Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0019323

Physical Location & Seq

Genomic Coordinates Reverse (-)

40956186 .. 40957220

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 376 bp

ATGTCCGCCAACACCAAGCCCTCTCTCTCTCTTCACTTCCTTTTTAGCGTTCAATTCATCGATTTAACCCAAACTCGATCTGAGAGAGGCCTTCTCCTTCACAAAGCCGATCTGTACCGAGCCCAGGCGCTCCTCCTCCGGCCGCTTCCGCCATCTCCGCCATCTCCAAGACCTCTCTCTCTGACTGGAGTCTTCCACCCGATCTCCGACTCTCACCGATCCGCCGCTTCTGAGCTCTTCACCCAGGGATCCTTCGACAGTTTAGAAGAGGAGTATGAAGCCCTGAGATCATTTGAGGTTCTCGGGATTGATAAGCCTGATATACGTGCCGCTACTTATTATGCTGTGGCTGGACTTGGAGTCATCGACATGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

5.73

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019323)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15750
rosa_multiflora	Rmu_co8246195.1_g000001
rosa_rugosa	Rorug07G0071200.1
rosa_samantha	Rh1CG187700 Rh6BG290700 Rh6CG301700 Rh6CG315700 Rh6DG300200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	6, 143, 149, 158, 222, 225, 330
AclWI	GGATC	3 cut(s)	213, 243, 256
AcoI	YGGCCR	1 cut(s)	140
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	53
AhdI	GACNNNNNGTC	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	123, 243
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	213, 243, 256
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	88, 140
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	206, 232
AvaI	CYCGRG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	248
BanII	GRGCYC	2 cut(s)	124, 237
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	2 cut(s)	160, 169
BciT130I	CCWGG	2 cut(s)	125, 245
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	3 cut(s)	143, 225, 330
BlsI	GCNGC	3 cut(s)	144, 226, 331
Bme1390I	CCNGG	2 cut(s)	125, 245
BmeRI	GACNNNNNGTC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	125, 245
BoxI	GACNNNNGTC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpmI	CTGGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	123, 243, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	125, 245
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	123, 243, 244
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	3 cut(s)	72, 222, 275
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	122, 125, 284
BseX3I	CGGCCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	90, 142
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	2 cut(s)	90, 142
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	124, 237
Bsp143I	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
BspACI	CCGC	7 cut(s)	6, 143, 149, 158, 222, 225, 330
BspANI	GGCC	2 cut(s)	90, 142
BspCNI	CTCAG	3 cut(s)	73, 223, 276
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	3 cut(s)	213, 243, 256
BspQI	GCTCTTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	123, 243, 244
BssMI	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
Bst2UI	CCWGG	2 cut(s)	125, 245
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	3 cut(s)	36, 242, 261
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	81, 231, 284
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	6 cut(s)	80, 112, 204, 221, 251, 290
BstMBI	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 157
BstNI	CCWGG	2 cut(s)	125, 245
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	123, 243
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BstZI	CGGCCG	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	90, 142
BsuTUI	ATCGAT	1 cut(s)	60
CfoI	GCGC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	9 cut(s)	19, 90, 107, 122, 142, 235, 281, 316, 350
CviKI_1	RGCY	9 cut(s)	19, 90, 107, 122, 142, 235, 281, 316, 350
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	81, 231, 284
DpnI	GATC	6 cut(s)	79, 111, 203, 220, 250, 289
DpnII	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
DriI	GACNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
Eam1104I	CTCTTC	3 cut(s)	36, 242, 261
Eam1105I	GACNNNNNGTC	1 cut(s)	359
EarI	CTCTTC	3 cut(s)	36, 242, 261
EciI	GGCGGA	3 cut(s)	138, 147, 211
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	124, 237
Eco52I	CGGCCG	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	123, 243
EcoT38I	GRGCYC	2 cut(s)	124, 237
FaeI	CATG	1 cut(s)	373
FaiI	YATR	4 cut(s)	276, 323, 342, 371
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	143, 225, 330
FriOI	GRGCYC	2 cut(s)	124, 237
Fsp4HI	GCNGC	3 cut(s)	143, 225, 330
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	143, 225, 330
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	90, 142
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	189, 209, 360
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	206, 232
Hpy188I	TCNGA	4 cut(s)	82, 183, 208, 232
Hpy188III	TCNNGA	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	101, 107, 262
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 157
HpyF3I	CTNAG	3 cut(s)	81, 231, 284
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	110, 137, 152, 171, 230, 257, 296, 330, 336
MaeII	ACGT	1 cut(s)	325
MalI	GATC	6 cut(s)	79, 111, 203, 220, 250, 289
MboI	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
MboII	GAAGA	4 cut(s)	23, 184, 229, 278
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	124, 237
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	3 cut(s)	198, 203, 369
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	31, 80, 143, 146, 183, 262, 289
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	125, 245
MvaI	CCWGG	2 cut(s)	125, 245
MwoI	GCNNNNNNNGC	2 cut(s)	148, 157
NdeII	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	250
PasI	CCCWGGG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	144, 226, 331
PleI	GAGTC	3 cut(s)	197, 203, 368
PpsI	GAGTC	3 cut(s)	197, 203, 368
Ppu21I	YACGTR	1 cut(s)	326
PshAI	GACNNNNGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	123, 243
PspGI	CCWGG	2 cut(s)	123, 243
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	143, 225, 330
Sau3AI	GATC	6 cut(s)	77, 109, 201, 218, 248, 287
SchI	GAGTC	3 cut(s)	198, 203, 369
ScrFI	CCNGG	2 cut(s)	125, 245
SduI	GDGCHC	2 cut(s)	124, 237
SetI	ASST	4 cut(s)	175, 237, 300, 328
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	53
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	7 cut(s)	6, 143, 149, 158, 222, 225, 330
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	123, 243
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	60, 76, 255, 366
TasI	AATT	1 cut(s)	53
TauI	GCSGC	3 cut(s)	145, 227, 332
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	46, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.