Rh6CG281500

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002498
Physical Location & Seq
Reverse (-)
45917534 .. 45923428
5895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG281500.1

Sequence Viewer

Length: 1338 bp
ATGCCAGGTGAAGTAGTTTCATTTCAAGAGGATGACAAGTCTAGGACTTTTGACATTGAAACCTCCGAGGACGAGAGGCGGAGGACTCGTAGCAGATCTCTTAAGAAAAGGACTGCCAATGCTTCTACGAGGTTAACAAATACTCTTAGAAGGCGCAGCAGCAAACGTGTCGCCAATTGTCGATATGCATTGATATCAGTTGATGATGTAAGGGATGCTGAGGAGGAAGAAGCTGTCATCGCATTTCGCGAGGCATTGGTTGCTAGGAATATGCTACCTGTAAACTATGATGATTATCATACAATGCTGAGATTCTTAAAGGCAAGGAAGTTTGACATGGATAAAACCCTTCACATGTGGGCAGAAATGCTCAACTGGAGAAAAGAGTTTGGAGTAGAATATATTGTGAAGGATTTTACATACAGTGAGTGTGAAGAGGTTCAACGTTTTTATCCTCATGGTTATCATGGTGTAGACCGGGAGGGACGGCCTGTATATATTGAAAGACTTGGCAAAGTTGAACCTAGCAAGCTAATGAATGTCACCACAGTGGATCGATTTCTAAAATATCATGTCCAAGGTTTTGAGAAGGCTTTTGCTGAGAAGTTCCCAGCATGTTCTATTGCAGCCAAAAGGCATATAGATTCTACGACAACTATACTAGATGTCCAGGGGCTGAATTGGGTGAGTTTTGGCAAGGTTGCACATGACCTTGTTATGCGCATGCAGAAAATTGATGGAGATAATTATCCTGAGACATTGCATCAGATGTTTGTGGTAAATGCTGGTAATGGATTCAAGCTGCTTTGGAACACAGCAAAAGGCTTTCTTGATCCAAGAACTACCAGCAAGATACATGTGTTGGGCAACAGATATCGAAACAAGTTGTTGGAAGTTGTAGACTCAAGTCAACTTCCTGACTTCCTTGGGGGAGATTGCTCGTGTCCAAATGAAGGCGGGTGCCTTAGGTCTGGCAAGGGACCCTGGAATGATCCAGAAATTATGAAACTCGTACATATGGGAGAAGCAATGTACTTGAGGAAAATCAATGGTTCTTCTGATGGCGATGATTTAGGAGTCAAGCTGCGTGCCTCTAAGGTCACAGACAGTGAAATAATATCTACAGAGTCTGGATCAGATATGAGGTCAAGTGCCTCTGGCATCATGGAACTACCAATTTCTCATTTTCACAATGAGAGGTCAAGTGACTCTGCATCTATTTGCAGCCTCGTTGAACCTGTTAGTGCTGCTGGAAGAGTGGATGGTGCTAATTCAAATTCAACAAGTACGTCATCTATCATGGCTGTTTGCATTTATTCAGGACATAGCATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

445

Amino Acids

50.3

Weight (kDa)

6.9

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 154 - 311 2.3e-29 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 960
AccI GTMKAC 2 cut(s) 474, 900
AccII CGCG 1 cut(s) 249
AciI CCGC 2 cut(s) 79, 957
AclI AACGTT 1 cut(s) 445
AclWI GGATC 4 cut(s) 561, 827, 986, 1141
AcsI RAATTY 1 cut(s) 1276
AfaI GTAC 3 cut(s) 1014, 1034, 1288
AfiI CCNNNNNNNGG 1 cut(s) 953
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 3 cut(s) 166, 354, 856
AgsI TTSAA 9 cut(s) 26, 59, 443, 503, 521, 799, 1235, 1275, 1281
AjnI CCWGG 3 cut(s) 4, 669, 983
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 4 cut(s) 233, 532, 802, 1084
AluI AGCT 4 cut(s) 233, 532, 802, 1084
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 4 cut(s) 561, 827, 986, 1141
AlwNI CAGNNNCTG 2 cut(s) 676, 1130
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 7 cut(s) 156, 159, 626, 802, 1084, 1224, 1247
ApoI RAATTY 1 cut(s) 1276
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 2 cut(s) 156, 723
AspS9I GGNCC 1 cut(s) 980
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 20, 535, 697
AvaII GGWCC 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 965
BaeI ACNNNNGTAYC 2 cut(s) 845, 878
BanI GGYRCC 1 cut(s) 960
BauI CACGAG 1 cut(s) 940
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 7 cut(s) 168, 171, 638, 789, 1071, 1234, 1236
BccI CCATC 3 cut(s) 731, 1055, 1256
BceAI ACGGC 1 cut(s) 503
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 3 cut(s) 6, 671, 985
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 5 cut(s) 42, 264, 525, 662, 1336
BfmI CTRYAG 1 cut(s) 1122
BfrI CTTAAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 95
BisI GCNGC 7 cut(s) 157, 160, 627, 803, 1085, 1225, 1248
BlsI GCNGC 7 cut(s) 158, 161, 628, 804, 1086, 1226, 1249
Bme1390I CCNGG 4 cut(s) 6, 479, 671, 985
Bme18I GGWCC 1 cut(s) 980
BmgT120I GGNCC 1 cut(s) 980
BmiI GGNNCC 3 cut(s) 962, 981, 982
BmrFI CCNGG 4 cut(s) 6, 479, 671, 985
BmsI GCATC 4 cut(s) 205, 772, 1170, 1223
BoxI GACNNNNGTC 1 cut(s) 906
BpmI CTGGAG 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 889, 1057
BpuMI CCSGG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 556
BsaBI GATNNNNATC 2 cut(s) 294, 747
BsaJI CCNNGG 5 cut(s) 66, 577, 670, 925, 983
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 953
Bse1I ACTGG 1 cut(s) 380
Bse21I CCTNAGG 1 cut(s) 965
Bse3DI GCAATG 2 cut(s) 758, 1035
Bse8I GATNNNNATC 2 cut(s) 294, 747
BseBI CCWGG 3 cut(s) 6, 671, 985
BseCI ATCGAT 1 cut(s) 556
BseDI CCNNGG 5 cut(s) 66, 577, 670, 925, 983
BseGI GGATG 3 cut(s) 37, 220, 1267
BseJI GATNNNNATC 2 cut(s) 294, 747
BseLI CCNNNNNNNGG 1 cut(s) 953
BseMI GCAATG 2 cut(s) 758, 1035
BseMII CTCAG 4 cut(s) 210, 299, 591, 744
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 7 cut(s) 168, 171, 638, 789, 1071, 1234, 1236
BseYI CCCAGC 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 490
BshNI GGYRCC 1 cut(s) 960
BshVI ATCGAT 1 cut(s) 556
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 2 cut(s) 498, 993
BslI CCNNNNNNNGG 1 cut(s) 953
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 2 cut(s) 498, 993
BsnI GGCC 1 cut(s) 490
Bsp143I GATC 5 cut(s) 95, 553, 832, 991, 1133
Bsp68I TCGCGA 1 cut(s) 249
BspACI CCGC 2 cut(s) 79, 957
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 4 cut(s) 211, 300, 592, 745
BspDI ATCGAT 1 cut(s) 556
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 962, 981, 982
BspPI GGATC 4 cut(s) 561, 827, 986, 1141
BspT107I GGYRCC 1 cut(s) 960
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 758, 1035
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 5 cut(s) 66, 577, 670, 925, 983
BssMI GATC 5 cut(s) 95, 553, 832, 991, 1133
BssSI CACGAG 1 cut(s) 940
BssT1I CCWWGG 2 cut(s) 577, 925
Bst2BI CACGAG 1 cut(s) 940
Bst2UI CCWGG 3 cut(s) 6, 671, 985
Bst4CI ACNGT 3 cut(s) 425, 550, 1109
Bst6I CTCTTC 2 cut(s) 429, 1249
BstAFI CTTAAG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 530, 725, 1089
BstDEI CTNAG 7 cut(s) 146, 219, 308, 600, 753, 965, 1095
BstF5I GGATG 3 cut(s) 37, 220, 1267
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 156, 723
BstKTI GATC 5 cut(s) 98, 556, 835, 994, 1136
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 5 cut(s) 95, 553, 832, 991, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 239, 260
BstNI CCWGG 3 cut(s) 6, 671, 985
BstNSI RCATGY 4 cut(s) 358, 618, 727, 860
BstPAI GACNNNNGTC 1 cut(s) 906
BstSCI CCNGG 4 cut(s) 4, 477, 669, 983
BstSFI CTRYAG 1 cut(s) 1122
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 7 cut(s) 168, 171, 638, 789, 1071, 1234, 1236
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 965
BsuRI GGCC 1 cut(s) 490
BsuTUI ATCGAT 1 cut(s) 556
BtgZI GCGATG 2 cut(s) 223, 1080
BtsCI GGATG 3 cut(s) 37, 220, 1267
BtsIMutI CAGTG 3 cut(s) 430, 555, 1114
BtuMI TCGCGA 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 530, 725, 1089
CaiI CAGNNNCTG 2 cut(s) 676, 1130
CfoI GCGC 2 cut(s) 156, 723
Cfr13I GGNCC 1 cut(s) 980
ClaI ATCGAT 1 cut(s) 556
Csp6I GTAC 3 cut(s) 1013, 1033, 1287
CviQI GTAC 3 cut(s) 1013, 1033, 1287
DdeI CTNAG 7 cut(s) 146, 219, 308, 600, 753, 965, 1095
DpnI GATC 5 cut(s) 97, 555, 834, 993, 1135
DpnII GATC 5 cut(s) 95, 553, 832, 991, 1133
Eam1104I CTCTTC 2 cut(s) 429, 1249
EarI CTCTTC 2 cut(s) 429, 1249
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 577, 925
Eco32I GATATC 2 cut(s) 195, 875
Eco47I GGWCC 1 cut(s) 980
Eco81I CCTNAGG 1 cut(s) 965
EcoO109I RGGNCCY 1 cut(s) 980
EcoRII CCWGG 3 cut(s) 4, 669, 983
EcoRV GATATC 2 cut(s) 195, 875
EcoT14I CCWWGG 2 cut(s) 577, 925
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 577, 925
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 498, 993
FauI CCCGC 1 cut(s) 950
FauNDI CATATG 1 cut(s) 1017
FblI GTMKAC 2 cut(s) 474, 900
Fnu4HI GCNGC 7 cut(s) 157, 160, 627, 803, 1085, 1225, 1248
FokI GGATG 3 cut(s) 44, 227, 1274
Fsp4HI GCNGC 7 cut(s) 157, 160, 627, 803, 1085, 1225, 1248
FspAI RTGCGCAY 1 cut(s) 722
FspBI CTAG 5 cut(s) 42, 264, 525, 662, 1336
FspI TGCGCA 1 cut(s) 722
GlaI GCGC 2 cut(s) 155, 722
GluI GCNGC 7 cut(s) 157, 160, 627, 803, 1085, 1225, 1248
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 1 cut(s) 490
HapII CCGG 1 cut(s) 478
HhaI GCGC 2 cut(s) 156, 723
Hin6I GCGC 2 cut(s) 154, 721
HinP1I GCGC 2 cut(s) 154, 721
HincII GTYRAC 2 cut(s) 135, 911
HindII GTYRAC 2 cut(s) 135, 911
HinfI GANTC 8 cut(s) 85, 312, 644, 795, 902, 1077, 1127, 1208
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 20, 535, 697
Hpy166II GTNNAC 5 cut(s) 135, 283, 475, 901, 911
Hpy188I TCNGA 4 cut(s) 67, 768, 1060, 1138
Hpy188III TCNNGA 8 cut(s) 26, 248, 752, 830, 917, 995, 1131, 1320
Hpy8I GTNNAC 5 cut(s) 135, 283, 475, 901, 911
HpyAV CCTTC 5 cut(s) 144, 359, 403, 583, 947
HpyCH4III ACNGT 3 cut(s) 425, 550, 1109
HpyCH4IV ACGT 3 cut(s) 166, 445, 1289
HpyCH4V TGCA 8 cut(s) 188, 626, 704, 727, 763, 1214, 1224, 1311
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 260
HpyF3I CTNAG 7 cut(s) 146, 219, 308, 600, 753, 965, 1095
HpySE526I ACGT 3 cut(s) 166, 445, 1289
HspAI GCGC 2 cut(s) 154, 721
KflI GGGWCCC 1 cut(s) 980
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 5 cut(s) 95, 553, 832, 991, 1133
Lsp1109I GCAGC 7 cut(s) 168, 171, 638, 789, 1071, 1234, 1236
LweI GCATC 4 cut(s) 205, 772, 1170, 1223
MaeI CTAG 5 cut(s) 42, 264, 525, 662, 1336
MaeII ACGT 3 cut(s) 166, 445, 1289
MaeIII GTNAC 3 cut(s) 541, 1099, 1205
MalI GATC 5 cut(s) 97, 555, 834, 993, 1135
MboI GATC 5 cut(s) 95, 553, 832, 991, 1133
MboII GAAGA 4 cut(s) 239, 446, 1047, 1266
MfeI CAATTG 1 cut(s) 175
MflI RGATCY 1 cut(s) 95
MluCI AATT 8 cut(s) 175, 679, 732, 745, 999, 1176, 1270, 1276
MlyI GAGTC 5 cut(s) 79, 896, 1086, 1136, 1202
MmeI TCCRAC 1 cut(s) 870
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 3 cut(s) 102, 134, 317
MslI CAYNNNNRTG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 4 cut(s) 6, 479, 671, 985
MunI CAATTG 1 cut(s) 175
MvaI CCWGG 3 cut(s) 6, 671, 985
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 239, 260
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 1017
NdeII GATC 5 cut(s) 95, 553, 832, 991, 1133
NlaIV GGNNCC 3 cut(s) 962, 981, 982
NmuCI GTSAC 3 cut(s) 541, 1099, 1205
NruI TCGCGA 1 cut(s) 249
NsbI TGCGCA 1 cut(s) 722
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 4 cut(s) 358, 618, 727, 860
OliI CACNNNNGTG 1 cut(s) 548
PaeI GCATGC 1 cut(s) 727
PciI ACATGT 2 cut(s) 354, 856
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 312, 644, 795
PkrI GCNGC 7 cut(s) 158, 161, 628, 804, 1086, 1226, 1249
PleI GAGTC 5 cut(s) 79, 896, 1085, 1135, 1202
PpsI GAGTC 5 cut(s) 79, 896, 1085, 1135, 1202
PpuMI RGGWCCY 1 cut(s) 980
PscI ACATGT 2 cut(s) 354, 856
PshAI GACNNNNGTC 1 cut(s) 906
Psp1406I AACGTT 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 3 cut(s) 4, 669, 983
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 3 cut(s) 4, 669, 983
PspN4I GGNNCC 3 cut(s) 962, 981, 982
PspPI GGNCC 1 cut(s) 980
PspPPI RGGWCCY 1 cut(s) 980
PstNI CAGNNNCTG 2 cut(s) 676, 1130
PsuI RGATCY 1 cut(s) 95
RruI TCGCGA 1 cut(s) 249
RsaI GTAC 3 cut(s) 1014, 1034, 1288
RsaNI GTAC 3 cut(s) 1013, 1033, 1287
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 3 cut(s) 102, 134, 317
SatI GCNGC 7 cut(s) 157, 160, 627, 803, 1085, 1225, 1248
Sau3AI GATC 5 cut(s) 95, 553, 832, 991, 1133
Sau96I GGNCC 1 cut(s) 980
SchI GAGTC 5 cut(s) 79, 896, 1086, 1136, 1202
ScrFI CCNGG 4 cut(s) 6, 479, 671, 985
SfaNI GCATC 4 cut(s) 205, 772, 1170, 1223
SfcI CTRYAG 1 cut(s) 1122
SinI GGWCC 1 cut(s) 980
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 3 cut(s) 101, 904, 1036
SmoI CTYRAG 3 cut(s) 101, 904, 1036
SphI GCATGC 1 cut(s) 727
Sse9I AATT 8 cut(s) 175, 679, 732, 745, 999, 1176, 1270, 1276
SsiI CCGC 2 cut(s) 79, 957
SspMI CTAG 5 cut(s) 42, 264, 525, 662, 1336
StyD4I CCNGG 4 cut(s) 4, 477, 669, 983
StyI CCWWGG 2 cut(s) 577, 925
TaaI ACNGT 3 cut(s) 425, 550, 1109
TaiI ACGT 3 cut(s) 169, 448, 1292
TaqI TCGA 3 cut(s) 181, 556, 877
TasI AATT 8 cut(s) 175, 679, 732, 745, 999, 1176, 1270, 1276
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 312, 644, 795
Tru1I TTAA 3 cut(s) 102, 134, 317
Tru9I TTAA 3 cut(s) 102, 134, 317
TscAI CASTG 3 cut(s) 430, 555, 1114
TseFI GTSAC 3 cut(s) 541, 1099, 1205
TseI GCWGC 7 cut(s) 156, 159, 626, 802, 1084, 1224, 1247
Tsp45I GTSAC 3 cut(s) 541, 1099, 1205
TspDTI ATGAA 4 cut(s) 9, 551, 966, 1019
TspRI CASTG 3 cut(s) 430, 555, 1114
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 980
XapI RAATTY 1 cut(s) 1276
XceI RCATGY 4 cut(s) 358, 618, 727, 860
XmiI GTMKAC 2 cut(s) 474, 900
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 5 cut(s) 42, 264, 525, 662, 1336
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.