pycom10g03100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0020212
Physical Location & Seq
Reverse (-)
3446891 .. 3447187
297 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGAGCTTGGCATGCCTTGTGTGCAGCGCAGAAAGTCCATCACACTCGTTTAGGAGTTGCTCTGTATCAAGCACAGAAAACAATGGAAGATGTTCTGCTATTGCCAACTGCTTAACACGGAGGCCATCTCTTCCGCTGCCAACACATTCCAACATTGCATCATCCAAAGTAACCCCGCAACCAACTCTTTCAAATGGTGGTTCCATACCAGGTACCCCAAGGCTAGTGCGAAGCCGGGCTGTGAGAAGGGATATCGTGAGAGACTGGAACTTTGACGAGGCTGTGATGGGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.53

Weight (kDa)

9.92

Isoelectric Point (pI)

73.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71865
malus_domestica MD05G1038600.v1.1 MD10G1044400.v1.1
prunus_persica Prupe.8G051200_v2.0.a1
pyrus_communis pycom05g03150 pycom10g03100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 2 cut(s) 134, 176
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 24, 136
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 91
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 236
BanI GGYRCC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 36, 123
BccI CCATC 3 cut(s) 46, 133, 280
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 224
BisI GCNGC 2 cut(s) 25, 137
BlsI GCNGC 2 cut(s) 26, 138
Bme1390I CCNGG 2 cut(s) 210, 236
BmiI GGNNCC 2 cut(s) 202, 214
BmrFI CCNGG 2 cut(s) 210, 236
BmsI GCATC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 36, 123
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 124
BspACI CCGC 2 cut(s) 134, 176
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 202, 214
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 12, 21
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 208, 234
BstV1I GCAGC 2 cut(s) 36, 123
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 12
CviJI RGCY 6 cut(s) 6, 124, 223, 234, 239, 281
CviKI_1 RGCY 6 cut(s) 6, 124, 223, 234, 239, 281
CviQI GTAC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 15
FaiI YATR 2 cut(s) 13, 206
FatI CATG 1 cut(s) 11
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 25, 137
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 25, 137
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 25, 137
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 235
HhaI GCGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HpaII CCGG 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 24, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 21
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 27
KpnI GGTACC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 195, 222, 248, 250
Lsp1109I GCAGC 2 cut(s) 36, 123
LweI GCATC 1 cut(s) 167
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 2 cut(s) 99, 122
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 114, 271
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 210, 236
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 12, 21
NciI CCSGG 1 cut(s) 236
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 202, 214
NspI RCATGY 1 cut(s) 15
PaeI GCATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 26, 138
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 202, 214
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 25, 137
ScrFI CCNGG 2 cut(s) 210, 236
SetI ASST 2 cut(s) 8, 214
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 167
SphI GCATGC 1 cut(s) 15
SsiI CCGC 2 cut(s) 134, 176
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 208, 234
StyI CCWWGG 1 cut(s) 218
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseI GCWGC 2 cut(s) 24, 136
TspGWI ACGGA 1 cut(s) 133
XceI RCATGY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.