pycom09g05200

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006273
Physical Location & Seq
Forward (+)
3873822 .. 3874353
532 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05200.2

Sequence Viewer

Length: 294 bp
ATGTCGATGCCATACAGAGTTCAGCGAATAGAGGAGTTTGTGAAAGAGCTCGAATCAAGGATCGATCTGAAACTGCGAGTCCGGGTACTTGAGATGGCGACGATGTATACAGTCTTGGGAGGTACCCTGGTGAACCTCGGGGTCACTTTGAGCAGTCAAGGCAGTCAAGCTTTCGCAAATGGATCATTCATCGGTGCAGGAATCTTCTTCACGCTGTTAGCTAGGTCTATGCAGAGGGTGAAAAAACTTGATAAATTCGAGAAGATCGATCTAATGTCTCAGCCGAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
ABC1

Protein Analysis

98

Amino Acids

10.97

Weight (kDa)

9.89

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 107
AclWI GGATC 2 cut(s) 68, 190
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 87, 124
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 49, 170, 221
AluI AGCT 3 cut(s) 49, 170, 221
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 2 cut(s) 68, 190
Ama87I CYCGRG 1 cut(s) 137
ApoI RAATTY 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 142, 250
AvaI CYCGRG 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 114, 147
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 222, 292
Bme1390I CCNGG 2 cut(s) 83, 128
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 83, 128
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 2 cut(s) 63, 267
BsaJI CCNNGG 2 cut(s) 126, 136
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 2 cut(s) 63, 267
BseDI CCNNGG 2 cut(s) 126, 136
BseMII CTCAG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 122
BshVI ATCGAT 2 cut(s) 63, 267
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 5 cut(s) 60, 64, 182, 264, 268
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 2 cut(s) 63, 267
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 2 cut(s) 68, 190
BspT107I GGYRCC 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 126, 136
BssMI GATC 5 cut(s) 60, 64, 182, 264, 268
BssNAI GTATAC 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 5 cut(s) 63, 67, 185, 267, 271
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 5 cut(s) 60, 64, 182, 264, 268
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 81, 126
BstZ17I GTATAC 1 cut(s) 108
Bsu15I ATCGAT 2 cut(s) 63, 267
BsuTUI ATCGAT 2 cut(s) 63, 267
ClaI ATCGAT 2 cut(s) 63, 267
Csp6I GTAC 2 cut(s) 86, 123
CviJI RGCY 4 cut(s) 49, 170, 221, 283
CviKI_1 RGCY 4 cut(s) 49, 170, 221, 283
CviQI GTAC 2 cut(s) 86, 123
DdeI CTNAG 1 cut(s) 279
DpnI GATC 5 cut(s) 62, 66, 184, 266, 270
DpnII GATC 5 cut(s) 60, 64, 182, 264, 268
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 51
FaiI YATR 3 cut(s) 13, 108, 230
FblI GTMKAC 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 222, 292
HapII CCGG 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 3 cut(s) 53, 78, 201
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 142, 250
Hpy166II GTNNAC 2 cut(s) 108, 133
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 108, 133
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 197, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 279
KpnI GGTACC 1 cut(s) 126
Kzo9I GATC 5 cut(s) 60, 64, 182, 264, 268
LpnPI CCDG 4 cut(s) 95, 113, 140, 183
MaeI CTAG 2 cut(s) 222, 292
MaeIII GTNAC 1 cut(s) 142
MalI GATC 5 cut(s) 62, 66, 184, 266, 270
MboI GATC 5 cut(s) 60, 64, 182, 264, 268
MboII GAAGA 3 cut(s) 196, 199, 274
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 4 cut(s) 25, 113, 146, 228
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 83, 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 83
NdeII GATC 5 cut(s) 60, 64, 182, 264, 268
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 53, 201
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 124
RsaI GTAC 2 cut(s) 87, 124
RsaNI GTAC 2 cut(s) 86, 123
SacI GAGCTC 1 cut(s) 51
Sau3AI GATC 5 cut(s) 60, 64, 182, 264, 268
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 83, 128
SduI GDGCHC 1 cut(s) 51
SetI ASST 6 cut(s) 51, 124, 138, 172, 223, 227
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 254
SspMI CTAG 2 cut(s) 222, 292
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 81, 126
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 5 cut(s) 5, 51, 63, 258, 267
TasI AATT 1 cut(s) 254
TfiI GAWTC 2 cut(s) 53, 201
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 178
XapI RAATTY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 2 cut(s) 222, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.