Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003919.1

Orthogroup ID

OG0022547

Physical Location & Seq

Genomic Coordinates Reverse (-)

955 .. 3030

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003919.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcagcagaagaggagaacctccgccggagacttaagccacttgcgggagctgttccggcaccacatagagtccttcgattacctcatcaccgccggtctcggcgtcatgctccgtgacatcaagcccgtccaagtccacaatcctcacaccggagaaaccctaaggaatatcctttctttcatgattctattctctttgtttgtattgactggtgtgttgtgtatcaatgtagtgtcgacagactctaatttcctacacgggcaaattgctggcagacattactttcagcgtgatgataagactccgcttgtgggtgagagggtgcaaattattataaatgtagtggcagacttgggtcttggcacccatcttcaatgtctagagcacattggcgaggactttcaacctctaatgggtggactggagaatgaaccttattcagttagattaaatcctctggaccccgaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

158

Amino Acids

17.87

Weight (kDa)

5.94

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022547)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20570
rosa_multiflora	Rmu_sc0000511.1_g000016 Rmu_sc0000511.1_g000027 Rmu_sc0003919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	60, 365
AccI	GTMKAC	1 cut(s)	239
AciI	CCGC	4 cut(s)	24, 46, 93, 308
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	4 cut(s)	46, 152, 314, 416
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	377, 407
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	24, 104
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	82, 329
AvaII	GGWCC	1 cut(s)	463
AxyI	CCTNAGG	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	60, 365
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	24, 104
BfaI	CTAG	1 cut(s)	383
BfrI	CTTAAG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	62, 367, 465
BoxI	GACNNNNGTC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 152, 314, 416
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	217, 429
Bse21I	CCTNAGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	4 cut(s)	46, 152, 314, 416
BseNI	ACTGG	2 cut(s)	217, 429
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	2 cut(s)	60, 365
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	4 cut(s)	27, 58, 96, 153
BslI	CCNNNNNNNGG	4 cut(s)	46, 152, 314, 416
BsmAI	GTCTC	2 cut(s)	24, 104
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	390
BspACI	CCGC	4 cut(s)	24, 46, 93, 308
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	62, 367, 465
BspT107I	GGYRCC	2 cut(s)	60, 365
BspTI	CTTAAG	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	217, 429
BssAI	RCCGGY	1 cut(s)	95
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	24, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	274
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	109, 184
CviJI	RGCY	3 cut(s)	39, 52, 127
CviKI_1	RGCY	3 cut(s)	39, 52, 127
DdeI	CTNAG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	463
Eco81I	CCTNAGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	112, 187
FaiI	YATR	4 cut(s)	68, 110, 185, 338
FatI	CATG	2 cut(s)	108, 183
FauI	CCCGC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	446
HapII	CCGG	4 cut(s)	27, 58, 96, 153
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	112, 187
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	4 cut(s)	71, 187, 245, 304
HpaII	CCGG	4 cut(s)	27, 58, 96, 153
HphI	GGTGA	2 cut(s)	82, 329
Hpy166II	GTNNAC	3 cut(s)	139, 240, 422
Hpy188III	TCNNGA	3 cut(s)	184, 383, 461
Hpy8I	GTNNAC	3 cut(s)	139, 240, 422
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	2 cut(s)	4, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	112, 187
LmnI	GCTCC	2 cut(s)	49, 117
LpnPI	CCDG	8 cut(s)	40, 71, 109, 166, 198, 258, 410, 446
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	22, 365
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	250, 267, 330
MlyI	GAGTC	3 cut(s)	80, 239, 298
MnlI	CCTC	8 cut(s)	6, 31, 95, 156, 315, 391, 420, 468
MseI	TTAA	2 cut(s)	35, 452
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	4 cut(s)	27, 58, 96, 153
MwoI	GCNNNNNNNGC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	112, 187
NlaIV	GGNNCC	3 cut(s)	62, 367, 465
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	3 cut(s)	79, 239, 298
PpsI	GAGTC	3 cut(s)	79, 239, 298
PshAI	GACNNNNGTC	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	62, 367, 465
PspPI	GGNCC	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	35, 452
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	3 cut(s)	80, 239, 298
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	5 cut(s)	23, 54, 87, 412, 439
SinI	GGWCC	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	3 cut(s)	250, 267, 330
SsiI	CCGC	4 cut(s)	24, 46, 93, 308
SspMI	CTAG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	78, 239
TasI	AATT	3 cut(s)	250, 267, 330
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	35, 452
Tru9I	TTAA	2 cut(s)	35, 452
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	172, 447
TspGWI	ACGGA	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	463
XbaI	TCTAGA	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.