Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8246195.1

Orthogroup ID

OG0019323

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 693

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8246195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ctgaccaaactctccctctctttgagaatggctacccgaaccctcggggcacttgtggtgctccttttggcgatcgtgatatgtgaagcggcctccgtcttccacccgatctccgactctcaccgatccgccgcttctgagctcttcacccagggatccttcgacagtttagaagaggcgtatgaagccctgagatcgtttgaggttctcgggattgataagcctgatatacgtggcgctacttgtaagtctgttgtggaaaagcttggatcatcggaatctgctccaaaagacttgttctatgccttaaaggttaacagcattttgaagtgtgaggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

113

Amino Acids

12.19

Weight (kDa)

5.65

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019323)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15750
rosa_multiflora	Rmu_co8246195.1_g000001
rosa_rugosa	Rorug07G0071200.1
rosa_samantha	Rh1CG187700 Rh6BG290700 Rh6CG301700 Rh6CG315700 Rh6DG300200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	89, 129, 132
AclWI	GGATC	4 cut(s)	120, 150, 163, 277
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	142, 265
AluI	AGCT	2 cut(s)	142, 265
Alw21I	GWGCWC	2 cut(s)	63, 144
AlwI	GGATC	4 cut(s)	120, 150, 163, 277
Ama87I	CYCGRG	2 cut(s)	44, 209
AoxI	GGCC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	113, 139
AvaI	CYCGRG	2 cut(s)	44, 209
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	63, 144
BciT130I	CCWGG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	2 cut(s)	90, 132
BlsI	GCNGC	2 cut(s)	91, 133
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	2 cut(s)	44, 209
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	43, 150, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	43, 150, 151
BseMII	CTCAG	2 cut(s)	129, 182
BseSI	GKGCMC	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	63, 144
BsiHKCI	CYCGRG	2 cut(s)	44, 209
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	2 cut(s)	44, 209
Bsp1286I	GDGCHC	3 cut(s)	52, 63, 144
Bsp143I	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
BspACI	CCGC	3 cut(s)	89, 129, 132
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	130, 183
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	4 cut(s)	120, 150, 163, 277
BspQI	GCTCTTC	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	43, 150, 151
BssMI	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	149, 168
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	138, 191
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	6 cut(s)	75, 111, 128, 158, 197, 272
BstMBI	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	239
CviJI	RGCY	6 cut(s)	32, 92, 142, 188, 223, 265
CviKI_1	RGCY	6 cut(s)	32, 92, 142, 188, 223, 265
DdeI	CTNAG	2 cut(s)	138, 191
DpnI	GATC	6 cut(s)	74, 110, 127, 157, 196, 271
DpnII	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
Eam1104I	CTCTTC	2 cut(s)	149, 168
EarI	CTCTTC	2 cut(s)	149, 168
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	2 cut(s)	44, 209
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	144
FaiI	YATR	4 cut(s)	82, 183, 230, 303
Fnu4HI	GCNGC	2 cut(s)	90, 132
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	90, 132
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	90, 132
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	116, 278
HpaI	GTTAAC	1 cut(s)	316
HphI	GGTGA	2 cut(s)	113, 139
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	115, 139, 277
Hpy188III	TCNNGA	2 cut(s)	76, 211
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	138, 191
HpySE526I	ACGT	1 cut(s)	232
HspAI	GCGC	1 cut(s)	237
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	66, 289
LpnPI	CCDG	4 cut(s)	137, 164, 203, 237
MaeII	ACGT	1 cut(s)	232
MalI	GATC	6 cut(s)	74, 110, 127, 157, 196, 271
MboI	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
MboII	GAAGA	3 cut(s)	91, 136, 185
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	3 cut(s)	52, 63, 144
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	26, 53, 103, 169, 196, 328
MseI	TTAA	2 cut(s)	308, 315
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
NlaIV	GGNNCC	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	91, 133
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	155
PvuI	CGATCG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	308, 315
SatI	GCNGC	2 cut(s)	90, 132
Sau3AI	GATC	6 cut(s)	72, 108, 125, 155, 194, 269
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	3 cut(s)	52, 63, 144
SetI	ASST	6 cut(s)	144, 207, 235, 267, 315, 339
SsiI	CCGC	3 cut(s)	89, 129, 132
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	162
TauI	GCSGC	2 cut(s)	92, 134
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	308, 315
Tru9I	TTAA	2 cut(s)	308, 315
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.