 518
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 26, 152
MvaI CCWGG 2 cut(s) 26, 152
MwoI GCNNNNNNNGC 1 cut(s) 853
NdeII GATC 3 cut(s) 394, 481, 655
NlaIII CATG 6 cut(s) 199, 310, 502, 847, 950, 964
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 343, 433
PdmI GAANNNNTTC 2 cut(s) 555, 876
PfeI GAWTC 2 cut(s) 302, 605
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 24, 150
PspGI CCWGG 2 cut(s) 24, 150
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 28, 835
PspPPI RGGWCCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 959
SaqAI TTAA 5 cut(s) 6, 186, 240, 422, 518
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 3 cut(s) 394, 481, 655
Sau96I GGNCC 2 cut(s) 28, 835
ScrFI CCNGG 2 cut(s) 26, 152
SinI GGWCC 2 cut(s) 28, 835
SmiMI CAYNNNNRTG 1 cut(s) 959
SnaBI TACGTA 1 cut(s) 283
Sse9I AATT 5 cut(s) 46, 237, 248, 419, 782
SsiI CCGC 2 cut(s) 39, 266
SspI AATATT 2 cut(s) 875, 884
SspMI CTAG 3 cut(s) 269, 683, 866
StyD4I CCNGG 2 cut(s) 24, 150
TaaI ACNGT 2 cut(s) 556, 938
TaiI ACGT 3 cut(s) 120, 285, 345
TaqI TCGA 2 cut(s) 132, 494
TaqII GACCGA 1 cut(s) 913
TasI AATT 5 cut(s) 46, 237, 248, 419, 782
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 302, 605
Tru1I TTAA 5 cut(s) 6, 186, 240, 422, 518
Tru9I TTAA 5 cut(s) 6, 186, 240, 422, 518
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 343, 433
Tsp45I GTSAC 2 cut(s) 343, 433
TspDTI ATGAA 4 cut(s) 543, 558, 657, 906
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 28, 835
XapI RAATTY 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 555, 876
XspI CTAG 3 cut(s) 269, 683, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.