pycom09g02620

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0015674
Physical Location & Seq
Reverse (-)
1958392 .. 1959219
828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02620.1

Sequence Viewer

Length: 828 bp
ATGCAATGGCCTACTTTAATAGATGCATTGGAAAAAAGGCCTGAGGGTCCTCCTTTGCTTAGAATCACTGTTCCCCATTGGGGGCCACAAGTCCCACCTTTGCTCAATGTTTCAAGCGAAGAAGTTGGTCTTCGTTTGGGGAATTTCTCTAGGTTTAGAAATGTCCCTTTTGAGTTCAATGTGATTGAAAATTCATCCTCTTTGGAATTGCTTCTGGGCACTCAATTAAACCCTTCCTCACTAGGGCTCCGGGAAGATGAGGTTTTGGTTGTAAATTGTCAAAACTGGTTACACTATCTTTCCGATGAGCCGCTTGGTGGTATCCCCGGCCATCAAGATGGTTCGATGCGCAACACTTTCCTTAACACCATTAGATCGCTTAAATCTAGAATCATAGTTGTGGTAGATGAAGATTCTGATCTTACTGCACCAAGTCTTAGCTCAAGAATAACAACTTGTTTTAATTATCTTTGGATACCCTTTGATTCCTTGGAAACATTCTTGCCTAAAGATAGTACTCAAAGGATGAATTATGAATCTGATGTTGGTCACAAAATTGAAAACATTATTGGTTTTGAAGGGCAACAAAGAATAGAGAGGTTGGAGTCAGGTGTCACAATGTCACAAAGATTGAGAAGCATTGGTTTTTCAAGTGCTCCATTTTGTGAAGAGACTGCTAAGGAAGTGAAGGCCTTGTTAGATGAACATGCAAGTGGTTGGGGCATGAAACGTGAAGAAGATATGTTGGTGCTCACATGGAAGGGACACAACTCAGTTTTTGCGACAGCTTGGGTCCCAAATCCAAATGCGTTGCTAATTGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

276

Amino Acids

31.02

Weight (kDa)

4.95

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 1 - 264 3.2e-55 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43780
malus_domestica MD09G1103000.v1.1 MD17G1090800.v1.1
prunus_persica Prupe.3G222800_v2.0.a1
pyrus_communis pycom09g02620 pycom17g08760
rosa_chinensis RchiOBHm_Chr2g0160531
rosa_laevigata RLG00000021220
rosa_multiflora Rmu_sc0000674.1_g000006
rosa_roxburghii Rroxscaffold_2G00089740
rosa_rugosa Rorug02G0483600
rosa_samantha Rh2AG548900 Rh2BG562600 Rh2CG533200 Rh2DG571900
rosa_wichuraiana Rw2G045440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 350
AciI CCGC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 2 cut(s) 142, 190
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 4 cut(s) 80, 81, 243, 317
AgsI TTSAA 6 cut(s) 114, 178, 188, 560, 578, 651
AjuI GAANNNNNNNTTGG 4 cut(s) 528, 552, 560, 584
AluBI AGCT 2 cut(s) 441, 788
AluI AGCT 2 cut(s) 441, 788
Alw21I GWGCWC 2 cut(s) 658, 753
Alw26I GTCTC 1 cut(s) 665
AoxI GGCC 5 cut(s) 8, 38, 83, 328, 690
ApoI RAATTY 2 cut(s) 142, 190
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 47, 83, 793
AsuC2I CCSGG 2 cut(s) 251, 327
AvaII GGWCC 2 cut(s) 47, 793
AxyI CCTNAGG 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 658, 753
BccI CCATC 2 cut(s) 332, 339
BciVI GTATCC 2 cut(s) 332, 468
BcnI CCSGG 2 cut(s) 251, 327
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 3 cut(s) 150, 242, 387
BfuI GTATCC 2 cut(s) 332, 468
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 251, 327
Bme18I GGWCC 2 cut(s) 47, 793
BmgT120I GGNCC 3 cut(s) 47, 83, 793
BmiI GGNNCC 5 cut(s) 48, 84, 248, 794, 795
BmrFI CCNGG 2 cut(s) 251, 327
BmsI GCATC 2 cut(s) 13, 336
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 251, 327
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 325, 489
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 81, 243, 317
Bse1I ACTGG 1 cut(s) 290
Bse21I CCTNAGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 325, 489
BseGI GGATG 2 cut(s) 194, 531
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 4 cut(s) 80, 81, 243, 317
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 33, 786
BseNI ACTGG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 5 cut(s) 10, 40, 85, 330, 692
BsiHKAI GWGCWC 2 cut(s) 658, 753
BsiSI CCGG 2 cut(s) 250, 327
BslFI GGGAC 4 cut(s) 77, 149, 777, 779
BslI CCNNNNNNNGG 4 cut(s) 80, 81, 243, 317
BsmAI GTCTC 1 cut(s) 665
BsmFI GGGAC 4 cut(s) 77, 149, 777, 779
BsnI GGCC 5 cut(s) 10, 40, 85, 330, 692
Bsp1286I GDGCHC 4 cut(s) 221, 249, 658, 753
Bsp143I GATC 2 cut(s) 374, 418
BspACI CCGC 1 cut(s) 311
BspANI GGCC 5 cut(s) 10, 40, 85, 330, 692
BspCNI CTCAG 2 cut(s) 34, 785
BspLI GGNNCC 5 cut(s) 48, 84, 248, 794, 795
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 325, 489
BssMI GATC 2 cut(s) 374, 418
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 663
BstDEI CTNAG 5 cut(s) 42, 59, 437, 678, 772
BstF5I GGATG 2 cut(s) 194, 531
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 377, 421
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 2 cut(s) 374, 418
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 249, 325
BstSLI GKGCMC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 338
Bsu36I CCTNAGG 1 cut(s) 42
BsuI GTATCC 2 cut(s) 332, 468
BsuRI GGCC 5 cut(s) 10, 40, 85, 330, 692
BtsCI GGATG 2 cut(s) 194, 531
BtsIMutI CAGTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 47, 83, 793
Csp6I GTAC 1 cut(s) 516
CviAII CATG 3 cut(s) 707, 724, 756
CviJI RGCY 9 cut(s) 10, 40, 85, 247, 310, 330, 441, 692, 788
CviKI_1 RGCY 9 cut(s) 10, 40, 85, 247, 310, 330, 441, 692, 788
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 5 cut(s) 42, 59, 437, 678, 772
DpnI GATC 2 cut(s) 376, 420
DpnII GATC 2 cut(s) 374, 418
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 2 cut(s) 40, 692
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 47, 793
Eco81I CCTNAGG 1 cut(s) 42
EcoO109I RGGNCCY 2 cut(s) 47, 793
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 3 cut(s) 710, 727, 759
FaiI YATR 6 cut(s) 395, 534, 708, 725, 743, 757
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 4 cut(s) 77, 149, 777, 779
FatI CATG 3 cut(s) 706, 723, 755
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 2 cut(s) 181, 538
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 3 cut(s) 150, 242, 387
FspI TGCGCA 1 cut(s) 350
GlaI GCGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 311
HaeIII GGCC 5 cut(s) 10, 40, 85, 330, 692
HapII CCGG 2 cut(s) 250, 327
HhaI GCGC 1 cut(s) 351
Hin1II CATG 3 cut(s) 710, 727, 759
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 6 cut(s) 63, 390, 413, 485, 536, 605
HpaII CCGG 2 cut(s) 250, 327
Hpy188I TCNGA 3 cut(s) 304, 418, 541
Hpy188III TCNNGA 3 cut(s) 335, 387, 444
HpyAV CCTTC 4 cut(s) 243, 572, 682, 754
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 4 cut(s) 4, 26, 428, 710
HpyF3I CTNAG 5 cut(s) 42, 59, 437, 678, 772
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 3 cut(s) 710, 727, 759
HspAI GCGC 1 cut(s) 349
KflI GGGWCCC 1 cut(s) 793
Kzo9I GATC 2 cut(s) 374, 418
LmnI GCTCC 2 cut(s) 252, 661
LpnPI CCDG 6 cut(s) 54, 200, 263, 271, 340, 594
LweI GCATC 2 cut(s) 13, 336
MaeI CTAG 3 cut(s) 150, 242, 387
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 4 cut(s) 288, 548, 613, 621
MalI GATC 2 cut(s) 376, 420
MboI GATC 2 cut(s) 374, 418
MboII GAAGA 7 cut(s) 122, 131, 266, 422, 680, 746, 749
MhlI GDGCHC 4 cut(s) 221, 249, 658, 753
MluCI AATT 9 cut(s) 142, 190, 206, 224, 274, 463, 529, 555, 816
MlyI GAGTC 1 cut(s) 614
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 7 cut(s) 37, 60, 208, 247, 253, 591, 814
Mph1103I ATGCAT 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 6 cut(s) 17, 227, 363, 381, 462, 826
MslI CAYNNNNRTG 3 cut(s) 336, 398, 711
MspI CCGG 2 cut(s) 250, 327
MspR9I CCNGG 2 cut(s) 251, 327
NciI CCSGG 2 cut(s) 251, 327
NdeII GATC 2 cut(s) 374, 418
NlaIII CATG 3 cut(s) 710, 727, 759
NlaIV GGNNCC 5 cut(s) 48, 84, 248, 794, 795
NmuCI GTSAC 3 cut(s) 548, 613, 621
NsbI TGCGCA 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 28
NspI RCATGY 1 cut(s) 710
PceI AGGCCT 2 cut(s) 40, 692
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 5 cut(s) 63, 390, 413, 485, 536
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PpuMI RGGWCCY 2 cut(s) 47, 793
Psp5II RGGWCCY 2 cut(s) 47, 793
PspN4I GGNNCC 5 cut(s) 48, 84, 248, 794, 795
PspPI GGNCC 3 cut(s) 47, 83, 793
PspPPI RGGWCCY 2 cut(s) 47, 793
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 3 cut(s) 336, 398, 711
SaqAI TTAA 6 cut(s) 17, 227, 363, 381, 462, 826
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 374, 418
Sau96I GGNCC 3 cut(s) 47, 83, 793
ScaI AGTACT 1 cut(s) 517
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 2 cut(s) 251, 327
SduI GDGCHC 4 cut(s) 221, 249, 658, 753
SetI ASST 8 cut(s) 100, 155, 264, 443, 602, 613, 733, 790
SfaNI GCATC 2 cut(s) 13, 336
SinI GGWCC 2 cut(s) 47, 793
SmiMI CAYNNNNRTG 3 cut(s) 336, 398, 711
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 9 cut(s) 142, 190, 206, 224, 274, 463, 529, 555, 816
SseBI AGGCCT 2 cut(s) 40, 692
SsiI CCGC 1 cut(s) 311
SspMI CTAG 3 cut(s) 150, 242, 387
StuI AGGCCT 2 cut(s) 40, 692
StyD4I CCNGG 2 cut(s) 249, 325
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 733
TaqI TCGA 1 cut(s) 344
TasI AATT 9 cut(s) 142, 190, 206, 224, 274, 463, 529, 555, 816
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 5 cut(s) 63, 390, 413, 485, 536
Tru1I TTAA 6 cut(s) 17, 227, 363, 381, 462, 826
Tru9I TTAA 6 cut(s) 17, 227, 363, 381, 462, 826
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 3 cut(s) 548, 613, 621
Tsp45I GTSAC 3 cut(s) 548, 613, 621
TspDTI ATGAA 6 cut(s) 183, 423, 542, 549, 717, 740
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 47, 793
XapI RAATTY 2 cut(s) 142, 190
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 3 cut(s) 150, 242, 387
ZrmI AGTACT 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.