pycom10g17550

Nucleolar complex protein 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010460
Physical Location & Seq
Reverse (-)
20793446 .. 20795019
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGTTGATCGTTCAGGACTTCTTTGTCCAGCTTTACAATATTATACTTGAATATAGGCCTGGAAGAGATCAGGGCGAAGTATTAGCTGAAGCTTTGAAGATGATGCTGTGTGATGATAGACAACATGACATGCAGAAGGCTGCTGCATTTGTAAAGCGTTTGGCTACATTCTCATTATCTTTGGTTACTTTAAAACATCTTCTTCTGAAGAACGTCAAGTGCCGGAATCTGTTAGAAAATGATGCTGGAGGTGGCTCAGTGTCCGGTTCCGTCGCAAAATATCACCCAGATGCTTCAGACCCCAACTTAAGTGGCGCTCTTGCTTCAGTTCTTTGGGAACTCAATCTTCTCGCCCAGCATTATCATCCAGCTATCTCCAATATGGCTTCCAGTATATCAACCATGAACACTGCTCATAACCAGGTTTATCTCTCTACCATTTCTCCTCAACAAGCTTTCATGGATTATTCCTTGGAGAGGCAGGAGTCTTTCAACCCACCAAATGACATCAAAAAATCAACTAACAAGAGAAAAAGAGGAAGTGGGTCTTCATTATTAGCTGGGATAGAACCGTCTGCAGATACAAGTCCAATTGATGAAGATGATGTGAGACAGAAACTGTCTGCTCATTTTACGCTTCTTCGTGACATTAAGGAGAATCAGAGTTTGAGGGCTAAGCTAGATAGTACCACATCATCCATACAGTTATATGAAGAGTATAAGCAGCAGAAGAAGGCTAAAAAGCCGAAAACCAAGATAAGGAAAACTTCGTTAACTGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF NOC3p

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

9.25

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBF PF03914 5 - 129 6.2e-19 CBF/Mak21 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AcuI CTGAAG 4 cut(s) 108, 227, 279, 309
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 477, 759
AflII CTTAAG 1 cut(s) 307
AgsI TTSAA 3 cut(s) 50, 97, 493
AjnI CCWGG 2 cut(s) 58, 420
AluBI AGCT 7 cut(s) 31, 86, 92, 371, 455, 560, 679
AluI AGCT 7 cut(s) 31, 86, 92, 371, 455, 560, 679
Alw26I GTCTC 1 cut(s) 604
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 140, 143, 724
AspLEI GCGC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 3 cut(s) 127, 130, 736
BciT130I CCWGG 2 cut(s) 60, 422
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 141, 144, 725
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 3 cut(s) 142, 145, 726
Bme1390I CCNGG 2 cut(s) 60, 422
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 60, 422
BmsI GCATC 3 cut(s) 93, 232, 280
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 675
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 759
Bse1I ACTGG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 60, 422
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 364, 695
BseLI CCNNNNNNNGG 2 cut(s) 477, 759
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 3 cut(s) 127, 130, 736
BseYI CCCAGC 2 cut(s) 354, 560
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 223, 264
BslI CCNNNNNNNGG 2 cut(s) 477, 759
BsmAI GTCTC 1 cut(s) 604
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 6, 67
Bsp1720I GCTNAGC 1 cut(s) 675
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 580
BspTI CTTAAG 1 cut(s) 307
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 6, 67
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 2 cut(s) 60, 422
Bst4CI ACNGT 4 cut(s) 573, 621, 705, 778
Bst6I CTCTTC 2 cut(s) 58, 708
BstAFI CTTAAG 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 256, 675
BstENI CCTNNNNNAGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 364, 695
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 2 cut(s) 9, 70
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 2 cut(s) 6, 67
BstNI CCWGG 2 cut(s) 60, 422
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 58, 420
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 127, 130, 736
BstV2I GAAGAC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 364, 695
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 264, 408
CaiI CAGNNNCTG 1 cut(s) 619
CfoI GCGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 420
Csp6I GTAC 1 cut(s) 687
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 4 cut(s) 125, 130, 403, 460
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 2 cut(s) 256, 675
DpnI GATC 2 cut(s) 8, 69
DpnII GATC 2 cut(s) 6, 67
DraI TTTAAA 1 cut(s) 192
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 58, 708
EarI CTCTTC 2 cut(s) 58, 708
Eco130I CCWWGG 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 58
Eco57I CTGAAG 4 cut(s) 108, 227, 279, 309
EcoNI CCTNNNNNAGG 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 58, 420
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 4 cut(s) 128, 133, 406, 463
FalI AAGNNNNNCTT 4 cut(s) 532, 564, 751, 783
FatI CATG 4 cut(s) 124, 129, 402, 459
Fnu4HI GCNGC 3 cut(s) 141, 144, 725
FokI GGATG 2 cut(s) 351, 682
Fsp4HI GCNGC 3 cut(s) 141, 144, 725
FspBI CTAG 1 cut(s) 680
GlaI GCGC 1 cut(s) 316
GluI GCNGC 3 cut(s) 141, 144, 725
GsaI CCCAGC 2 cut(s) 358, 564
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 223, 264
HhaI GCGC 1 cut(s) 317
Hin1II CATG 4 cut(s) 128, 133, 406, 463
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HindIII AAGCTT 2 cut(s) 90, 453
HinfI GANTC 3 cut(s) 226, 485, 658
HpaI GTTAAC 1 cut(s) 774
HpaII CCGG 2 cut(s) 223, 264
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 774
Hpy188I TCNGA 3 cut(s) 207, 298, 663
Hpy188III TCNNGA 2 cut(s) 14, 644
Hpy8I GTNNAC 1 cut(s) 774
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 130, 727
HpyCH4III ACNGT 4 cut(s) 573, 621, 705, 778
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 133, 146, 578
HpyF3I CTNAG 2 cut(s) 256, 675
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 4 cut(s) 128, 133, 406, 463
HspAI GCGC 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 774
Kzo9I GATC 2 cut(s) 6, 67
Lsp1109I GCAGC 3 cut(s) 127, 130, 736
LweI GCATC 3 cut(s) 93, 232, 280
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 1 cut(s) 680
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 184, 644
MalI GATC 2 cut(s) 8, 69
MboI GATC 2 cut(s) 6, 67
MfeI CAATTG 1 cut(s) 591
MluCI AATT 1 cut(s) 591
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 5 cut(s) 242, 456, 471, 530, 663
MseI TTAA 4 cut(s) 191, 308, 651, 773
MslI CAYNNNNRTG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 307
MspI CCGG 2 cut(s) 223, 264
MspR9I CCNGG 2 cut(s) 60, 422
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 2 cut(s) 60, 422
NdeII GATC 2 cut(s) 6, 67
NlaIII CATG 4 cut(s) 128, 133, 406, 463
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 1 cut(s) 133
PceI AGGCCT 1 cut(s) 58
PfeI GAWTC 2 cut(s) 226, 658
PkrI GCNGC 3 cut(s) 142, 145, 726
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 58, 420
PspFI CCCAGC 2 cut(s) 354, 560
PspGI CCWGG 2 cut(s) 58, 420
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 619
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 4 cut(s) 191, 308, 651, 773
SatI GCNGC 3 cut(s) 141, 144, 725
Sau3AI GATC 2 cut(s) 6, 67
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 60, 422
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 3 cut(s) 93, 232, 280
SfcI CTRYAG 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 1 cut(s) 591
SseBI AGGCCT 1 cut(s) 58
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 680
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 58, 420
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 4 cut(s) 573, 621, 705, 778
TaiI ACGT 1 cut(s) 216
TasI AATT 1 cut(s) 591
TfiI GAWTC 2 cut(s) 226, 658
Tru1I TTAA 4 cut(s) 191, 308, 651, 773
Tru9I TTAA 4 cut(s) 191, 308, 651, 773
TscAI CASTG 2 cut(s) 264, 415
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 3 cut(s) 140, 143, 724
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 5 cut(s) 419, 448, 540, 612, 726
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 2 cut(s) 264, 415
Vha464I CTTAAG 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 475
XceI RCATGY 1 cut(s) 133
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.