Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0021085

Physical Location & Seq

Genomic Coordinates Forward (+)

906244 .. 907865

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATTTGCAGCATAACCTAGCAAAGATTCAAGCTGATGCAATGCCCGAGCACTATGAAGCAGAGTTGGAAATAAATGATATTCCCCAGAATGCTCGATGGAAGGTTACCCACAAGGAAACTTTGGGCCCTATATCAGAGTTGACTGGAGCTGCCATTACTATTAGGGGTCAACATTTCCCACCAGGCAAGGTTCCAGGGCCAGGAGATCGCAAGCTTTACCTGTTTATTGAGGGTCCTACTGAACAATCTGTCAAGAGAGGTAAATCAGAACTAAAACGCAAGTTGGAAGAAATCATGAATCAGTCATTATCACTTCCCGGCGGCGCTCAGCAACGCAGATATCAACTGGAACTAGCAATGGATCATAAGCCAGTGGAAATGTCATGCCAAAGTGGCCGCGGAAGACATCAGGGGACTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

143

Amino Acids

15.95

Weight (kDa)

7.91

Isoelectric Point (pI)

63.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	20 - 103	1.9e-14	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26290
malus_domestica	MD17G1075300.v1.1 MD17G1104600.v1.1
pyrus_communis	pycom09g01170
rosa_multiflora	Rmu_sc0042919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	402
AciI	CCGC	3 cut(s)	324, 400, 402
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	3 cut(s)	184, 196, 202
AluBI	AGCT	3 cut(s)	35, 152, 217
AluI	AGCT	3 cut(s)	35, 152, 217
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	3 cut(s)	127, 200, 397
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	10, 152
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	127, 128, 200, 236
AsuC2I	CCSGG	1 cut(s)	321
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	22, 139
BccI	CCATC	1 cut(s)	93
BciT130I	CCWGG	3 cut(s)	186, 198, 204
BcnI	CCSGG	1 cut(s)	321
BfaI	CTAG	2 cut(s)	20, 356
BfoI	RGCGCY	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	4 cut(s)	11, 153, 325, 400
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	4 cut(s)	12, 154, 326, 401
Bme1390I	CCNGG	4 cut(s)	186, 198, 204, 321
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	4 cut(s)	127, 128, 200, 236
BmiI	GGNNCC	3 cut(s)	129, 195, 237
BmrFI	CCNGG	4 cut(s)	186, 198, 204, 321
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	197, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	151, 354, 374
Bse3DI	GCAATG	2 cut(s)	48, 366
BseBI	CCWGG	3 cut(s)	186, 198, 204
BseDI	CCNNGG	2 cut(s)	197, 400
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	48, 366
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	3 cut(s)	151, 354, 374
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	22, 139
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	129, 202, 399
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	3 cut(s)	129, 202, 399
BsoBI	CYCGRG	1 cut(s)	47
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	54, 131
Bsp143I	GATC	2 cut(s)	208, 364
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	324, 400, 402
BspANI	GGCC	3 cut(s)	129, 202, 399
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	129, 195, 237
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	48, 366
BsrI	ACTGG	3 cut(s)	151, 354, 374
BssECI	CCNNGG	2 cut(s)	197, 400
BssMI	GATC	2 cut(s)	208, 364
Bst2UI	CCWGG	3 cut(s)	186, 198, 204
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	400
BstEII	GGTNACC	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	211, 367
BstMBI	GATC	2 cut(s)	208, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	3 cut(s)	186, 198, 204
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	184, 196, 202, 319
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	22, 139
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	129, 202, 399
BtgI	CCRYGG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	215
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	4 cut(s)	127, 128, 200, 236
Cfr42I	CCGCGG	1 cut(s)	403
CviAII	CATG	2 cut(s)	298, 387
CviJI	RGCY	7 cut(s)	35, 129, 152, 202, 217, 373, 399
CviKI_1	RGCY	7 cut(s)	35, 129, 152, 202, 217, 373, 399
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	210, 366
DpnII	GATC	2 cut(s)	208, 364
EaeI	YGGCCR	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	128, 236
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	184, 196, 202
EcoRV	GATATC	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	2 cut(s)	301, 390
FaiI	YATR	6 cut(s)	15, 57, 134, 299, 369, 388
FatI	CATG	2 cut(s)	297, 386
Fnu4HI	GCNGC	4 cut(s)	11, 153, 325, 400
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	11, 153, 325, 400
FspBI	CTAG	2 cut(s)	20, 356
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	11, 153, 325, 400
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	129, 202, 399
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	301, 390
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	144, 173
HindII	GTYRAC	2 cut(s)	144, 173
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	28, 301
HpaII	CCGG	1 cut(s)	321
Hpy166II	GTNNAC	2 cut(s)	144, 173
Hpy188I	TCNGA	2 cut(s)	139, 271
Hpy188III	TCNNGA	2 cut(s)	256, 298
Hpy8I	GTNNAC	2 cut(s)	144, 173
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	10, 41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	301, 390
HspAI	GCGC	1 cut(s)	327
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	208, 364
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	2 cut(s)	22, 139
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	20, 356
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	210, 366
MboI	GATC	2 cut(s)	208, 364
MboII	GAAGA	2 cut(s)	302, 417
MhlI	GDGCHC	2 cut(s)	54, 131
MluCI	AATT	1 cut(s)	4
MmeI	TCCRAC	2 cut(s)	48, 267
MnlI	CCTC	2 cut(s)	226, 254
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	4 cut(s)	186, 198, 204, 321
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	3 cut(s)	186, 198, 204
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	208, 364
NlaIII	CATG	2 cut(s)	301, 390
NlaIV	GGNNCC	3 cut(s)	129, 195, 237
PagI	TCATGA	1 cut(s)	297
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	28, 301
PkrI	GCNGC	4 cut(s)	12, 154, 326, 401
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	184, 196, 202
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	3 cut(s)	184, 196, 202
PspN4I	GGNNCC	3 cut(s)	129, 195, 237
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	4 cut(s)	127, 128, 200, 236
PspPPI	RGGWCCY	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	403
SatI	GCNGC	4 cut(s)	11, 153, 325, 400
Sau3AI	GATC	2 cut(s)	208, 364
Sau96I	GGNCC	4 cut(s)	127, 128, 200, 236
ScrFI	CCNGG	4 cut(s)	186, 198, 204, 321
SduI	GDGCHC	2 cut(s)	54, 131
SetI	ASST	8 cut(s)	21, 37, 108, 154, 195, 219, 225, 265
SfaNI	GCATC	1 cut(s)	28
Sfr303I	CCGCGG	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	3 cut(s)	324, 400, 402
SspMI	CTAG	2 cut(s)	20, 356
StyD4I	CCNGG	4 cut(s)	184, 196, 202, 319
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	4
TauI	GCSGC	2 cut(s)	327, 402
TfiI	GAWTC	2 cut(s)	28, 301
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	10, 152
TspDTI	ATGAA	3 cut(s)	17, 72, 314
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	20, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.