Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019323

Physical Location & Seq

Genomic Coordinates Reverse (-)

51559577 .. 51563254

Gene Structure 3678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTCCAAAGGAACAACATCTGTAAAGAAGTTGATGAAAATCAGAAGGAATATTTTCAAAGGACTGGAGTCTTCCACCCGATCTCGGACTCTCACCGATCCGCTGCTTCTGAGCTCTTCACCCAGGGATCCTTCGACAGTTTAGAAGAGGCGTATGAAGCCCTGAGATCATTTGAGGTTCTCGGGATTGATAAACCTGATATACGTGCCGCTACTTGTAAGTCTGTTGTGGAACTTTGTTTTACTAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

84

Amino Acids

9.58

Weight (kDa)

5.06

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	28 - 79	7.9e-08	Ribophorin II N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019323)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15750
rosa_multiflora	Rmu_co8246195.1_g000001
rosa_rugosa	Rorug07G0071200.1
rosa_samantha	Rh1CG187700 Rh6BG290700 Rh6CG301700 Rh6CG315700 Rh6DG300200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 210
AclWI	GGATC	3 cut(s)	93, 123, 136
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	93, 123, 136
Ama87I	CYCGRG	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	86, 112
AvaI	CYCGRG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	105, 210
BlsI	GCNGC	2 cut(s)	106, 211
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	125
BoxI	GACNNNNGTC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	123, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 124
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	102, 155
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	81, 98, 128, 167
BspACI	CCGC	2 cut(s)	102, 210
BspCNI	CTCAG	2 cut(s)	103, 156
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	3 cut(s)	93, 123, 136
BspQI	GCTCTTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	123, 124
BssMI	GATC	4 cut(s)	81, 98, 128, 167
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	122, 141
BstBAI	YACGTR	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	111, 164
BstKTI	GATC	4 cut(s)	84, 101, 131, 170
BstMBI	GATC	4 cut(s)	81, 98, 128, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
CviJI	RGCY	2 cut(s)	115, 161
CviKI_1	RGCY	2 cut(s)	115, 161
DdeI	CTNAG	2 cut(s)	111, 164
DpnI	GATC	4 cut(s)	83, 100, 130, 169
DpnII	GATC	4 cut(s)	81, 98, 128, 167
Eam1104I	CTCTTC	2 cut(s)	122, 141
EarI	CTCTTC	2 cut(s)	122, 141
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	117
FaiI	YATR	3 cut(s)	156, 203, 253
Fnu4HI	GCNGC	2 cut(s)	105, 210
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	105, 210
GluI	GCNGC	2 cut(s)	105, 210
GsuI	CTGGAG	1 cut(s)	87
HinfI	GANTC	2 cut(s)	69, 89
HphI	GGTGA	2 cut(s)	86, 112
Hpy188I	TCNGA	3 cut(s)	45, 88, 112
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	40, 142
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	111, 164
HpySE526I	ACGT	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	81, 98, 128, 167
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	51, 110, 137, 176, 210
Lsp1109I	GCAGC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	205
MalI	GATC	4 cut(s)	83, 100, 130, 169
MboI	GATC	4 cut(s)	81, 98, 128, 167
MboII	GAAGA	3 cut(s)	64, 109, 158
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	78, 83
MnlI	CCTC	2 cut(s)	142, 169
MroXI	GAANNNNTTC	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	4 cut(s)	81, 98, 128, 167
NlaIV	GGNNCC	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	106, 211
PleI	GAGTC	2 cut(s)	77, 83
PpsI	GAGTC	2 cut(s)	77, 83
Ppu21I	YACGTR	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	105, 210
Sau3AI	GATC	4 cut(s)	81, 98, 128, 167
SchI	GAGTC	2 cut(s)	78, 83
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	117, 180, 199, 208
SsiI	CCGC	2 cut(s)	102, 210
SspI	AATATT	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	135
TauI	GCSGC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	51, 171
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.