Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000511.1

Orthogroup ID

OG0022547

Physical Location & Seq

Genomic Coordinates Forward (+)

49992 .. 53162

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000511.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgcagcagaagaggagaacctccgccggagacttaagccacttgcgtgagctgttccggcaccacatagtcattcgattacctcatcaccgccggtctcggcgtcatgctccacattactttcagcgtgatgataagactccggtcagagatatatgttttgcttttattgacactcctgatcgtgaaatttttgcgagtttgacatgctgttgtaacgagaaatttgagaaagaaaaaggtgctgttgccactcagcttgtgggtgagagggtgcaaattattataaatgtagtggcagacttgggtcttggcacccatcttcaatgtctagagcacattggcgaggactttcaacctctaatgggtggactggagaatgaaccttattcagtttatgcccagtctgtgtggagatcagatgttgccgggatcaggtgttggttcgctgggttccggacgctatgtatgggaaggccggtggggattcagtggtttgcagcggcggtcgtggtcttcagggtgcgatctggtaggtctccgcctcggggtcttgtcagtggggatagatccgagcggttggattggctgggaagcggatttggattcgactcgccgttggtttggcttggttgtaggtcacggtcgtggaatgcagaggtaggggtgtggatggcggaaggcgggcgacgggattccaagggagcaaccggtgtgttagctattgggtcggtgcactgcaacttttggcatagacaatcttctcttcggcggtctagagggtcgttcctgttctggagttgggtcagcagcggtggtgaaaatgtctggctgtggcatactagcatagacaatcatccttggccttctagggggtcgttcctttctggtctcgggtctgatggtccagcatttcactttggtcgggttcgaagtcacaacgagtgtagactacttggtcaatcaaaggcaggtcaggaggactctgggtggcgagttagtgtcgacgaagttgtgagtttggcattcactgctcctgcgcaagttgtctctgacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

353

Amino Acids

39.72

Weight (kDa)

9.13

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022547)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20570
rosa_multiflora	Rmu_sc0000511.1_g000016 Rmu_sc0000511.1_g000027 Rmu_sc0003919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	957
Acc16I	TGCGCA	1 cut(s)	1041
Acc36I	ACCTGC	1 cut(s)	962
AccB1I	GGYRCC	2 cut(s)	60, 314
AccBSI	CCGCTC	1 cut(s)	577
AccI	GTMKAC	2 cut(s)	949, 1005
AccIII	TCCGGA	1 cut(s)	456
AclWI	GGATC	2 cut(s)	440, 564
AcsI	RAATTY	2 cut(s)	189, 224
AcuI	CTGAAG	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	103
AfiI	CCNNNNNNNGG	4 cut(s)	365, 435, 548, 872
AflII	CTTAAG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	710
AgsI	TTSAA	2 cut(s)	326, 356
AleI	CACNNNNGTG	2 cut(s)	45, 646
AluBI	AGCT	3 cut(s)	52, 259, 722
AluI	AGCT	3 cut(s)	52, 259, 722
Alw21I	GWGCWC	2 cut(s)	339, 738
Alw26I	GTCTC	5 cut(s)	24, 102, 543, 896, 1054
Alw44I	GTGCAC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	440, 564
Ama87I	CYCGRG	2 cut(s)	546, 893
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	2 cut(s)	476, 863
ApaLI	GTGCAC	1 cut(s)	734
ApeKI	GCWGC	3 cut(s)	4, 500, 810
ApoI	RAATTY	2 cut(s)	189, 224
AsiGI	ACCGGT	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	905
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	80, 278, 830
AsuII	TTCGAA	1 cut(s)	931
AvaI	CYCGRG	2 cut(s)	546, 893
AvaII	GGWCC	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	60, 314
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	2 cut(s)	339, 738
BbvI	GCAGC	3 cut(s)	16, 512, 822
BccI	CCATC	3 cut(s)	327, 667, 896
BceAI	ACGGC	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	5 cut(s)	24, 102, 543, 896, 1054
BfaI	CTAG	4 cut(s)	332, 777, 843, 870
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	962
BisI	GCNGC	4 cut(s)	5, 501, 504, 811
BlsI	GCNGC	4 cut(s)	6, 502, 505, 812
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	905
BmeT110I	CYCGRG	2 cut(s)	546, 893
BmgT120I	GGNCC	1 cut(s)	905
BmiI	GGNNCC	3 cut(s)	62, 316, 455
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	397
BoxI	GACNNNNGTC	2 cut(s)	143, 306
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	395, 817
Bpu14I	TTCGAA	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	103
BsaI	GGTCTC	3 cut(s)	102, 543, 896
BsaJI	CCNNGG	3 cut(s)	545, 699, 860
BsaWI	WCCGGW	3 cut(s)	142, 456, 710
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 435, 548, 872
Bse118I	RCCGGY	3 cut(s)	93, 478, 710
Bse1I	ACTGG	2 cut(s)	378, 403
BseAI	TCCGGA	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	545, 699, 860
BseGI	GGATG	2 cut(s)	678, 856
BseLI	CCNNNNNNNGG	4 cut(s)	365, 435, 548, 872
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	378, 403
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	3 cut(s)	16, 512, 822
BseYI	CCCAGC	2 cut(s)	449, 589
Bsh1285I	CGRYCG	2 cut(s)	510, 647
BshFI	GGCC	2 cut(s)	478, 865
BshNI	GGYRCC	2 cut(s)	60, 314
BshTI	ACCGGT	1 cut(s)	710
BsiEI	CGRYCG	2 cut(s)	510, 647
BsiHKAI	GWGCWC	2 cut(s)	339, 738
BsiHKCI	CYCGRG	2 cut(s)	546, 893
BsiSI	CCGG	8 cut(s)	27, 58, 94, 143, 429, 457, 479, 711
BslI	CCNNNNNNNGG	4 cut(s)	365, 435, 548, 872
BsmAI	GTCTC	5 cut(s)	24, 102, 543, 896, 1054
BsmI	GAATGC	2 cut(s)	658, 1025
BsnI	GGCC	2 cut(s)	478, 865
Bso31I	GGTCTC	3 cut(s)	102, 543, 896
BsoBI	CYCGRG	2 cut(s)	546, 893
Bsp119I	TTCGAA	1 cut(s)	931
Bsp1286I	GDGCHC	2 cut(s)	339, 738
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	181, 416, 432, 527, 569
BspANI	GGCC	2 cut(s)	478, 865
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	62, 316, 455
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	2 cut(s)	440, 564
BspT104I	TTCGAA	1 cut(s)	931
BspT107I	GGYRCC	2 cut(s)	60, 314
BspTI	CTTAAG	1 cut(s)	34
BspTNI	GGTCTC	3 cut(s)	102, 543, 896
BsrBI	CCGCTC	1 cut(s)	577
BsrFI	RCCGGY	3 cut(s)	93, 478, 710
BsrI	ACTGG	2 cut(s)	378, 403
BssAI	RCCGGY	3 cut(s)	93, 478, 710
BssECI	CCNNGG	3 cut(s)	545, 699, 860
BssMI	GATC	5 cut(s)	181, 416, 432, 527, 569
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	699, 860
Bst4CI	ACNGT	1 cut(s)	645
Bst6I	CTCTTC	2 cut(s)	5, 771
BstACI	GRCGYC	1 cut(s)	103
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	931
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	678, 856
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	5 cut(s)	184, 419, 435, 530, 572
BstMAI	GTCTC	5 cut(s)	24, 102, 543, 896, 1054
BstMBI	GATC	5 cut(s)	181, 416, 432, 527, 569
BstMCI	CGRYCG	2 cut(s)	510, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 1031
BstNSI	RCATGY	1 cut(s)	210
BstPAI	GACNNNNGTC	2 cut(s)	143, 306
BstSCI	CCNGG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	16, 512, 822
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	478, 865
BtsCI	GGATG	2 cut(s)	678, 856
BtsI	GCAGTG	2 cut(s)	736, 1029
BtsIMutI	CAGTG	4 cut(s)	497, 565, 736, 1029
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	1 cut(s)	686
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	3 cut(s)	93, 478, 710
Cfr13I	GGNCC	1 cut(s)	905
CseI	GACGC	2 cut(s)	92, 469
CspAI	ACCGGT	1 cut(s)	710
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	107, 207
CviJI	RGCY	9 cut(s)	39, 52, 259, 478, 589, 628, 722, 832, 865
CviKI_1	RGCY	9 cut(s)	39, 52, 259, 478, 589, 628, 722, 832, 865
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	5 cut(s)	183, 418, 434, 529, 571
DpnII	GATC	5 cut(s)	181, 416, 432, 527, 569
DrdI	GACNNNNNNGTC	1 cut(s)	957
DseDI	GACNNNNNNGTC	1 cut(s)	957
Eam1104I	CTCTTC	2 cut(s)	5, 771
EarI	CTCTTC	2 cut(s)	5, 771
EciI	GGCGGA	3 cut(s)	13, 531, 692
Eco130I	CCWWGG	2 cut(s)	699, 860
Eco31I	GGTCTC	3 cut(s)	102, 543, 896
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	502
Eco88I	CYCGRG	2 cut(s)	546, 893
EcoT14I	CCWWGG	2 cut(s)	699, 860
ErhI	CCWWGG	2 cut(s)	699, 860
FaeI	CATG	2 cut(s)	110, 210
FatI	CATG	2 cut(s)	106, 206
FauI	CCCGC	1 cut(s)	677
FblI	GTMKAC	2 cut(s)	949, 1005
Fnu4HI	GCNGC	4 cut(s)	5, 501, 504, 811
FokI	GGATG	2 cut(s)	685, 843
Fsp4HI	GCNGC	4 cut(s)	5, 501, 504, 811
FspBI	CTAG	4 cut(s)	332, 777, 843, 870
FspI	TGCGCA	1 cut(s)	1041
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	4 cut(s)	5, 501, 504, 811
GsaI	CCCAGC	2 cut(s)	453, 593
GsuI	CTGGAG	2 cut(s)	395, 817
HaeIII	GGCC	2 cut(s)	478, 865
HapII	CCGG	8 cut(s)	27, 58, 94, 143, 429, 457, 479, 711
HgaI	GACGC	2 cut(s)	92, 469
HhaI	GCGC	1 cut(s)	1042
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	110, 210
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HinfI	GANTC	6 cut(s)	139, 487, 606, 611, 695, 983
HpaII	CCGG	8 cut(s)	27, 58, 94, 143, 429, 457, 479, 711
HphI	GGTGA	3 cut(s)	80, 278, 830
Hpy166II	GTNNAC	4 cut(s)	371, 736, 950, 1006
Hpy188I	TCNGA	5 cut(s)	149, 421, 574, 901, 1054
Hpy188III	TCNNGA	7 cut(s)	179, 185, 332, 457, 777, 796, 977
Hpy8I	GTNNAC	4 cut(s)	371, 736, 950, 1006
Hpy99I	CGWCG	2 cut(s)	693, 1010
HpyAV	CCTTC	3 cut(s)	468, 674, 876
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4V	TGCA	6 cut(s)	4, 277, 500, 656, 736, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 1031
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	110, 210
HspAI	GCGC	1 cut(s)	1040
Kpn2I	TCCGGA	1 cut(s)	456
Kzo9I	GATC	5 cut(s)	181, 416, 432, 527, 569
LmnI	GCTCC	3 cut(s)	115, 704, 1039
Lsp1109I	GCAGC	3 cut(s)	16, 512, 822
MaeI	CTAG	4 cut(s)	332, 777, 843, 870
MaeIII	GTNAC	3 cut(s)	215, 639, 935
MalI	GATC	5 cut(s)	183, 418, 434, 529, 571
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	5 cut(s)	181, 416, 432, 527, 569
MboII	GAAGA	5 cut(s)	22, 314, 508, 753, 758
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	2 cut(s)	339, 738
MluCI	AATT	3 cut(s)	189, 224, 279
MlyI	GAGTC	3 cut(s)	133, 605, 977
MmeI	TCCRAC	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	456
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	45, 646
MspA1I	CMGCKG	2 cut(s)	503, 813
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	8 cut(s)	27, 58, 94, 143, 429, 457, 479, 711
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	2 cut(s)	658, 1025
MwoI	GCNNNNNNNGC	2 cut(s)	58, 1031
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	5 cut(s)	181, 416, 432, 527, 569
NlaIII	CATG	2 cut(s)	110, 210
NlaIV	GGNNCC	3 cut(s)	62, 316, 455
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	639, 935
NsbI	TGCGCA	1 cut(s)	1041
NspI	RCATGY	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	931
OliI	CACNNNNGTG	2 cut(s)	45, 646
PctI	GAATGC	2 cut(s)	658, 1025
PfeI	GAWTC	3 cut(s)	487, 606, 695
PinAI	ACCGGT	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	6, 502, 505, 812
PleI	GAGTC	3 cut(s)	133, 605, 977
PpsI	GAGTC	3 cut(s)	133, 605, 977
PshAI	GACNNNNGTC	2 cut(s)	143, 306
PsiI	TTATAA	1 cut(s)	287
PspFI	CCCAGC	2 cut(s)	449, 589
PspN4I	GGNNCC	3 cut(s)	62, 316, 455
PspPI	GGNCC	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	569
RseI	CAYNNNNRTG	2 cut(s)	45, 646
SalI	GTCGAC	1 cut(s)	1004
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	4 cut(s)	5, 501, 504, 811
Sau3AI	GATC	5 cut(s)	181, 416, 432, 527, 569
Sau96I	GGNCC	1 cut(s)	905
SchI	GAGTC	3 cut(s)	133, 605, 977
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	339, 738
SfuI	TTCGAA	1 cut(s)	931
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	2 cut(s)	45, 646
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	3 cut(s)	189, 224, 279
SspMI	CTAG	4 cut(s)	332, 777, 843, 870
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	699, 860
TaaI	ACNGT	1 cut(s)	645
TaqI	TCGA	4 cut(s)	76, 609, 931, 1005
TasI	AATT	3 cut(s)	189, 224, 279
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	487, 606, 695
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	4 cut(s)	497, 565, 743, 1036
TseFI	GTSAC	2 cut(s)	639, 935
TseI	GCWGC	3 cut(s)	4, 500, 810
Tsp45I	GTSAC	2 cut(s)	639, 935
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	497, 565, 743, 1036
Vha464I	CTTAAG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	905
XapI	RAATTY	2 cut(s)	189, 224
XbaI	TCTAGA	2 cut(s)	331, 776
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	2 cut(s)	949, 1005
XspI	CTAG	4 cut(s)	332, 777, 843, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.