Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000511.1

Orthogroup ID

OG0022547

Physical Location & Seq

Genomic Coordinates Forward (+)

95038 .. 96269

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000511.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcagcagaagaggagaacttccgccggagacttaacccacttgcgggagctgttccggcaccacatagagtccttcgactacctcatcaccgccggtctcggcgtcatgctccgccgacctcagaaggatcggagtagcgagcctctctattcttttgaatgtcgacagactcgaatttcctacacgggtaaattgttggcagacatttactttcagcgtgatgataaggctccggtcagagatatatgttttgcttttattgacactcctgatcgtgaaatttttgcgagtttgacatgctgttgtaacgagaaatttgagaaagaaaaaggtgctgttgccactcagcttgtgggtgagagggtgcaaattattataaatgtagtggcagacttgggtcttggcacccatcttcaatgtctagagcacattggcgaggactttcaacctctaatgggtggactggagaatgaaccttattcagttgtaagtcatgatctgcaaccttttactttccctatgttcctattaaggaatttgaaacagacaagctacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

187

Amino Acids

21.55

Weight (kDa)

6.07

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022547)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20570
rosa_multiflora	Rmu_sc0000511.1_g000016 Rmu_sc0000511.1_g000027 Rmu_sc0003919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	60, 407
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	4 cut(s)	24, 46, 93, 115
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	4 cut(s)	177, 282, 317, 538
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	45, 46, 458
AgsI	TTSAA	4 cut(s)	161, 419, 449, 544
AluBI	AGCT	3 cut(s)	52, 352, 555
AluI	AGCT	3 cut(s)	52, 352, 555
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	24, 104
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	4 cut(s)	177, 282, 317, 538
AsuHPI	GGTGA	2 cut(s)	82, 371
BanI	GGYRCC	2 cut(s)	60, 407
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	24, 104
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmiI	GGNNCC	3 cut(s)	62, 234, 409
BoxI	GACNNNNGTC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 46, 458
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	45, 46, 458
BseMII	CTCAG	2 cut(s)	137, 362
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	2 cut(s)	60, 407
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	4 cut(s)	27, 58, 96, 236
BslI	CCNNNNNNNGG	3 cut(s)	45, 46, 458
BsmAI	GTCTC	2 cut(s)	24, 104
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	130, 274, 499
BspACI	CCGC	4 cut(s)	24, 46, 93, 115
BspCNI	CTCAG	2 cut(s)	136, 361
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	62, 234, 409
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	2 cut(s)	60, 407
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	3 cut(s)	130, 274, 499
BssNI	GRCGYC	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	123, 348
BstKTI	GATC	3 cut(s)	133, 277, 502
BstMAI	GTCTC	2 cut(s)	24, 104
BstMBI	GATC	3 cut(s)	130, 274, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	303
BstPAI	GACNNNNGTC	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	95
CseI	GACGC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	109, 300, 497
CviJI	RGCY	5 cut(s)	52, 145, 233, 352, 555
CviKI_1	RGCY	5 cut(s)	52, 145, 233, 352, 555
DdeI	CTNAG	2 cut(s)	123, 348
DpnI	GATC	3 cut(s)	132, 276, 501
DpnII	GATC	3 cut(s)	130, 274, 499
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	2 cut(s)	13, 104
Eco31I	GGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	112, 303, 500
FaiI	YATR	8 cut(s)	68, 110, 248, 250, 301, 380, 498, 524
FatI	CATG	3 cut(s)	108, 299, 496
FauI	CCCGC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	488
HapII	CCGG	4 cut(s)	27, 58, 96, 236
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	112, 303, 500
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	71, 172
HpaII	CCGG	4 cut(s)	27, 58, 96, 236
HphI	GGTGA	2 cut(s)	82, 371
Hpy166II	GTNNAC	2 cut(s)	167, 464
Hpy188I	TCNGA	3 cut(s)	126, 135, 242
Hpy188III	TCNNGA	4 cut(s)	272, 278, 425, 497
Hpy8I	GTNNAC	2 cut(s)	167, 464
HpyAV	CCTTC	2 cut(s)	85, 121
HpyCH4V	TGCA	3 cut(s)	4, 370, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	123, 348
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	112, 303, 500
Kzo9I	GATC	3 cut(s)	130, 274, 499
LmnI	GCTCC	3 cut(s)	49, 117, 238
LpnPI	CCDG	6 cut(s)	40, 71, 109, 249, 285, 452
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	3 cut(s)	132, 276, 501
MboI	GATC	3 cut(s)	130, 274, 499
MboII	GAAGA	2 cut(s)	22, 407
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	6 cut(s)	177, 194, 282, 317, 372, 538
MlyI	GAGTC	2 cut(s)	80, 166
MnlI	CCTC	7 cut(s)	6, 95, 132, 156, 357, 433, 462
MseI	TTAA	2 cut(s)	35, 533
MspI	CCGG	4 cut(s)	27, 58, 96, 236
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	130, 274, 499
NlaIII	CATG	3 cut(s)	112, 303, 500
NlaIV	GGNNCC	3 cut(s)	62, 234, 409
NmeAIII	GCCGAG	1 cut(s)	81
NspI	RCATGY	1 cut(s)	303
PagI	TCATGA	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	79, 166
PpsI	GAGTC	2 cut(s)	79, 166
PshAI	GACNNNNGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	62, 234, 409
SalI	GTCGAC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	35, 533
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	130, 274, 499
SchI	GAGTC	2 cut(s)	80, 166
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	54, 87, 124, 337, 354, 454, 481, 511, 557
Sse9I	AATT	6 cut(s)	177, 194, 282, 317, 372, 538
SsiI	CCGC	4 cut(s)	24, 46, 93, 115
SspMI	CTAG	1 cut(s)	425
TaqI	TCGA	3 cut(s)	78, 166, 175
TasI	AATT	6 cut(s)	177, 194, 282, 317, 372, 538
Tru1I	TTAA	2 cut(s)	35, 533
Tru9I	TTAA	2 cut(s)	35, 533
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	489
XapI	RAATTY	4 cut(s)	177, 282, 317, 538
XbaI	TCTAGA	1 cut(s)	424
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.