pycom09g06000

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010928
Physical Location & Seq
Reverse (-)
4458102 .. 4460279
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06000.2

Sequence Viewer

Length: 1218 bp
ATGAGGCTTTCCAAAATTACATGCACTCCCCAACAGGATCGAGCTACAACTGGCTTGAGTGGAGGAAGTTCTTTAGGTCTGCAATACAAGGGTGCATGGTGTACCCCTCCCAGAGTATTTGTGGATTATCAGGAGGAAGTTGTACCGCATTTGGAGCCTGGAATGGTCCCATCAACTATTGATCCAGACGCAGCTGGAACTACAGAAAGAGAGCAAAAAGGTCCTAAAAGGCCTGTCCGCATTAGTGCTTGGAAGCTTGCAAAATTGGATTCCACTGAGGCCATGAGAGCAGCAGCCAAGGCCAGGGCATCATCCTCCGTTCTACGACCACTGGATAAGCCTGATCTTGAACTCAGTTCAAGTGGCAATATGAGTGTGCGGAGTAGTTTAAGCACTGATACCGGGGCAAATAAAGAGATGAAGAATGAACTGAGATTGTCGAGAAATTCCTATGCTCCAAGTCAAGGTAGCCGAGATGAGTATGAAACTGGGACTCAAAGCGTAAGTAGCTTCAGTAGTCCGACCCATGTTCAAGAAGCGGTCGCACTTAGCCCTCTGCCACAGGCTCCGGGTGTGGGACGTTTTAGCTCTGCCACTTCAGTCCCCAGCTTAGTTCCTGACCGTCCATTAACTGCCAAGGCAACATTGCCTAATGTCAGCATGGGATTTGATGAAAGGATCATGCAGAGGGGAAGTACAGCTGATCCGTTACAACTTTCAGCTCCAATTATGCAGAGGGGAAGTACTACTGATTCGATGCTGCTTTCAGCTCCACCTACTTCTCTTTTCAGGGATGTCCGAAGGACATCTGTTGTTTGGGACCAAGAAGCAGGGCGATACATCTCAGTTCCTGTGTCGGCTTCTGAAGCTCGAAACCGGTCATCCATACAAACAGGATTTTCAAATCCTAATGCAGAAGCAAGCTATAGTAGAAGACCAGTTATTCCGCCACGGGTGCCTTCATCTTCTGCAGCAAAGCCTCCAGCACAAGAAGTGGAGAAACTGATGTACACAGGGGATTCTATCTTCTTTGGTGGCCCGCTTTTGAGTGTACCAGTGAGGGATACTTTGAGAAATGAAAGGGATTTGGGTTTAAGAGAGGGCCAAGAGAGGGCAGGGCTGAACTTGCCTAGGGAATCCAGATTCAGACGTGATTCTACCTCAAACCAGCTTCCTGTTTTTATTCCGGGGGGTTTTGAGAACAACTCTTCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

406

Amino Acids

43.83

Weight (kDa)

9.45

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15080 AT4G15080
fragaria_vesca FvH4_6g39520 FvH4_6g39520 FvH4_6g39520
malus_domestica MD09G1139400.v1.1 MD17G1128900.v1.1
prunus_persica Prupe.3G186400_v2.0.a1
pyrus_communis pycom09g06000 pycom17g12090
rosa_chinensis RchiOBHm_Chr2g0153581
rosa_laevigata RLG00000020712
rosa_multiflora Rmu_ssc0000024.1_g000020
rosa_roxburghii Rroxscaffold_2G00094900
rosa_rugosa Rorug02G0440700
rosa_samantha Rh2AG503500 Rh2BG514200 Rh2CG489300 Rh2DG525900
rosa_wichuraiana Rw2G041350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AciI CCGC 6 cut(s) 146, 238, 379, 539, 947, 1040
AclWI GGATC 4 cut(s) 45, 176, 686, 698
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 3 cut(s) 496, 582, 885
AfaI GTAC 6 cut(s) 103, 144, 697, 745, 1010, 1053
AfiI CCNNNNNNNGG 4 cut(s) 303, 464, 575, 1111
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 4 cut(s) 350, 360, 533, 903
AjiI CACGTC 1 cut(s) 1151
AjnI CCWGG 2 cut(s) 157, 302
AlwI GGATC 4 cut(s) 45, 176, 686, 698
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 5 cut(s) 230, 279, 300, 1036, 1102
ApeKI GCWGC 5 cut(s) 191, 290, 293, 760, 971
ApoI RAATTY 1 cut(s) 445
AsiGI ACCGGT 1 cut(s) 876
AspA2I CCTAGG 1 cut(s) 1130
AspS9I GGNCC 5 cut(s) 166, 221, 820, 1037, 1102
AsuC2I CCSGG 3 cut(s) 403, 570, 1188
AvaII GGWCC 3 cut(s) 166, 221, 820
AvrII CCTAGG 1 cut(s) 1130
BanI GGYRCC 1 cut(s) 955
BbsI GAAGAC 1 cut(s) 940
BbvI GCAGC 5 cut(s) 203, 302, 305, 747, 983
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 159, 304
BciVI GTATCC 1 cut(s) 1057
BcnI CCSGG 3 cut(s) 403, 570, 1188
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 3 cut(s) 201, 925, 969
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 5 cut(s) 192, 291, 294, 761, 972
BlnI CCTAGG 1 cut(s) 1130
BlsI GCNGC 5 cut(s) 193, 292, 295, 762, 973
BmcAI AGTACT 1 cut(s) 745
Bme1390I CCNGG 5 cut(s) 159, 304, 403, 570, 1188
Bme18I GGWCC 3 cut(s) 166, 221, 820
BmgBI CACGTC 1 cut(s) 1151
BmgT120I GGNCC 5 cut(s) 166, 221, 820, 1037, 1102
BmiI GGNNCC 5 cut(s) 156, 168, 567, 821, 957
BmrFI CCNGG 5 cut(s) 159, 304, 403, 570, 1188
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 317, 747
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 940
BplI GAGNNNNNCTC 1 cut(s) 1190
BpmI CTGGAG 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 3 cut(s) 403, 570, 1188
BsaJI CCNNGG 7 cut(s) 297, 303, 402, 636, 950, 1130, 1187
BsaWI WCCGGW 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 464, 575, 1111
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 5 cut(s) 55, 336, 493, 938, 1055
Bse3DI GCAATG 1 cut(s) 644
BseBI CCWGG 2 cut(s) 159, 304
BseDI CCNNGG 7 cut(s) 297, 303, 402, 636, 950, 1130, 1187
BseGI GGATG 3 cut(s) 311, 799, 881
BseLI CCNNNNNNNGG 4 cut(s) 303, 464, 575, 1111
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 4 cut(s) 267, 367, 422, 858
BseNI ACTGG 5 cut(s) 55, 336, 493, 938, 1055
BseXI GCAGC 5 cut(s) 203, 302, 305, 747, 983
BseYI CCCAGC 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 5 cut(s) 232, 281, 302, 1038, 1104
BshNI GGYRCC 1 cut(s) 955
BshTI ACCGGT 1 cut(s) 876
BsiEI CGRYCG 1 cut(s) 543
BsiSI CCGG 4 cut(s) 402, 569, 877, 1187
BslFI GGGAC 5 cut(s) 152, 505, 587, 591, 833
BslI CCNNNNNNNGG 4 cut(s) 303, 464, 575, 1111
BsmFI GGGAC 5 cut(s) 152, 505, 587, 591, 833
BsnI GGCC 5 cut(s) 232, 281, 302, 1038, 1104
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 5 cut(s) 37, 181, 343, 678, 703
BspACI CCGC 6 cut(s) 146, 238, 379, 539, 947, 1040
BspANI GGCC 5 cut(s) 232, 281, 302, 1038, 1104
BspCNI CTCAG 4 cut(s) 268, 366, 423, 857
BspLI GGNNCC 5 cut(s) 156, 168, 567, 821, 957
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 4 cut(s) 45, 176, 686, 698
BspT107I GGYRCC 1 cut(s) 955
BsrDI GCAATG 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 876
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 5 cut(s) 55, 336, 493, 938, 1055
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 7 cut(s) 297, 303, 402, 636, 950, 1130, 1187
BssMI GATC 5 cut(s) 37, 181, 343, 678, 703
BssT1I CCWWGG 3 cut(s) 297, 636, 1130
Bst2UI CCWGG 2 cut(s) 159, 304
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 1213
BstAUI TGTACA 1 cut(s) 1008
BstC8I GCNNGC 3 cut(s) 258, 922, 1040
BstDEI CTNAG 6 cut(s) 276, 353, 431, 548, 610, 844
BstDSI CCRYGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 311, 799, 881
BstKTI GATC 5 cut(s) 40, 184, 346, 681, 706
BstMBI GATC 5 cut(s) 37, 181, 343, 678, 703
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 7 cut(s) 154, 287, 299, 507, 866, 955, 1126
BstNI CCWGG 2 cut(s) 159, 304
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 5 cut(s) 157, 302, 401, 568, 1186
BstSFI CTRYAG 3 cut(s) 201, 925, 969
BstV1I GCAGC 5 cut(s) 203, 302, 305, 747, 983
BstV2I GAAGAC 1 cut(s) 940
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 5 cut(s) 232, 281, 302, 1038, 1104
BtgI CCRYGG 1 cut(s) 950
BtrI CACGTC 1 cut(s) 1151
BtsCI GGATG 3 cut(s) 311, 799, 881
BtsIMutI CAGTG 4 cut(s) 273, 329, 393, 1062
Cac8I GCNNGC 3 cut(s) 258, 922, 1040
CaiI CAGNNNCTG 1 cut(s) 851
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 5 cut(s) 166, 221, 820, 1037, 1102
CseI GACGC 1 cut(s) 197
Csp6I GTAC 6 cut(s) 102, 143, 696, 744, 1009, 1052
CspAI ACCGGT 1 cut(s) 876
CviAII CATG 6 cut(s) 21, 96, 283, 527, 661, 682
CviQI GTAC 6 cut(s) 102, 143, 696, 744, 1009, 1052
DdeI CTNAG 6 cut(s) 276, 353, 431, 548, 610, 844
DpnI GATC 5 cut(s) 39, 183, 345, 680, 705
DpnII GATC 5 cut(s) 37, 181, 343, 678, 703
Eam1104I CTCTTC 1 cut(s) 1213
EarI CTCTTC 1 cut(s) 1213
EciI GGCGGA 1 cut(s) 936
Eco130I CCWWGG 3 cut(s) 297, 636, 1130
Eco147I AGGCCT 1 cut(s) 232
Eco47I GGWCC 3 cut(s) 166, 221, 820
Eco57I CTGAAG 3 cut(s) 496, 582, 885
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 157, 302
EcoT14I CCWWGG 3 cut(s) 297, 636, 1130
ErhI CCWWGG 3 cut(s) 297, 636, 1130
FaeI CATG 6 cut(s) 24, 99, 286, 530, 664, 685
FaqI GGGAC 5 cut(s) 152, 505, 587, 591, 833
FatI CATG 6 cut(s) 20, 95, 282, 526, 660, 681
FauI CCCGC 1 cut(s) 1047
Fnu4HI GCNGC 5 cut(s) 192, 291, 294, 761, 972
FokI GGATG 3 cut(s) 298, 806, 868
Fsp4HI GCNGC 5 cut(s) 192, 291, 294, 761, 972
FspBI CTAG 1 cut(s) 1131
GluI GCNGC 5 cut(s) 192, 291, 294, 761, 972
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 5 cut(s) 232, 281, 302, 1038, 1104
HapII CCGG 4 cut(s) 402, 569, 877, 1187
HgaI GACGC 1 cut(s) 197
Hin1II CATG 6 cut(s) 24, 99, 286, 530, 664, 685
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 7 cut(s) 269, 493, 752, 1019, 1136, 1143, 1154
HpaII CCGG 4 cut(s) 402, 569, 877, 1187
Hpy166II GTNNAC 3 cut(s) 102, 1011, 1052
Hpy188I TCNGA 4 cut(s) 522, 800, 865, 1148
Hpy188III TCNNGA 7 cut(s) 131, 185, 347, 441, 533, 617, 1140
Hpy8I GTNNAC 3 cut(s) 102, 1011, 1052
HpyAV CCTTC 2 cut(s) 795, 969
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 2 cut(s) 580, 1150
HpyCH4V TGCA 8 cut(s) 24, 82, 95, 260, 685, 733, 914, 971
HpyF10VI GCNNNNNNNGC 7 cut(s) 154, 287, 299, 507, 866, 955, 1126
HpyF3I CTNAG 6 cut(s) 276, 353, 431, 548, 610, 844
HpySE526I ACGT 2 cut(s) 580, 1150
Hsp92II CATG 6 cut(s) 24, 99, 286, 530, 664, 685
Kzo9I GATC 5 cut(s) 37, 181, 343, 678, 703
LmnI GCTCC 5 cut(s) 154, 460, 571, 727, 775
Lsp1109I GCAGC 5 cut(s) 203, 302, 305, 747, 983
LweI GCATC 2 cut(s) 317, 747
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 2 cut(s) 580, 1150
MaeIII GTNAC 1 cut(s) 708
MalI GATC 5 cut(s) 39, 183, 345, 680, 705
MboI GATC 5 cut(s) 37, 181, 343, 678, 703
MboII GAAGA 5 cut(s) 433, 945, 957, 1018, 1200
MluCI AATT 4 cut(s) 15, 263, 445, 726
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 545
MseI TTAA 3 cut(s) 389, 629, 1094
MspA1I CMGCKG 2 cut(s) 194, 701
MspI CCGG 4 cut(s) 402, 569, 877, 1187
MspR9I CCNGG 5 cut(s) 159, 304, 403, 570, 1188
MvaI CCWGG 2 cut(s) 159, 304
MwoI GCNNNNNNNGC 7 cut(s) 154, 287, 299, 507, 866, 955, 1126
NciI CCSGG 3 cut(s) 403, 570, 1188
NdeII GATC 5 cut(s) 37, 181, 343, 678, 703
NlaIII CATG 6 cut(s) 24, 99, 286, 530, 664, 685
NlaIV GGNNCC 5 cut(s) 156, 168, 567, 821, 957
NmeAIII GCCGAG 1 cut(s) 497
NspI RCATGY 1 cut(s) 24
PceI AGGCCT 1 cut(s) 232
PfeI GAWTC 6 cut(s) 269, 752, 1019, 1136, 1143, 1154
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 5 cut(s) 193, 292, 295, 762, 973
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 157, 302
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 157, 302
PspN4I GGNNCC 5 cut(s) 156, 168, 567, 821, 957
PspPI GGNCC 5 cut(s) 166, 221, 820, 1037, 1102
PspPPI RGGWCCY 1 cut(s) 221
PstI CTGCAG 1 cut(s) 973
PstNI CAGNNNCTG 1 cut(s) 851
PvuII CAGCTG 2 cut(s) 194, 701
RsaI GTAC 6 cut(s) 103, 144, 697, 745, 1010, 1053
RsaNI GTAC 6 cut(s) 102, 143, 696, 744, 1009, 1052
SaqAI TTAA 3 cut(s) 389, 629, 1094
SatI GCNGC 5 cut(s) 192, 291, 294, 761, 972
Sau3AI GATC 5 cut(s) 37, 181, 343, 678, 703
Sau96I GGNCC 5 cut(s) 166, 221, 820, 1037, 1102
ScaI AGTACT 1 cut(s) 745
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 5 cut(s) 159, 304, 403, 570, 1188
SfaNI GCATC 2 cut(s) 317, 747
SfcI CTRYAG 3 cut(s) 201, 925, 969
SinI GGWCC 3 cut(s) 166, 221, 820
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 4 cut(s) 15, 263, 445, 726
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 6 cut(s) 146, 238, 379, 539, 947, 1040
SspMI CTAG 1 cut(s) 1131
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 5 cut(s) 157, 302, 401, 568, 1186
StyI CCWWGG 3 cut(s) 297, 636, 1130
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 2 cut(s) 583, 1153
TaqI TCGA 4 cut(s) 40, 440, 755, 871
TasI AATT 4 cut(s) 15, 263, 445, 726
TatI WGTACW 3 cut(s) 695, 743, 1008
TfiI GAWTC 6 cut(s) 269, 752, 1019, 1136, 1143, 1154
Tru1I TTAA 3 cut(s) 389, 629, 1094
Tru9I TTAA 3 cut(s) 389, 629, 1094
TscAI CASTG 4 cut(s) 280, 336, 400, 1062
TseI GCWGC 5 cut(s) 191, 290, 293, 760, 971
TspDTI ATGAA 6 cut(s) 434, 441, 498, 687, 951, 1092
TspGWI ACGGA 2 cut(s) 307, 696
TspRI CASTG 4 cut(s) 280, 336, 400, 1062
VpaK11BI GGWCC 3 cut(s) 166, 221, 820
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 1130
XspI CTAG 1 cut(s) 1131
ZrmI AGTACT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.