pycom10g15750

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
18930622 .. 18934726
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15750.1

Sequence Viewer

Length: 1125 bp
ATGGCTTCCGGAAGCAACGGCGGATTTCTGGTGCTGGTTTTGGCGGTTTCGATCTGCCATGCTGCTGCTTCTGTCTTCCACCCGATTTCCGACTCTCACCGGTCCGCGGCTGCGGAGCTATTTGCGCCCGTCGATGGATCGTTCGGGAGTTTAGAAGAGGCATATGAAGCCTTAAGATCGTTCGAGGTTCTTGGGATTAATAAGAAGTCCGATATACGGACCACTACTTGTCAGTCTGTTGTTGAAAAACTCAGGTCATCGTCGTCTGCCCCAAAGTATTTGTTCTATGCCTTAAAGGTTAACGGCATTTTGGAATGCACGGTTATAAATGAAGTATTTGAGGGCATTGCTTCAAGACTTCAAACTAATGTCAATGGTGCAAGTTCATTGCTCGAGTTCTACTACTCAATTGGAAGCTTGGTACTTATTAAGGATCAAAGTCCTGAAGTCGATGTACTTCTTGCTGATGCTGGTGGAGTTTTCCATTCTATCAAGTCTCTCAGCCAGAGTGATGGAAGGTGGCGCTTCAGTTCGGATAATCCTGAGGCTAGTACCTATGCTGCTGGATTAGCTCTTGAAGCACTTTCTGGAGTTATCGCATTAGCATCTTCCGAAGTTGATCAGTCTAAGATTGGTACATTGAAAAGTGATATTTTGAAGCTTTTTGACAGTATTGAGAAATATGGTATGATGGGACCATTTACTTTGATGAAAAAGTTGATCGATCTGCGTGAGCATCAGAGTCCTCTTTCAACTACTGCATCAGTTATTCGAGGATTAACAGCATTTGCAACTGTGACATCTGGAGACATAAAGATTCCAGGGGACAAGATATTGGGTCTAGCAAAATTTTTCCTTGGAATTGGCATTCCTGGCAATTCTAAAGACTTTTTCAACCAAATAGATTCATTAGCGTCTTTGGAAAGCAATAAGGTCTCTATTCCTTTGGTATTATCACTTCCAGCTACAGTGCTTTCATTGACCAAGAAAGACCAGCTCCAGGTGAAAGTGAATACCGTGCTTGGTTCAAGTGCACCACCTCTGACAGTTAAGTTGGTGAAAGCATTCAGTCCTGGTTCAAAAGCTGCGTCTAAAATTGCAAGCCAGGTGGGAACTCAAGTTTGA

Protein Analysis

375

Amino Acids

39.52

Weight (kDa)

6.97

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribophorin_II PF05817 29 - 308 3e-53 Ribophorin II N-terminal domain
Ribophorin_II_2nd PF23861 316 - 361 1.6e-08 Ribophorin II second domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019323)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AccII CGCG 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 5 cut(s) 21, 44, 105, 107, 113
AclWI GGATC 2 cut(s) 145, 441
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 2 cut(s) 465, 511
AfaI GTAC 4 cut(s) 423, 456, 553, 637
AfiI CCNNNNNNNGG 4 cut(s) 106, 134, 216, 1000
AflII CTTAAG 1 cut(s) 172
AgeI ACCGGT 1 cut(s) 99
AjnI CCWGG 5 cut(s) 820, 871, 999, 1072, 1104
AluBI AGCT 7 cut(s) 118, 417, 572, 661, 965, 997, 1085
AluI AGCT 7 cut(s) 118, 417, 572, 661, 965, 997, 1085
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 3 cut(s) 501, 801, 940
Alw44I GTGCAC 1 cut(s) 1032
AlwI GGATC 2 cut(s) 145, 441
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 1032
ApeKI GCWGC 5 cut(s) 62, 65, 110, 560, 1085
ApoI RAATTY 1 cut(s) 848
ArsI GACNNNNNNTTYG 2 cut(s) 1073, 1105
AseI ATTAAT 1 cut(s) 198
AsiGI ACCGGT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 1064
AspLEI GCGC 2 cut(s) 127, 525
AspS9I GGNCC 3 cut(s) 102, 219, 695
AsuHPI GGTGA 3 cut(s) 89, 1015, 1069
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 3 cut(s) 102, 219, 695
AxyI CCTNAGG 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 1036
BarI GAAGNNNNNNTAC 4 cut(s) 438, 470, 942, 974
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 5 cut(s) 49, 52, 97, 547, 1072
BccI CCATC 3 cut(s) 128, 506, 685
BceAI ACGGC 2 cut(s) 34, 319
BciT130I CCWGG 5 cut(s) 822, 873, 1001, 1074, 1106
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 3 cut(s) 501, 801, 940
BfaI CTAG 2 cut(s) 549, 842
BfmI CTRYAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 526
BfrI CTTAAG 1 cut(s) 172
BisI GCNGC 6 cut(s) 63, 66, 108, 111, 561, 1086
BlsI GCNGC 6 cut(s) 64, 67, 109, 112, 562, 1087
Bme1390I CCNGG 5 cut(s) 822, 873, 1001, 1074, 1106
Bme18I GGWCC 3 cut(s) 102, 219, 695
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 102, 219, 695
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 5 cut(s) 822, 873, 1001, 1074, 1106
BmsI GCATC 4 cut(s) 457, 614, 745, 770
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 3 cut(s) 609, 825, 983
BpuEI CTTGAG 1 cut(s) 1101
Bsa29I ATCGAT 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 940
BsaJI CCNNGG 3 cut(s) 105, 821, 856
BsaWI WCCGGW 2 cut(s) 8, 99
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 134, 216, 1000
Bse118I RCCGGY 1 cut(s) 99
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 2 cut(s) 345, 386
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 5 cut(s) 822, 873, 1001, 1074, 1106
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 3 cut(s) 105, 821, 856
BseLI CCNNNNNNNGG 4 cut(s) 106, 134, 216, 1000
BseMI GCAATG 2 cut(s) 345, 386
BseMII CTCAG 3 cut(s) 265, 514, 534
BseSI GKGCMC 1 cut(s) 1036
BseXI GCAGC 5 cut(s) 49, 52, 97, 547, 1072
Bsh1236I CGCG 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 1036
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 9, 100
BslFI GGGAC 2 cut(s) 708, 839
BslI CCNNNNNNNGG 4 cut(s) 106, 134, 216, 1000
BsmAI GTCTC 3 cut(s) 501, 801, 940
BsmFI GGGAC 2 cut(s) 708, 839
BsmI GAATGC 3 cut(s) 320, 867, 1064
Bso31I GGTCTC 1 cut(s) 940
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
BspACI CCGC 5 cut(s) 21, 44, 105, 107, 113
BspCNI CTCAG 3 cut(s) 264, 513, 535
BspDI ATCGAT 1 cut(s) 723
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 696
BspPI GGATC 2 cut(s) 145, 441
BspTI CTTAAG 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 940
BsrDI GCAATG 2 cut(s) 345, 386
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 105, 821, 856
BssMI GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
BssT1I CCWWGG 1 cut(s) 856
Bst2UI CCWGG 5 cut(s) 822, 873, 1001, 1074, 1106
Bst4CI ACNGT 6 cut(s) 322, 671, 796, 970, 1018, 1048
Bst6I CTCTTC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 1102
BstDEI CTNAG 4 cut(s) 251, 500, 543, 627
BstDSI CCRYGG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 2 cut(s) 127, 525
BstKTI GATC 7 cut(s) 54, 140, 179, 436, 622, 723, 727
BstMAI GTCTC 3 cut(s) 501, 801, 940
BstMBI GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
BstMWI GCNNNNNNNGC 5 cut(s) 124, 167, 569, 578, 873
BstNI CCWGG 5 cut(s) 822, 873, 1001, 1074, 1106
BstSCI CCNGG 5 cut(s) 820, 871, 999, 1072, 1104
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 1 cut(s) 1036
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 5 cut(s) 49, 52, 97, 547, 1072
BstV2I GAAGAC 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 723
Bsu36I CCTNAGG 1 cut(s) 543
BsuTUI ATCGAT 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 1102
CfoI GCGC 2 cut(s) 127, 525
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 102, 219, 695
Cfr42I CCGCGG 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 723
CpoI CGGWCCG 1 cut(s) 102
CseI GACGC 2 cut(s) 903, 1077
Csp6I GTAC 4 cut(s) 422, 455, 552, 636
CspAI ACCGGT 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 1089, 1124
CspI CGGWCCG 1 cut(s) 102
CviAII CATG 1 cut(s) 59
CviQI GTAC 4 cut(s) 422, 455, 552, 636
DdeI CTNAG 4 cut(s) 251, 500, 543, 627
DpnI GATC 7 cut(s) 53, 139, 178, 435, 621, 722, 726
DpnII GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 856
Eco31I GGTCTC 1 cut(s) 940
Eco47I GGWCC 3 cut(s) 102, 219, 695
Eco57I CTGAAG 2 cut(s) 465, 511
Eco81I CCTNAGG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 392
EcoRII CCWGG 5 cut(s) 820, 871, 999, 1072, 1104
EcoT14I CCWWGG 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 1 cut(s) 62
FaqI GGGAC 2 cut(s) 708, 839
FatI CATG 1 cut(s) 58
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 6 cut(s) 63, 66, 108, 111, 561, 1086
Fsp4HI GCNGC 6 cut(s) 63, 66, 108, 111, 561, 1086
FspBI CTAG 2 cut(s) 549, 842
GlaI GCGC 2 cut(s) 126, 524
GluI GCNGC 6 cut(s) 63, 66, 108, 111, 561, 1086
GsuI CTGGAG 3 cut(s) 609, 825, 983
HaeII RGCGCY 1 cut(s) 526
HapII CCGG 2 cut(s) 9, 100
HgaI GACGC 2 cut(s) 903, 1077
HhaI GCGC 2 cut(s) 127, 525
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 2 cut(s) 125, 523
HinP1I GCGC 2 cut(s) 125, 523
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 2 cut(s) 415, 659
HinfI GANTC 4 cut(s) 92, 742, 817, 905
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 2 cut(s) 9, 100
HphI GGTGA 3 cut(s) 89, 1015, 1069
Hpy166II GTNNAC 2 cut(s) 301, 1034
Hpy188I TCNGA 6 cut(s) 91, 211, 535, 613, 741, 1044
Hpy188III TCNNGA 8 cut(s) 9, 145, 354, 443, 542, 575, 588, 804
Hpy8I GTNNAC 2 cut(s) 301, 1034
Hpy99I CGWCG 2 cut(s) 134, 265
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 6 cut(s) 322, 671, 796, 970, 1018, 1048
HpyCH4V TGCA 6 cut(s) 318, 380, 761, 791, 1034, 1100
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 167, 569, 578, 873
HpyF3I CTNAG 4 cut(s) 251, 500, 543, 627
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 2 cut(s) 125, 523
Kpn2I TCCGGA 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 301
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
LmnI GCTCC 2 cut(s) 115, 1002
Lsp1109I GCAGC 5 cut(s) 49, 52, 97, 547, 1072
LweI GCATC 4 cut(s) 457, 614, 745, 770
MaeI CTAG 2 cut(s) 549, 842
MaeIII GTNAC 1 cut(s) 796
MalI GATC 7 cut(s) 53, 139, 178, 435, 621, 722, 726
MboI GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
MboII GAAGA 3 cut(s) 67, 167, 600
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 1036
MluCI AATT 5 cut(s) 408, 848, 861, 877, 1095
MlyI GAGTC 2 cut(s) 86, 751
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 7 cut(s) 151, 178, 334, 538, 756, 767, 1050
MroI TCCGGA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 1064
MseI TTAA 7 cut(s) 173, 198, 293, 300, 429, 779, 1050
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 172
MspI CCGG 2 cut(s) 9, 100
MspR9I CCNGG 5 cut(s) 822, 873, 1001, 1074, 1106
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 3 cut(s) 320, 867, 1064
MvaI CCWGG 5 cut(s) 822, 873, 1001, 1074, 1106
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 124, 167, 569, 578, 873
NdeI CATATG 1 cut(s) 163
NdeII GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 1 cut(s) 796
PaeR7I CTCGAG 1 cut(s) 392
PctI GAATGC 3 cut(s) 320, 867, 1064
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 2 cut(s) 817, 905
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 6 cut(s) 64, 67, 109, 112, 562, 1087
PleI GAGTC 2 cut(s) 86, 750
PpsI GAGTC 2 cut(s) 86, 750
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 326
Psp6I CCWGG 5 cut(s) 820, 871, 999, 1072, 1104
PspGI CCWGG 5 cut(s) 820, 871, 999, 1072, 1104
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 3 cut(s) 102, 219, 695
PspXI VCTCGAGB 1 cut(s) 392
RsaI GTAC 4 cut(s) 423, 456, 553, 637
RsaNI GTAC 4 cut(s) 422, 455, 552, 636
Rsr2I CGGWCCG 1 cut(s) 102
RsrII CGGWCCG 1 cut(s) 102
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 7 cut(s) 173, 198, 293, 300, 429, 779, 1050
SatI GCNGC 6 cut(s) 63, 66, 108, 111, 561, 1086
Sau3AI GATC 7 cut(s) 51, 137, 176, 433, 619, 720, 724
Sau96I GGNCC 3 cut(s) 102, 219, 695
SchI GAGTC 2 cut(s) 86, 751
ScrFI CCNGG 5 cut(s) 822, 873, 1001, 1074, 1106
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 4 cut(s) 457, 614, 745, 770
SfcI CTRYAG 1 cut(s) 966
Sfr274I CTCGAG 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SinI GGWCC 3 cut(s) 102, 219, 695
SlaI CTCGAG 1 cut(s) 392
SmlI CTYRAG 3 cut(s) 172, 392, 1116
SmoI CTYRAG 3 cut(s) 172, 392, 1116
Sse9I AATT 5 cut(s) 408, 848, 861, 877, 1095
SsiI CCGC 5 cut(s) 21, 44, 105, 107, 113
SspMI CTAG 2 cut(s) 549, 842
StyD4I CCNGG 5 cut(s) 820, 871, 999, 1072, 1104
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 6 cut(s) 322, 671, 796, 970, 1018, 1048
TaqI TCGA 7 cut(s) 50, 132, 183, 393, 450, 723, 772
TasI AATT 5 cut(s) 408, 848, 861, 877, 1095
TatI WGTACW 1 cut(s) 454
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 817, 905
Tru1I TTAA 7 cut(s) 173, 198, 293, 300, 429, 779, 1050
Tru9I TTAA 7 cut(s) 173, 198, 293, 300, 429, 779, 1050
TscAI CASTG 1 cut(s) 975
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 5 cut(s) 62, 65, 110, 560, 1085
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 6 cut(s) 180, 345, 375, 725, 897, 966
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 975
Vha464I CTTAAG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 3 cut(s) 102, 219, 695
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 848
XhoI CTCGAG 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 1064
XspI CTAG 2 cut(s) 549, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.