Rorug02G0450100

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006273
Physical Location & Seq
Forward (+)
57739012 .. 57740353
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0450100.1

Sequence Viewer

Length: 255 bp
ATGTTGTGGTCTCTGACGGTTATGGTGGTAGCTCAGGTGTATGTGATTAGTGGGACTGTTGCTCAGTGGTACTTCACCAAGGAAGACTCGACTCCAAAGCGGGTTATTAGAAGTTCCTTAAGCAATAGGAGGGAGAGTGAGTGCTTAATGGTCAGTGAGAAAAAGAGGAGGGCGAATCAGTTTGTGTTTCTTTTGAAAAAGGTTTCACCTGCTACTACTATTATTGCTGCAACTCATTTATCTGTTGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
ABC1

Protein Analysis

84

Amino Acids

9.56

Weight (kDa)

10.29

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 1 - 41 7.1e-07 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AciI CCGC 1 cut(s) 100
AfaI GTAC 1 cut(s) 71
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 67, 198
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 15
BfrI CTTAAG 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 4 cut(s) 121, 125, 151, 155
BseDI CCNNGG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 47, 77
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 15
BspACI CCGC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 46, 76
BspMI ACCTGC 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 19, 58
BstAFI CTTAAG 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 33, 63
BstMAI GTCTC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 71, 160
BveI ACCTGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 33, 63
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 2 cut(s) 23, 42
FaqI GGGAC 1 cut(s) 67
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
HinfI GANTC 3 cut(s) 86, 91, 175
HphI GGTGA 2 cut(s) 67, 198
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 19, 58
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 33, 63
LpnPI CCDG 2 cut(s) 20, 222
Lsp1109I GCAGC 1 cut(s) 214
MboII GAAGA 1 cut(s) 95
MlyI GAGTC 2 cut(s) 80, 85
MnlI CCTC 3 cut(s) 123, 159, 162
MseI TTAA 2 cut(s) 119, 146
MspCI CTTAAG 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 2 cut(s) 80, 85
PpsI GAGTC 2 cut(s) 80, 85
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 119, 146
SatI GCNGC 1 cut(s) 228
SchI GAGTC 2 cut(s) 80, 85
SetI ASST 4 cut(s) 34, 39, 204, 211
SgeI CNNG 5 cut(s) 47, 91, 100, 113, 221
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SsiI CCGC 1 cut(s) 100
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 19, 58
TaqI TCGA 1 cut(s) 89
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 119, 146
Tru9I TTAA 2 cut(s) 119, 146
TscAI CASTG 2 cut(s) 71, 160
TseI GCWGC 1 cut(s) 227
TspRI CASTG 2 cut(s) 71, 160
Vha464I CTTAAG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.