Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0022547

Physical Location & Seq

Genomic Coordinates Reverse (-)

20311796 .. 20312053

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGACGTCGTCGGAGAGAGAAGAGAAGCCGACGAAGATGTTCGGGAAGCAATTGGCGGCGGCGGAGGACTTCGCGGCGGTGCGTGAGCTCTTCCGCCACCACATAGAGTCATTCGACTACCTTGTCACGAAGGGTCTCGAGGTTCTACTCAGCAAGATCAAGCCCATCGAAATCGTCGACCCTTCCACCAACAATACGCTTACAAATATCCTTTCTTTTATTTTCCTTGCATTTTTATCTGCAATTTGTTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

5.6

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022547)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20570
rosa_multiflora	Rmu_sc0000511.1_g000016 Rmu_sc0000511.1_g000027 Rmu_sc0003919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	74
AciI	CCGC	6 cut(s)	56, 59, 62, 74, 77, 94
AcyI	GRCGYC	1 cut(s)	5
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	57, 60, 75
BlsI	GCNGC	3 cut(s)	58, 61, 76
BmeT110I	CYCGRG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	6 cut(s)	56, 59, 62, 74, 77, 94
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	140
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	2 cut(s)	15, 95
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	74
CviJI	RGCY	3 cut(s)	28, 88, 163
CviKI_1	RGCY	3 cut(s)	28, 88, 163
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	15, 95
EarI	CTCTTC	2 cut(s)	15, 95
EciI	GGCGGA	2 cut(s)	77, 83
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	90
FaiI	YATR	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	57, 60, 75
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	57, 60, 75
GluI	GCNGC	3 cut(s)	57, 60, 75
Hin1I	GRCGYC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	43, 127, 137
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	4 cut(s)	10, 13, 34, 179
HpyAV	CCTTC	2 cut(s)	124, 192
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	230, 242
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	3 cut(s)	32, 46, 82
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	50, 243
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	58, 133
MroXI	GAANNNNTTC	1 cut(s)	38
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	74
NdeII	GATC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	58, 61, 76
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	90
PsyI	GACNNNGTC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	3 cut(s)	57, 60, 75
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	8, 90, 123, 144
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	50, 243
SsiI	CCGC	6 cut(s)	56, 59, 62, 74, 77, 94
SstI	GAGCTC	1 cut(s)	90
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	4 cut(s)	114, 138, 168, 177
TasI	AATT	2 cut(s)	50, 243
TauI	GCSGC	3 cut(s)	59, 62, 77
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.