Rh2DG536500

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006273
Physical Location & Seq
Reverse (-)
76633869 .. 76639634
5766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG536500.1

Sequence Viewer

Length: 1623 bp
ATGGCTGCAGTACTGGCTACCAACAGATGCTATGGGCACAATGTGGAGTTAACAAATCAAGGGAAATCAGTAAATAGTCTTAGTTTCTCAAGCTCAATTTCGATTCCTAAAAACATCAATTCCGGGAGACCAACTAGTAATCCAGCTCAGGCCAATCAATGTCTTCGGTTTCAAGTGGAAATGCGACAGGCTGAGTCATCATCTTCAAGGCTCGGTGTCAATGGAAGGTCTGTGAAAATGGTGCCAGCTAGTGAGGTAATGAAAAGGCAAACCCCATCTACTAATAAGGCTGACATAGTGAATGGAGTGAATGGTTCGAAGCCGGTTGTTAATGGAGCAAGTCTAGTTAGAAAACATTCTACTCCAGCTGCAACCTTGGTTAAGACACAGAAATCTAAAACTTCTAAAGAACTTCCCCCGTTCGAGGAGCTAAGAGTTTTGCCATCAGATGAAAGCTTCAGTTGGGCCAATGAAAACTATAATTCATGGCAACGATCTGCAGATGTATGGTCTTTTGTTCTCTCATTGCGTGTTCGTGTTCTGTTCGACAATGCAAAATGGGCATATATAGGAGGTTTCACAGAAGATAAGCAGAAAATCAGAAGGCGAAAGACCGCCTCATGGCTGCGAGAGCGTGTATTGCAGCTTGGCCCAACTTTTATCAAACTCGGACAATTATCTTCAACAAGATCAGATCTATTTCCGCAGGAGTTTGTGGACGAGCTTGCCAAATTACAGGATAGGGTTCCCGCCTTCTCACCAGCCAAAGCGAAAGGCTTTATTAAGACTGAATTAGGAGCTCCCATCAATATATTGTTTAAGGAGTTCGAGGACCAGCCAATTGCTGCTGCTAGTCTTGGTCAGGTTCATCGCGCTATCCTACATAATGGAGAGAAAGTAGTCGTGAAAGTTCAAAGACCTGGTCTGAAGAAGCTTTTTGACATTGACCTAAAAAATCTGAAGCTAATTGCAGAGTATTTCCAGAGAAGTGAAAGCCTTGGTGGTCCATCAAGGGACTGGATTGGGGTATATGAAGAATGTGCCACGATTTTGTATCAAGAAATTGATTATATAAATGAAGGGAAGAACGCTGACAGATTTCGCAGAGACTTTCGGAATATAAAGTGGGTTCGAGTACCTATGGTCTTTTGGGATTACACTGCCACGAAGGTGTTGACATTGGAGTATGTTCCAGGTATTAAGATAAACAGGCTAGATATGCTAGACGCGCAGGGATTTGATCGTTCTCAAATTGCATCACATGCTATTGAAGCATACTTGATCCAGATACTCAGAACCGGTTTCTTCCATGCTGATCCTCATCCAGGAAATCTCGCTGTTGATGTGGATGAAACTCTAATCTATTATGATTTTGGCATGATGGGAGATATTAAATCTTTCACCCGAGAGAGACTACTTGAACTTTTCTATTCTGTATATGAGAAAGATGCCAAAAAGGTTATGCAATGCCTCATAAATCTTGGAGCACTTCAGCCCACAGGAGATTTATCTTCCGTAAGGAGATCCGTTCAATTCTTTTTGGATAATTTGCTAAGCCAGACACCAGATCAGCAGACTACTTTTTCTGCAATAGGGGAGGTATGCTTATATTTGTCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
ABC1

Protein Analysis

540

Amino Acids

60.93

Weight (kDa)

9.26

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 244 - 489 3.4e-87 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccII CGCG 2 cut(s) 873, 1229
AciI CCGC 3 cut(s) 615, 704, 750
AclWI GGATC 3 cut(s) 1276, 1310, 1518
AcuI CTGAAG 4 cut(s) 442, 947, 980, 1475
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 12, 1137
AfiI CCNNNNNNNGG 3 cut(s) 424, 621, 1325
AgeI ACCGGT 1 cut(s) 1298
AgsI TTSAA 7 cut(s) 173, 207, 684, 914, 1271, 1421, 1532
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 3 cut(s) 919, 1192, 1324
AleI CACNNNNGTG 1 cut(s) 1169
Alw21I GWGCWC 2 cut(s) 802, 1489
Alw26I GTCTC 3 cut(s) 121, 1101, 1405
AlwI GGATC 3 cut(s) 1276, 1310, 1518
Ama87I CYCGRG 1 cut(s) 1404
AoxI GGCC 3 cut(s) 150, 465, 649
ApeKI GCWGC 6 cut(s) 5, 368, 625, 643, 845, 848
ArsI GACNNNNNNTTYG 2 cut(s) 907, 939
AsiGI ACCGGT 1 cut(s) 1298
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 2 cut(s) 875, 1231
AspS9I GGNCC 4 cut(s) 465, 650, 832, 1004
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 750, 1393
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 1404
AvaII GGWCC 2 cut(s) 832, 1004
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 802, 1489
BbvI GCAGC 5 cut(s) 355, 612, 655, 832, 835
BccI CCATC 5 cut(s) 283, 451, 812, 1015, 1375
BciT130I CCWGG 3 cut(s) 921, 1194, 1326
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 3 cut(s) 121, 1101, 1405
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 6 cut(s) 135, 249, 344, 852, 1214, 1223
BfmI CTRYAG 2 cut(s) 6, 498
BglII AGATCT 1 cut(s) 694
BisI GCNGC 6 cut(s) 6, 369, 626, 644, 846, 849
BlpI GCTNAGC 1 cut(s) 1553
BlsI GCNGC 6 cut(s) 7, 370, 627, 645, 847, 850
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 4 cut(s) 124, 921, 1194, 1326
Bme18I GGWCC 2 cut(s) 832, 1004
BmeT110I CYCGRG 1 cut(s) 1404
BmgT120I GGNCC 4 cut(s) 465, 650, 832, 1004
BmiI GGNNCC 2 cut(s) 243, 747
BmrFI CCNGG 4 cut(s) 124, 921, 1194, 1326
BmsI GCATC 3 cut(s) 17, 1265, 1438
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 1553
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 1320
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 375, 997
BsaWI WCCGGW 1 cut(s) 1298
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 621, 1325
Bse118I RCCGGY 2 cut(s) 322, 1298
Bse1I ACTGG 2 cut(s) 18, 1022
Bse3DI GCAATG 2 cut(s) 524, 1472
Bse8I GATNNNNATC 1 cut(s) 1320
BseBI CCWGG 3 cut(s) 921, 1194, 1326
BseDI CCNNGG 2 cut(s) 375, 997
BseGI GGATG 2 cut(s) 1321, 1354
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 3 cut(s) 424, 621, 1325
BseMI GCAATG 2 cut(s) 524, 1472
BseMII CTCAG 3 cut(s) 161, 183, 1306
BseNI ACTGG 2 cut(s) 18, 1022
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 5 cut(s) 355, 612, 655, 832, 835
Bsh1236I CGCG 2 cut(s) 873, 1229
BshFI GGCC 3 cut(s) 152, 467, 651
BshNI GGYRCC 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 1298
BsiHKAI GWGCWC 2 cut(s) 802, 1489
BsiHKCI CYCGRG 1 cut(s) 1404
BsiSI CCGG 3 cut(s) 123, 323, 1299
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 3 cut(s) 424, 621, 1325
BsmAI GTCTC 3 cut(s) 121, 1101, 1405
BsmFI GGGAC 1 cut(s) 1028
BsnI GGCC 3 cut(s) 152, 467, 651
Bso31I GGTCTC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 1404
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 39, 802, 1489
Bsp143I GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
Bsp1720I GCTNAGC 1 cut(s) 1553
BspACI CCGC 3 cut(s) 615, 704, 750
BspANI GGCC 3 cut(s) 152, 467, 651
BspCNI CTCAG 3 cut(s) 160, 184, 1305
BspFNI CGCG 2 cut(s) 873, 1229
BspLI GGNNCC 2 cut(s) 243, 747
BspMAI CTGCAG 2 cut(s) 10, 502
BspPI GGATC 3 cut(s) 1276, 1310, 1518
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 524, 1472
BsrFI RCCGGY 2 cut(s) 322, 1298
BsrI ACTGG 2 cut(s) 18, 1022
BssAI RCCGGY 2 cut(s) 322, 1298
BssECI CCNNGG 2 cut(s) 375, 997
BssMI GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
BssT1I CCWWGG 2 cut(s) 375, 997
Bst2UI CCWGG 3 cut(s) 921, 1194, 1326
BstAPI GCANNNNNTGC 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 246, 726
BstDEI CTNAG 6 cut(s) 80, 147, 192, 431, 1292, 1553
BstENI CCTNNNNNAGG 1 cut(s) 1323
BstF5I GGATG 2 cut(s) 1321, 1354
BstFNI CGCG 2 cut(s) 873, 1229
BstHHI GCGC 2 cut(s) 875, 1231
BstKTI GATC 8 cut(s) 497, 692, 697, 1243, 1284, 1318, 1526, 1570
BstMAI GTCTC 3 cut(s) 121, 1101, 1405
BstMBI GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
BstMWI GCNNNNNNNGC 8 cut(s) 14, 560, 631, 640, 1219, 1228, 1262, 1271
BstNI CCWGG 3 cut(s) 921, 1194, 1326
BstNSI RCATGY 1 cut(s) 1265
BstSCI CCNGG 4 cut(s) 122, 919, 1192, 1324
BstSFI CTRYAG 2 cut(s) 6, 498
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 2 cut(s) 873, 1229
BstV1I GCAGC 5 cut(s) 355, 612, 655, 832, 835
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 694, 1523
BstYI RGATCY 2 cut(s) 694, 1523
BsuRI GGCC 3 cut(s) 152, 467, 651
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 2 cut(s) 1321, 1354
BtsI GCAGTG 1 cut(s) 1158
BtsIMutI CAGTG 1 cut(s) 1158
Cac8I GCNNGC 2 cut(s) 246, 726
CfoI GCGC 2 cut(s) 875, 1231
Cfr10I RCCGGY 2 cut(s) 322, 1298
Cfr13I GGNCC 4 cut(s) 465, 650, 832, 1004
CseI GACGC 1 cut(s) 1235
CsiI ACCWGGT 1 cut(s) 919
Csp6I GTAC 2 cut(s) 11, 1136
CspAI ACCGGT 1 cut(s) 1298
CviAII CATG 5 cut(s) 486, 621, 1262, 1310, 1378
CviQI GTAC 2 cut(s) 11, 1136
DdeI CTNAG 6 cut(s) 80, 147, 192, 431, 1292, 1553
DpnI GATC 8 cut(s) 496, 691, 696, 1242, 1283, 1317, 1525, 1569
DpnII GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
DraIII CACNNNGTG 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 800
Eco130I CCWWGG 2 cut(s) 375, 997
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 832, 1004
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 4 cut(s) 442, 947, 980, 1475
Eco88I CYCGRG 1 cut(s) 1404
EcoICRI GAGCTC 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 1323
EcoRII CCWGG 3 cut(s) 919, 1192, 1324
EcoT14I CCWWGG 2 cut(s) 375, 997
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 2 cut(s) 375, 997
FaeI CATG 5 cut(s) 489, 624, 1265, 1313, 1381
FaqI GGGAC 1 cut(s) 1028
FatI CATG 5 cut(s) 485, 620, 1261, 1309, 1377
FauI CCCGC 1 cut(s) 757
Fnu4HI GCNGC 6 cut(s) 6, 369, 626, 644, 846, 849
FokI GGATG 2 cut(s) 1308, 1361
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 6 cut(s) 6, 369, 626, 644, 846, 849
FspBI CTAG 6 cut(s) 135, 249, 344, 852, 1214, 1223
GlaI GCGC 2 cut(s) 874, 1230
GluI GCNGC 6 cut(s) 6, 369, 626, 644, 846, 849
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 3 cut(s) 152, 467, 651
HapII CCGG 3 cut(s) 123, 323, 1299
HgaI GACGC 1 cut(s) 1235
HhaI GCGC 2 cut(s) 875, 1231
Hin1II CATG 5 cut(s) 489, 624, 1265, 1313, 1381
Hin6I GCGC 2 cut(s) 873, 1229
HinP1I GCGC 2 cut(s) 873, 1229
HincII GTYRAC 2 cut(s) 51, 1176
HindII GTYRAC 2 cut(s) 51, 1176
HindIII AAGCTT 2 cut(s) 454, 932
HinfI GANTC 2 cut(s) 103, 194
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 3 cut(s) 123, 323, 1299
HphI GGTGA 2 cut(s) 750, 1393
Hpy166II GTNNAC 3 cut(s) 51, 718, 1176
Hpy188I TCNGA 8 cut(s) 448, 602, 671, 694, 927, 960, 1116, 1295
Hpy188III TCNNGA 4 cut(s) 904, 982, 1058, 1285
Hpy8I GTNNAC 3 cut(s) 51, 718, 1176
HpyAV CCTTC 5 cut(s) 219, 597, 763, 1073, 1162
HpyCH4V TGCA 9 cut(s) 8, 371, 500, 554, 643, 971, 1256, 1465, 1589
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 560, 631, 640, 1219, 1228, 1262, 1271
HpyF3I CTNAG 6 cut(s) 80, 147, 192, 431, 1292, 1553
Hsp92II CATG 5 cut(s) 489, 624, 1265, 1313, 1381
HspAI GCGC 2 cut(s) 873, 1229
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
LmnI GCTCC 5 cut(s) 335, 427, 797, 805, 1484
Lsp1109I GCAGC 5 cut(s) 355, 612, 655, 832, 835
LweI GCATC 3 cut(s) 17, 1265, 1438
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 6 cut(s) 135, 249, 344, 852, 1214, 1223
MaeIII GTNAC 1 cut(s) 1614
MalI GATC 8 cut(s) 496, 691, 696, 1242, 1283, 1317, 1525, 1569
MboI GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
MboII GAAGA 9 cut(s) 155, 195, 596, 672, 940, 1046, 1096, 1297, 1503
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 2 cut(s) 694, 1523
MhlI GDGCHC 3 cut(s) 39, 802, 1489
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 8 cut(s) 247, 418, 566, 628, 823, 1329, 1481, 1591
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 7 cut(s) 50, 330, 381, 783, 819, 1200, 1392
MslI CAYNNNNRTG 1 cut(s) 1169
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 3 cut(s) 123, 323, 1299
MspR9I CCNGG 4 cut(s) 124, 921, 1194, 1326
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 3 cut(s) 921, 1194, 1326
MvnI CGCG 2 cut(s) 873, 1229
MwoI GCNNNNNNNGC 8 cut(s) 14, 560, 631, 640, 1219, 1228, 1262, 1271
NciI CCSGG 1 cut(s) 124
NdeII GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
NlaIII CATG 5 cut(s) 489, 624, 1265, 1313, 1381
NlaIV GGNNCC 2 cut(s) 243, 747
NmuCI GTSAC 1 cut(s) 1614
NspI RCATGY 1 cut(s) 1265
NspV TTCGAA 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 1169
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 103
PflFI GACNNNGTC 1 cut(s) 921
PfoI TCCNGGA 2 cut(s) 122, 1324
PinAI ACCGGT 1 cut(s) 1298
PkrI GCNGC 6 cut(s) 7, 370, 627, 645, 847, 850
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 802
Psp6I CCWGG 3 cut(s) 919, 1192, 1324
PspGI CCWGG 3 cut(s) 919, 1192, 1324
PspN4I GGNNCC 2 cut(s) 243, 747
PspPI GGNCC 4 cut(s) 465, 650, 832, 1004
PstI CTGCAG 2 cut(s) 10, 502
PsuI RGATCY 2 cut(s) 694, 1523
PsyI GACNNNGTC 1 cut(s) 921
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 2 cut(s) 12, 1137
RsaNI GTAC 2 cut(s) 11, 1136
RseI CAYNNNNRTG 1 cut(s) 1169
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 7 cut(s) 50, 330, 381, 783, 819, 1200, 1392
SatI GCNGC 6 cut(s) 6, 369, 626, 644, 846, 849
Sau3AI GATC 8 cut(s) 494, 689, 694, 1240, 1281, 1315, 1523, 1567
Sau96I GGNCC 4 cut(s) 465, 650, 832, 1004
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 124, 921, 1194, 1326
SduI GDGCHC 3 cut(s) 39, 802, 1489
SexAI ACCWGGT 1 cut(s) 919
SfaNI GCATC 3 cut(s) 17, 1265, 1438
SfcI CTRYAG 2 cut(s) 6, 498
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 2 cut(s) 832, 1004
SmiMI CAYNNNNRTG 1 cut(s) 1169
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 134
SsiI CCGC 3 cut(s) 615, 704, 750
SspMI CTAG 6 cut(s) 135, 249, 344, 852, 1214, 1223
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 4 cut(s) 122, 919, 1192, 1324
StyI CCWWGG 2 cut(s) 375, 997
TaqI TCGA 6 cut(s) 101, 317, 423, 546, 828, 1132
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 7 cut(s) 50, 330, 381, 783, 819, 1200, 1392
Tru9I TTAA 7 cut(s) 50, 330, 381, 783, 819, 1200, 1392
TscAI CASTG 1 cut(s) 1165
TseFI GTSAC 1 cut(s) 1614
TseI GCWGC 6 cut(s) 5, 368, 625, 643, 845, 848
Tsp45I GTSAC 1 cut(s) 1614
TspDTI ATGAA 8 cut(s) 275, 465, 474, 486, 857, 1047, 1092, 1365
TspGWI ACGGA 2 cut(s) 1504, 1516
TspRI CASTG 1 cut(s) 1165
Tth111I GACNNNGTC 1 cut(s) 921
VpaK11BI GGWCC 2 cut(s) 832, 1004
XagI CCTNNNNNAGG 1 cut(s) 1323
XceI RCATGY 1 cut(s) 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 6 cut(s) 135, 249, 344, 852, 1214, 1223
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.