Rorug02G0440700

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010928
Physical Location & Seq
Reverse (-)
56507257 .. 56510476
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0440700.1

Sequence Viewer

Length: 1176 bp
ATGTCGTCGAACGAGCATACCATAGCCTCCCTAATCTCCCAGCTCGTCCTCTCCTTAGACGGCGCCGTTTTGGGCACCATCGTCGCCTTCGCCGCCGTCGATTCCTTCCTCAACTTCAAATCCACCACCTCCGCCCTCCGCAAGATCCGCCAAGCCCCCTCCGTCAAAGTCTCCGATCTCCGCTCCCTAATCCACGAAGACTCCGACCAACCGCAGCCGTCCGGTGCCTCCAAGCTCGTCGTCCTCCGCGGCCGCGTCCAAGCCACACCCGACGCCGACGGAACCTACAAGAGCCTCAAGTCCAGCCCGATCATCAACCCCGATAATAACGAGAACACCACCATCGACGCCGTCATCGTTCAGAGGACGCAACGGCTTTTGTATAACGAGTGGAAGGGTTTTCTTTGGCGGACTTATGATTTGAGAGCTAAATTGGCGAAGCCTTGGAGAGAACAAGAATCCAGCACGATCAAAGTGGTTCCTTTTGTTCTTGGTGAAGCTGGGAATTCCGATTTCGTTGTTCCGAATTCCGATGGCTTAGGACATCCCTTGCCTCTTGTGACAGTTTATCAGCAAAAGCAGCTCTTTAATCCTAGTCCCTTTACATTCCTGCAGAAAATTTTTGGTCATGATTACCCAATCGGTCTGCAAGATGAAGAAAAGGTTCTTCCATTGGGAGTCGAAGTCAGTGCTGTTGGTATCTGCAGTTTCCAAAATGGGATACCGGAAATCAAGTCATGCCGTGATCTTCCCTATTTTATGTCTTTGATGGATAAGGATGAGTTGGTTCTACATCTCGAACACAAGACAAACACATTATTCTGGTTTGGGGTTGGTTTTGGTTTGTTGTCAGTTGGAATCCTCTGCTATGCTGGTGCAAGGAATTGGCACAAATTTAGAGAATGGAGGCAACGAAGGCAGCCACAGCAAGCAAGCGATGCAGCTGGAACCATTGCTGATCCTCAAATTGAAGCAGAAGATGAGGAAGTAGGGGAAGTACCTGATGGGCAGTTATGCGTCATCTGTCTGATGAGGAGAAGACGATCTGCCTTCATTCCGTGCGGGCATCTCGTGTGTTGCCATCTCTGCTGCATATCCATTGAGCAGAGCACGTCACCCAAGTGCCCGGTCTGCAGGCAGGAGATCCGCACTGCAATGCGCATATATGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

391

Amino Acids

43.62

Weight (kDa)

6.51

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 148 - 286 3e-28 E3 Ubiquitin ligase
zf-C3HC4_3 PF13920 336 - 384 3.2e-12 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15080 AT4G15080
fragaria_vesca FvH4_6g39520 FvH4_6g39520 FvH4_6g39520
malus_domestica MD09G1139400.v1.1 MD17G1128900.v1.1
prunus_persica Prupe.3G186400_v2.0.a1
pyrus_communis pycom09g06000 pycom17g12090
rosa_chinensis RchiOBHm_Chr2g0153581
rosa_laevigata RLG00000020712
rosa_multiflora Rmu_ssc0000024.1_g000020
rosa_roxburghii Rroxscaffold_2G00094900
rosa_rugosa Rorug02G0440700
rosa_samantha Rh2AG503500 Rh2BG514200 Rh2CG489300 Rh2DG525900
rosa_wichuraiana Rw2G041350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1160
AccB1I GGYRCC 3 cut(s) 62, 74, 224
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 2 cut(s) 249, 255
AclWI GGATC 3 cut(s) 139, 953, 1138
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 4 cut(s) 505, 526, 618, 893
AcyI GRCGYC 3 cut(s) 63, 273, 348
AfaI GTAC 1 cut(s) 999
AgsI TTSAA 2 cut(s) 118, 971
AjiI CACGTC 1 cut(s) 1113
AleI CACNNNNGTG 1 cut(s) 1120
AluBI AGCT 6 cut(s) 43, 235, 428, 500, 583, 944
AluI AGCT 6 cut(s) 43, 235, 428, 500, 583, 944
Alw21I GWGCWC 1 cut(s) 1112
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 3 cut(s) 139, 953, 1138
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 5 cut(s) 214, 580, 919, 941, 1089
ApoI RAATTY 4 cut(s) 505, 526, 618, 893
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 2 cut(s) 65, 1161
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 2 cut(s) 506, 1107
BaeGI GKGCMC 2 cut(s) 77, 1127
BanI GGYRCC 3 cut(s) 62, 74, 224
BauI CACGAG 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 204, 1045
Bbv12I GWGCWC 1 cut(s) 1112
BbvI GCAGC 5 cut(s) 226, 592, 931, 953, 1076
BccI CCATC 6 cut(s) 86, 350, 527, 763, 998, 1089
BceAI ACGGC 7 cut(s) 50, 76, 80, 202, 335, 389, 726
BcgI CGANNNNNNTGC 4 cut(s) 64, 98, 671, 705
BciVI GTATCC 1 cut(s) 714
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 3 cut(s) 611, 703, 1132
BfoI RGCGCY 1 cut(s) 66
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 8 cut(s) 93, 215, 250, 253, 581, 920, 942, 1090
BlsI GCNGC 8 cut(s) 94, 216, 251, 254, 582, 921, 943, 1091
Bme1390I CCNGG 1 cut(s) 1127
BmgBI CACGTC 1 cut(s) 1113
BmiI GGNNCC 6 cut(s) 64, 76, 226, 283, 480, 949
BmrFI CCNGG 1 cut(s) 1127
BmsI GCATC 2 cut(s) 928, 1075
BpiI GAAGAC 2 cut(s) 204, 1045
Bpu10I CCTNAGC 1 cut(s) 538
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 1127
BsaHI GRCGYC 3 cut(s) 63, 273, 348
BsaJI CCNNGG 2 cut(s) 247, 443
BsaWI WCCGGW 2 cut(s) 221, 724
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 669, 699
Bse3DI GCAATG 2 cut(s) 951, 1161
BseDI CCNNGG 2 cut(s) 247, 443
BseGI GGATG 2 cut(s) 544, 784
BseMI GCAATG 2 cut(s) 951, 1161
BseRI GAGGAG 1 cut(s) 1048
BseSI GKGCMC 2 cut(s) 77, 1127
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 5 cut(s) 226, 592, 931, 953, 1076
BseYI CCCAGC 2 cut(s) 39, 500
Bsh1236I CGCG 2 cut(s) 249, 255
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 3 cut(s) 62, 74, 224
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 1112
BsiSI CCGG 3 cut(s) 222, 725, 1127
BslFI GGGAC 1 cut(s) 582
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 77, 1112, 1127
Bsp143I GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
BspANI GGCC 1 cut(s) 252
BspFNI CGCG 2 cut(s) 249, 255
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 6 cut(s) 64, 76, 226, 283, 480, 949
BspMAI CTGCAG 3 cut(s) 615, 707, 1136
BspPI GGATC 3 cut(s) 139, 953, 1138
BspT107I GGYRCC 3 cut(s) 62, 74, 224
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 951, 1161
BssECI CCNNGG 2 cut(s) 247, 443
BssMI GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
BssNI GRCGYC 3 cut(s) 63, 273, 348
BssSI CACGAG 1 cut(s) 1070
BssT1I CCWWGG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 1070
Bst4CI ACNGT 1 cut(s) 565
BstACI GRCGYC 3 cut(s) 63, 273, 348
BstAPI GCANNNNNTGC 1 cut(s) 938
BstC8I GCNNGC 4 cut(s) 930, 934, 1064, 1136
BstDEI CTNAG 3 cut(s) 55, 538, 1173
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 2 cut(s) 544, 784
BstFNI CGCG 2 cut(s) 249, 255
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 1161
BstKTI GATC 8 cut(s) 147, 178, 312, 471, 748, 961, 1046, 1146
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 9 cut(s) 92, 147, 434, 580, 916, 925, 938, 1086, 1131
BstSCI CCNGG 1 cut(s) 1125
BstSFI CTRYAG 3 cut(s) 611, 703, 1132
BstSLI GKGCMC 2 cut(s) 77, 1127
BstUI CGCG 2 cut(s) 249, 255
BstV1I GCAGC 5 cut(s) 226, 592, 931, 953, 1076
BstV2I GAAGAC 2 cut(s) 204, 1045
BstX2I RGATCY 2 cut(s) 144, 1143
BstYI RGATCY 2 cut(s) 144, 1143
BstZI CGGCCG 1 cut(s) 250
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 951
BtrI CACGTC 1 cut(s) 1113
BtsCI GGATG 2 cut(s) 544, 784
BtsI GCAGTG 1 cut(s) 1149
BtsIMutI CAGTG 2 cut(s) 694, 1149
Cac8I GCNNGC 4 cut(s) 930, 934, 1064, 1136
CciI TCATGA 1 cut(s) 628
CciNI GCGGCCGC 1 cut(s) 250
CfoI GCGC 2 cut(s) 65, 1161
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 5 cut(s) 244, 281, 356, 376, 1006
Csp6I GTAC 1 cut(s) 998
CviAII CATG 2 cut(s) 629, 738
CviQI GTAC 1 cut(s) 998
DdeI CTNAG 3 cut(s) 55, 538, 1173
DinI GGCGCC 1 cut(s) 64
DpnI GATC 8 cut(s) 146, 177, 311, 470, 747, 960, 1045, 1145
DpnII GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
EaeI YGGCCR 1 cut(s) 250
EagI CGGCCG 1 cut(s) 250
EciI GGCGGA 3 cut(s) 121, 137, 424
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 443
Eco52I CGGCCG 1 cut(s) 250
EcoRI GAATTC 2 cut(s) 505, 526
EcoT14I CCWWGG 1 cut(s) 443
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 2 cut(s) 632, 741
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 582
FatI CATG 2 cut(s) 628, 737
FauI CCCGC 1 cut(s) 1055
Fnu4HI GCNGC 8 cut(s) 93, 215, 250, 253, 581, 920, 942, 1090
FokI GGATG 2 cut(s) 531, 791
Fsp4HI GCNGC 8 cut(s) 93, 215, 250, 253, 581, 920, 942, 1090
FspAI RTGCGCAY 1 cut(s) 1160
FspBI CTAG 1 cut(s) 594
FspI TGCGCA 1 cut(s) 1160
GlaI GCGC 2 cut(s) 64, 1160
GluI GCNGC 8 cut(s) 93, 215, 250, 253, 581, 920, 942, 1090
GsaI CCCAGC 2 cut(s) 43, 504
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 222, 725, 1127
HgaI GACGC 5 cut(s) 244, 281, 356, 376, 1006
HhaI GCGC 2 cut(s) 65, 1161
Hin1I GRCGYC 3 cut(s) 63, 273, 348
Hin1II CATG 2 cut(s) 632, 741
Hin6I GCGC 2 cut(s) 63, 1159
HinP1I GCGC 2 cut(s) 63, 1159
HinfI GANTC 6 cut(s) 101, 200, 458, 678, 858, 1169
HpaII CCGG 3 cut(s) 222, 725, 1127
HphI GGTGA 2 cut(s) 506, 1107
Hpy188I TCNGA 7 cut(s) 175, 205, 363, 511, 525, 532, 1029
Hpy188III TCNNGA 2 cut(s) 629, 797
Hpy99I CGWCG 7 cut(s) 10, 86, 101, 242, 275, 281, 350
HpyAV CCTTC 5 cut(s) 97, 115, 388, 909, 1060
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 1112
HpyCH4V TGCA 8 cut(s) 613, 649, 705, 878, 941, 1092, 1134, 1154
HpyF10VI GCNNNNNNNGC 9 cut(s) 92, 147, 434, 580, 916, 925, 938, 1086, 1131
HpyF3I CTNAG 3 cut(s) 55, 538, 1173
HpySE526I ACGT 1 cut(s) 1112
Hsp92I GRCGYC 3 cut(s) 63, 273, 348
Hsp92II CATG 2 cut(s) 632, 741
HspAI GCGC 2 cut(s) 63, 1159
KasI GGCGCC 1 cut(s) 62
KspI CCGCGG 1 cut(s) 250
Kzo9I GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 5 cut(s) 226, 592, 931, 953, 1076
LweI GCATC 2 cut(s) 928, 1075
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 1112
MaeIII GTNAC 2 cut(s) 559, 1113
MalI GATC 8 cut(s) 146, 177, 311, 470, 747, 960, 1045, 1145
MbiI CCGCTC 1 cut(s) 183
MboI GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
MboII GAAGA 6 cut(s) 209, 659, 668, 740, 989, 1050
MflI RGATCY 2 cut(s) 144, 1143
MhlI GDGCHC 3 cut(s) 77, 1112, 1127
MluCI AATT 7 cut(s) 431, 505, 526, 618, 883, 893, 966
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 3 cut(s) 194, 687, 1163
MmeI TCCRAC 2 cut(s) 228, 835
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 2 cut(s) 1120, 1154
MspA1I CMGCKG 2 cut(s) 249, 944
MspI CCGG 3 cut(s) 222, 725, 1127
MspR9I CCNGG 1 cut(s) 1127
MvnI CGCG 2 cut(s) 249, 255
MwoI GCNNNNNNNGC 9 cut(s) 92, 147, 434, 580, 916, 925, 938, 1086, 1131
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 1127
NdeII GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
NlaIII CATG 2 cut(s) 632, 741
NlaIV GGNNCC 6 cut(s) 64, 76, 226, 283, 480, 949
NmuCI GTSAC 2 cut(s) 559, 1113
NotI GCGGCCGC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 1120
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 201, 354
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 101, 458, 858
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 8 cut(s) 94, 216, 251, 254, 582, 921, 943, 1091
PleI GAGTC 3 cut(s) 194, 686, 1163
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 3 cut(s) 194, 686, 1163
PspFI CCCAGC 2 cut(s) 39, 500
PspN4I GGNNCC 6 cut(s) 64, 76, 226, 283, 480, 949
PstI CTGCAG 3 cut(s) 615, 707, 1136
PsuI RGATCY 2 cut(s) 144, 1143
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 1 cut(s) 999
RsaNI GTAC 1 cut(s) 998
RseI CAYNNNNRTG 2 cut(s) 1120, 1154
SacII CCGCGG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 8 cut(s) 93, 215, 250, 253, 581, 920, 942, 1090
Sau3AI GATC 8 cut(s) 144, 175, 309, 468, 745, 958, 1043, 1143
SchI GAGTC 3 cut(s) 194, 687, 1163
ScrFI CCNGG 1 cut(s) 1127
SduI GDGCHC 3 cut(s) 77, 1112, 1127
SfaNI GCATC 2 cut(s) 928, 1075
SfcI CTRYAG 3 cut(s) 611, 703, 1132
SfoI GGCGCC 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 250
SgrBI CCGCGG 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 1120, 1154
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 7 cut(s) 431, 505, 526, 618, 883, 893, 966
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 1125
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 1115
TaqI TCGA 5 cut(s) 8, 99, 345, 681, 798
TaqII GACCGA 1 cut(s) 632
TasI AATT 7 cut(s) 431, 505, 526, 618, 883, 893, 966
TauI GCSGC 3 cut(s) 95, 252, 255
TfiI GAWTC 3 cut(s) 101, 458, 858
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 694, 1156
TseFI GTSAC 2 cut(s) 559, 1113
TseI GCWGC 5 cut(s) 214, 580, 919, 941, 1089
Tsp45I GTSAC 2 cut(s) 559, 1113
TspDTI ATGAA 2 cut(s) 669, 1042
TspGWI ACGGA 3 cut(s) 151, 294, 1047
TspRI CASTG 2 cut(s) 694, 1156
Tth111I GACNNNGTC 1 cut(s) 350
XapI RAATTY 4 cut(s) 505, 526, 618, 893
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.