pycom10g14120

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0002498
Physical Location & Seq
Reverse (-)
17519680 .. 17522690
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1542 bp
ATGCTTCCGGCTCAATTTGATGATTATCATACAATGCTGAGATTTATGAAGGCGAGGAAGTTCGACATTGATAAATCTCTTCAAATGTGGGCCGAAATGCTCAACTGGAGGAGAGAGTTTGGAGTAGAATCTATTGTGAAGGATTTCGTGTACGGTGAATATGAAGAGGTTCAGCGTTTTTATCCTCATGCTTATCATGGGGTCGACAAGGCAGGACGGCCTGTTTATATTGAAAGACTTGGAAAAGTTGAACCTGGCAAGCTAATGAATGTCACCACAGTGGAACGGTTTTTAAAGTATCATGTCCAGGGTTTTGAGAAGGCTTTTGCTGAGAAATTCCCGGCATGTTCTATTGTGGCCAAAAGGCATATAGATTCGACGACTGCTATAATAGATGTCCAGGGGATGAACTGGATGAGCTTTGGCAAGGTTGCGCATGACCTTGTTACACGCATTCAGAAAATGGATGGCGATAACTATCCTGAGACGTTAAATCAAATGTTTGTGGTAAATGCTGGTAACGGATTCAAGCTACTTTGGAACACAGCAAAAGGGTTTCTTGACCCAAGGACTACTGGAAAGATACATGTCTTAGGCAACAGATTTCAAAACAAGCTTTTGGAAATCATAGACTCAAGTCAACTTCCGGATTTCCTTGGGGGAACTTGCTCGTGTCCAAATGAAGGCGGGTGCCTTAGGTCTGGGAAGGGACCCTGGAATGATCCAGAAATAATGAAACTGGTACACATTGGAGAAGCAATGTACTTGAGAAAAATCAAAAGTTCTTCTGATGGTGATGATTTTGGAATCAAGCGGCTTACCCTTAAGACTACAGATAGTGAAATAGTATCTGCAGCTGAGTCGGGATCAGAAATGAGGGCAAGTACTTCTGCCTTCATGCAGCTATCAAAGTCTCAATCTGACGAAGAGAGGGCAACCGACTCTGCATCTCCCTGCAGCCTAGTTGAATCAGGCAGTGCTGCGGGAAGAATGGAAGTTGCTAATTCAAGTTTAACAAGTGATTCACCCATGAACTTTAACCCGACAAGGTCGCTGAAGACATCCATTCCACATGTAGCAAGTTTAACCATTCACTTCATACTCAAAGTATTAACAGGCATATGTCTCATATTCCCAATGTTAGAGAGGATATTTGCAGCACATTATTCAGAAAGCCGCTTAAAAACACCATGCAAATCTCCGCCACTTGAAAATTCAAGCTCTCAGGAACAACAGTATTCACAGGGAACAGATGTAGACCCTCTCTGGCAGAGGCTGCAGCAATTAGAAGTATTGGTTACCAATTTGATAAACAAACCTATTAAAATTCCTCAAGAGAAAGAAGACATGCTTCACGAATCTTTAAGTCGCATTAAATCTATAGAGTACGACTTACAGAAGACAAAGAAAGCATTGTTTGCAACTGCATCAAAACAAGTGGAGCTTGCGGAGTCGCTCGAAAGTTTAAAGGAGGACAGCTTAACAGGATCAAACTCATGTTGGCCAAGAAGTTACAGTAATAACCACGACCCAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

514

Amino Acids

57.74

Weight (kDa)

6.69

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 65 - 221 7.3e-28 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 690
AccI GTMKAC 2 cut(s) 204, 1257
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 6 cut(s) 687, 814, 983, 1177, 1202, 1448
AclWI GGATC 3 cut(s) 716, 874, 1495
AcoI YGGCCR 2 cut(s) 357, 1502
AcsI RAATTY 3 cut(s) 335, 1213, 1326
AcuI CTGAAG 1 cut(s) 1076
AfaI GTAC 5 cut(s) 152, 744, 764, 886, 1388
AfiI CCNNNNNNNGG 1 cut(s) 683
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 2 cut(s) 586, 1072
AgsI TTSAA 9 cut(s) 83, 233, 251, 529, 608, 968, 1008, 1211, 1218
AjnI CCWGG 5 cut(s) 253, 306, 399, 713, 1531
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 9 cut(s) 262, 420, 532, 616, 857, 904, 1221, 1444, 1479
AluI AGCT 9 cut(s) 262, 420, 532, 616, 857, 904, 1221, 1444, 1479
Alw26I GTCTC 3 cut(s) 479, 918, 1130
AlwI GGATC 3 cut(s) 716, 874, 1495
AlwNI CAGNNNCTG 1 cut(s) 1276
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 4 cut(s) 90, 218, 357, 1502
ApeKI GCWGC 7 cut(s) 854, 901, 957, 980, 1157, 1276, 1279
ApoI RAATTY 3 cut(s) 335, 1213, 1326
Asp700I GAANNNNTTC 2 cut(s) 143, 168
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 2 cut(s) 90, 710
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 4 cut(s) 167, 265, 806, 1017
AvaII GGWCC 1 cut(s) 710
AxyI CCTNAGG 1 cut(s) 695
BalI TGGCCA 2 cut(s) 359, 1504
BanI GGYRCC 1 cut(s) 690
BauI CACGAG 1 cut(s) 670
BbsI GAAGAC 3 cut(s) 1064, 1350, 1406
BbvI GCAGC 7 cut(s) 866, 913, 967, 969, 1169, 1263, 1291
BccI CCATC 2 cut(s) 461, 785
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 843, 877
BciT130I CCWGG 5 cut(s) 255, 308, 401, 715, 1533
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 3 cut(s) 479, 918, 1130
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 5 cut(s) 831, 852, 955, 1277, 1380
BfrI CTTAAG 1 cut(s) 824
BisI GCNGC 9 cut(s) 815, 855, 902, 958, 981, 1158, 1177, 1277, 1280
BlsI GCNGC 9 cut(s) 816, 856, 903, 959, 982, 1159, 1178, 1278, 1281
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 6 cut(s) 255, 308, 341, 401, 715, 1533
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 90, 710
BmiI GGNNCC 3 cut(s) 692, 711, 712
BmrFI CCNGG 6 cut(s) 255, 308, 341, 401, 715, 1533
BmsI GCATC 2 cut(s) 956, 1436
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 3 cut(s) 1064, 1350, 1406
BpmI CTGGAG 1 cut(s) 127
BpuEI CTTGAG 3 cut(s) 619, 787, 1317
BpuMI CCSGG 1 cut(s) 341
BsaBI GATNNNNATC 2 cut(s) 24, 477
BsaJI CCNNGG 6 cut(s) 307, 400, 566, 655, 713, 1531
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 4 cut(s) 110, 416, 580, 744
Bse21I CCTNAGG 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 2 cut(s) 24, 477
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 5 cut(s) 255, 308, 401, 715, 1533
BseDI CCNNGG 6 cut(s) 307, 400, 566, 655, 713, 1531
BseGI GGATG 4 cut(s) 411, 420, 472, 1061
BseJI GATNNNNATC 2 cut(s) 24, 477
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 5 cut(s) 29, 321, 474, 849, 1238
BseNI ACTGG 4 cut(s) 110, 416, 580, 744
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 7 cut(s) 866, 913, 967, 969, 1169, 1263, 1291
BshFI GGCC 4 cut(s) 92, 220, 359, 1504
BshNI GGYRCC 1 cut(s) 690
BsiSI CCGG 3 cut(s) 8, 341, 647
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 479, 918, 1130
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 4 cut(s) 92, 220, 359, 1504
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 3 cut(s) 721, 866, 1487
BspACI CCGC 6 cut(s) 687, 814, 983, 1177, 1202, 1448
BspANI GGCC 4 cut(s) 92, 220, 359, 1504
BspCNI CTCAG 5 cut(s) 30, 322, 475, 850, 1237
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 692, 711, 712
BspMAI CTGCAG 3 cut(s) 856, 959, 1281
BspPI GGATC 3 cut(s) 716, 874, 1495
BspT107I GGYRCC 1 cut(s) 690
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 4 cut(s) 110, 416, 580, 744
BssECI CCNNGG 6 cut(s) 307, 400, 566, 655, 713, 1531
BssMI GATC 3 cut(s) 721, 866, 1487
BssSI CACGAG 1 cut(s) 670
BssT1I CCWWGG 2 cut(s) 566, 655
Bst2BI CACGAG 1 cut(s) 670
Bst2UI CCWGG 5 cut(s) 255, 308, 401, 715, 1533
Bst4CI ACNGT 5 cut(s) 155, 280, 288, 1236, 1517
Bst6I CTCTTC 3 cut(s) 84, 159, 921
BstAFI CTTAAG 1 cut(s) 824
BstAPI GCANNNNNTGC 2 cut(s) 1276, 1418
BstC8I GCNNGC 2 cut(s) 260, 1446
BstDEI CTNAG 7 cut(s) 38, 330, 483, 592, 695, 858, 1224
BstEII GGTNACC 1 cut(s) 1297
BstF5I GGATG 4 cut(s) 411, 420, 472, 1061
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 724, 869, 1490
BstMAI GTCTC 3 cut(s) 479, 918, 1130
BstMBI GATC 3 cut(s) 721, 866, 1487
BstMWI GCNNNNNNNGC 2 cut(s) 1276, 1418
BstNI CCWGG 5 cut(s) 255, 308, 401, 715, 1533
BstNSI RCATGY 4 cut(s) 348, 590, 1076, 1351
BstPAI GACNNNNGTC 1 cut(s) 636
BstPI GGTNACC 1 cut(s) 1297
BstSCI CCNGG 6 cut(s) 253, 306, 339, 399, 713, 1531
BstSFI CTRYAG 5 cut(s) 831, 852, 955, 1277, 1380
BstV1I GCAGC 7 cut(s) 866, 913, 967, 969, 1169, 1263, 1291
BstV2I GAAGAC 3 cut(s) 1064, 1350, 1406
Bsu36I CCTNAGG 1 cut(s) 695
BsuRI GGCC 4 cut(s) 92, 220, 359, 1504
BtsCI GGATG 4 cut(s) 411, 420, 472, 1061
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 2 cut(s) 285, 982
Cac8I GCNNGC 2 cut(s) 260, 1446
CaiI CAGNNNCTG 1 cut(s) 1276
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 90, 710
Csp6I GTAC 5 cut(s) 151, 743, 763, 885, 1387
CspCI CAANNNNNGTGG 2 cut(s) 1419, 1454
CviQI GTAC 5 cut(s) 151, 743, 763, 885, 1387
DdeI CTNAG 7 cut(s) 38, 330, 483, 592, 695, 858, 1224
DpnI GATC 3 cut(s) 723, 868, 1489
DpnII GATC 3 cut(s) 721, 866, 1487
DraI TTTAAA 2 cut(s) 294, 1467
EaeI YGGCCR 2 cut(s) 357, 1502
Eam1104I CTCTTC 3 cut(s) 84, 159, 921
EarI CTCTTC 3 cut(s) 84, 159, 921
EciI GGCGGA 1 cut(s) 1191
Eco130I CCWWGG 2 cut(s) 566, 655
Eco47I GGWCC 1 cut(s) 710
Eco57I CTGAAG 1 cut(s) 1076
Eco81I CCTNAGG 1 cut(s) 695
Eco91I GGTNACC 1 cut(s) 1297
EcoO109I RGGNCCY 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 1297
EcoRII CCWGG 5 cut(s) 253, 306, 399, 713, 1531
EcoT14I CCWWGG 2 cut(s) 566, 655
ErhI CCWWGG 2 cut(s) 566, 655
Esp3I CGTCTC 1 cut(s) 479
FalI AAGNNNNNCTT 6 cut(s) 543, 575, 1335, 1367, 1428, 1460
FaqI GGGAC 1 cut(s) 723
FauI CCCGC 2 cut(s) 680, 976
FauNDI CATATG 1 cut(s) 1121
FblI GTMKAC 2 cut(s) 204, 1257
Fnu4HI GCNGC 9 cut(s) 815, 855, 902, 958, 981, 1158, 1177, 1277, 1280
FokI GGATG 4 cut(s) 418, 427, 479, 1048
Fsp4HI GCNGC 9 cut(s) 815, 855, 902, 958, 981, 1158, 1177, 1277, 1280
FspBI CTAG 1 cut(s) 962
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 1 cut(s) 435
GluI GCNGC 9 cut(s) 815, 855, 902, 958, 981, 1158, 1177, 1277, 1280
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 4 cut(s) 92, 220, 359, 1504
HapII CCGG 3 cut(s) 8, 341, 647
HhaI GCGC 1 cut(s) 436
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 2 cut(s) 205, 641
HindII GTYRAC 2 cut(s) 205, 641
HindIII AAGCTT 1 cut(s) 614
HpaII CCGG 3 cut(s) 8, 341, 647
HphI GGTGA 4 cut(s) 167, 265, 806, 1017
Hpy166II GTNNAC 5 cut(s) 151, 205, 641, 745, 1258
Hpy188I TCNGA 5 cut(s) 459, 790, 871, 922, 1171
Hpy188III TCNNGA 8 cut(s) 482, 560, 647, 725, 864, 1226, 1334, 1355
Hpy8I GTNNAC 5 cut(s) 151, 205, 641, 745, 1258
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 6 cut(s) 43, 133, 313, 677, 700, 904
HpyCH4III ACNGT 5 cut(s) 155, 280, 288, 1236, 1517
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 9 cut(s) 854, 901, 947, 957, 1157, 1194, 1279, 1421, 1427
HpyF10VI GCNNNNNNNGC 2 cut(s) 1276, 1418
HpyF3I CTNAG 7 cut(s) 38, 330, 483, 592, 695, 858, 1224
HpySE526I ACGT 1 cut(s) 488
HspAI GCGC 1 cut(s) 434
KflI GGGWCCC 1 cut(s) 710
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 3 cut(s) 721, 866, 1487
LmnI GCTCC 1 cut(s) 1441
Lsp1109I GCAGC 7 cut(s) 866, 913, 967, 969, 1169, 1263, 1291
LweI GCATC 2 cut(s) 956, 1436
MaeI CTAG 1 cut(s) 962
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 5 cut(s) 271, 445, 518, 1297, 1511
MalI GATC 3 cut(s) 723, 868, 1489
MboI GATC 3 cut(s) 721, 866, 1487
MboII GAAGA 8 cut(s) 71, 176, 777, 938, 999, 1069, 1355, 1411
MlsI TGGCCA 2 cut(s) 359, 1504
MluCI AATT 7 cut(s) 14, 335, 1003, 1213, 1283, 1303, 1326
MluNI TGGCCA 2 cut(s) 359, 1504
MlyI GAGTC 4 cut(s) 626, 869, 935, 1460
Mox20I TGGCCA 2 cut(s) 359, 1504
MroI TCCGGA 1 cut(s) 646
MroXI GAANNNNTTC 2 cut(s) 143, 168
MscI TGGCCA 2 cut(s) 359, 1504
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 2 cut(s) 359, 1504
MspA1I CMGCKG 1 cut(s) 857
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 3 cut(s) 8, 341, 647
MspR9I CCNGG 6 cut(s) 255, 308, 341, 401, 715, 1533
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 5 cut(s) 255, 308, 401, 715, 1533
MwoI GCNNNNNNNGC 2 cut(s) 1276, 1418
NciI CCSGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 1121
NdeII GATC 3 cut(s) 721, 866, 1487
NlaIV GGNNCC 3 cut(s) 692, 711, 712
NmuCI GTSAC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 435
NspI RCATGY 4 cut(s) 348, 590, 1076, 1351
OliI CACNNNNGTG 1 cut(s) 278
PciI ACATGT 2 cut(s) 586, 1072
PctI GAATGC 1 cut(s) 453
PdmI GAANNNNTTC 2 cut(s) 143, 168
PfeI GAWTC 7 cut(s) 128, 374, 525, 807, 968, 1022, 1358
PflFI GACNNNGTC 1 cut(s) 1048
PkrI GCNGC 9 cut(s) 816, 856, 903, 959, 982, 1159, 1178, 1278, 1281
PleI GAGTC 4 cut(s) 626, 868, 935, 1459
PpsI GAGTC 4 cut(s) 626, 868, 935, 1459
PpuMI RGGWCCY 1 cut(s) 710
PscI ACATGT 2 cut(s) 586, 1072
PshAI GACNNNNGTC 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 710
Psp6I CCWGG 5 cut(s) 253, 306, 399, 713, 1531
PspEI GGTNACC 1 cut(s) 1297
PspGI CCWGG 5 cut(s) 253, 306, 399, 713, 1531
PspN4I GGNNCC 3 cut(s) 692, 711, 712
PspPI GGNCC 2 cut(s) 90, 710
PspPPI RGGWCCY 1 cut(s) 710
PstI CTGCAG 3 cut(s) 856, 959, 1281
PstNI CAGNNNCTG 1 cut(s) 1276
PsyI GACNNNGTC 1 cut(s) 1048
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 5 cut(s) 152, 744, 764, 886, 1388
RsaNI GTAC 5 cut(s) 151, 743, 763, 885, 1387
RseI CAYNNNNRTG 1 cut(s) 278
SalI GTCGAC 1 cut(s) 203
SatI GCNGC 9 cut(s) 815, 855, 902, 958, 981, 1158, 1177, 1277, 1280
Sau3AI GATC 3 cut(s) 721, 866, 1487
Sau96I GGNCC 2 cut(s) 90, 710
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 4 cut(s) 626, 869, 935, 1460
ScrFI CCNGG 6 cut(s) 255, 308, 341, 401, 715, 1533
SfaNI GCATC 2 cut(s) 956, 1436
SfcI CTRYAG 5 cut(s) 831, 852, 955, 1277, 1380
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 4 cut(s) 634, 766, 824, 1332
SmoI CTYRAG 4 cut(s) 634, 766, 824, 1332
Sse9I AATT 7 cut(s) 14, 335, 1003, 1213, 1283, 1303, 1326
SsiI CCGC 6 cut(s) 687, 814, 983, 1177, 1202, 1448
SspMI CTAG 1 cut(s) 962
StyD4I CCNGG 6 cut(s) 253, 306, 339, 399, 713, 1531
StyI CCWWGG 2 cut(s) 566, 655
TaaI ACNGT 5 cut(s) 155, 280, 288, 1236, 1517
TaiI ACGT 1 cut(s) 491
TaqI TCGA 4 cut(s) 63, 204, 377, 1458
TasI AATT 7 cut(s) 14, 335, 1003, 1213, 1283, 1303, 1326
TatI WGTACW 2 cut(s) 762, 884
TauI GCSGC 2 cut(s) 817, 1179
TfiI GAWTC 7 cut(s) 128, 374, 525, 807, 968, 1022, 1358
TscAI CASTG 2 cut(s) 285, 982
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 7 cut(s) 854, 901, 957, 980, 1157, 1276, 1279
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 9 cut(s) 62, 177, 281, 422, 696, 749, 886, 1046, 1087
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 2 cut(s) 285, 982
Tth111I GACNNNGTC 1 cut(s) 1048
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 3 cut(s) 335, 1213, 1326
XceI RCATGY 4 cut(s) 348, 590, 1076, 1351
XmiI GTMKAC 2 cut(s) 204, 1257
XmnI GAANNNNTTC 2 cut(s) 143, 168
XspI CTAG 1 cut(s) 962
ZrmI AGTACT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.