pycom10g17560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0020409
Physical Location & Seq
Forward (+)
20806615 .. 20807223
609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGTCAATTGGGTTTCAAATTTCAAATTCCATCCATTTTGTTTCTCTGCAGAAACATCAACTTCTATTGAGAAAGGCCATTGAATCTTTGATGAGACATCATTACTATTGCAGAAGAAAAGCCCCATTCTCATACCCGGTTCTGGTTTTCTTGGCGGTGGTCGCTATGCTTCTTCTTCTGTTGTCTTTGATCTCCTTTGATGTTGAAACCCCAAAATTTGAGATCAATTGGGGGCTCATAGCCACGCCGTTGCTGTTGCTAGCGATTGTGCATTGGTTGTTGTCGGAAACTCCCAAGGCACCATGTTTTGTGCCTCCACCGTGTTGCAAGTGTAAGCTCGGAATCAACCTCAGCCCCGAGGATATCTGCACCAAGAACCCGAAATCAACCTCCCCATTCGGATTTGGAGGAGCTCTGCACCAAGAACTCAGAATCTCCCTCCGCCCCAGAATCAACCTCAGCCCCGAGGAGCTCTGCACCAAGAACCCGGAATCAACCTCAGCCTCGAGGAGCTCTGCACCAAGATCTCTCTGCGACGCGTTGATTGTGCGGGAGGTTGATGGCCCGACTGACATCAGATGGCCCGGCATGTGGGTCTATCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

8.96

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020409)

Species Orthologous Gene IDs
prunus_persica Prupe.8G160000_v2.0.a1
pyrus_communis pycom01g09770 pycom05g23090 pycom06g14550 pycom10g17560
rosa_chinensis RchiOBHm_Chr6g0245561

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 298
AccII CGCG 1 cut(s) 539
AciI CCGC 3 cut(s) 155, 442, 550
AcsI RAATTY 3 cut(s) 18, 25, 215
AfiI CCNNNNNNNGG 2 cut(s) 142, 591
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 17, 24, 83, 206
AluBI AGCT 4 cut(s) 337, 413, 472, 513
AluI AGCT 4 cut(s) 337, 413, 472, 513
Alw21I GWGCWC 3 cut(s) 415, 474, 515
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 3 cut(s) 356, 464, 505
AoxI GGCC 3 cut(s) 75, 562, 581
ApoI RAATTY 3 cut(s) 18, 25, 215
AspS9I GGNCC 2 cut(s) 563, 582
AsuC2I CCSGG 3 cut(s) 137, 488, 585
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 3 cut(s) 356, 464, 505
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 4 cut(s) 237, 415, 474, 515
Bbv12I GWGCWC 3 cut(s) 415, 474, 515
BbvCI CCTCAGC 3 cut(s) 350, 458, 499
BccI CCATC 3 cut(s) 38, 554, 573
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 3 cut(s) 137, 488, 585
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 524
Bme1390I CCNGG 3 cut(s) 137, 488, 585
BmeT110I CYCGRG 3 cut(s) 356, 464, 505
BmgT120I GGNCC 2 cut(s) 563, 582
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 3 cut(s) 137, 488, 585
BmtI GCTAGC 1 cut(s) 263
Bpu10I CCTNAGC 3 cut(s) 350, 458, 499
BpuMI CCSGG 3 cut(s) 137, 488, 585
BsaJI CCNNGG 3 cut(s) 294, 357, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 591
BseDI CCNNGG 3 cut(s) 294, 357, 465
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 142, 591
BseMII CTCAG 4 cut(s) 364, 442, 472, 513
BseRI GAGGAG 3 cut(s) 423, 482, 523
BsgI GTGCAG 4 cut(s) 352, 401, 460, 501
Bsh1236I CGCG 1 cut(s) 539
BshFI GGCC 3 cut(s) 77, 564, 583
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 3 cut(s) 415, 474, 515
BsiHKCI CYCGRG 3 cut(s) 356, 464, 505
BsiSI CCGG 3 cut(s) 137, 488, 585
BslI CCNNNNNNNGG 2 cut(s) 142, 591
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 3 cut(s) 77, 564, 583
BsoBI CYCGRG 3 cut(s) 356, 464, 505
Bsp1286I GDGCHC 4 cut(s) 237, 415, 474, 515
Bsp143I GATC 3 cut(s) 189, 222, 524
BspACI CCGC 3 cut(s) 155, 442, 550
BspANI GGCC 3 cut(s) 77, 564, 583
BspCNI CTCAG 4 cut(s) 363, 441, 471, 512
BspFNI CGCG 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 294, 357, 465
BssMI GATC 3 cut(s) 189, 222, 524
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 350, 428, 458, 499
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 539
BstKTI GATC 3 cut(s) 192, 225, 527
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 189, 222, 524
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 3 cut(s) 135, 486, 583
BstSFI CTRYAG 1 cut(s) 47
BstUI CGCG 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 3 cut(s) 77, 564, 583
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 563, 582
CseI GACGC 1 cut(s) 545
CviAII CATG 2 cut(s) 303, 589
DdeI CTNAG 4 cut(s) 350, 428, 458, 499
DpnI GATC 3 cut(s) 191, 224, 526
DpnII GATC 3 cut(s) 189, 222, 524
EciI GGCGGA 1 cut(s) 431
Ecl136II GAGCTC 3 cut(s) 413, 472, 513
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 4 cut(s) 237, 415, 474, 515
Eco32I GATATC 1 cut(s) 364
Eco53kI GAGCTC 3 cut(s) 413, 472, 513
Eco88I CYCGRG 3 cut(s) 356, 464, 505
EcoICRI GAGCTC 3 cut(s) 413, 472, 513
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 4 cut(s) 237, 415, 474, 515
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 306, 592
FaiI YATR 5 cut(s) 133, 167, 239, 304, 590
FatI CATG 2 cut(s) 302, 588
FauI CCCGC 1 cut(s) 543
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 4 cut(s) 237, 415, 474, 515
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 77, 564, 583
HapII CCGG 3 cut(s) 137, 488, 585
HgaI GACGC 1 cut(s) 545
Hin1II CATG 2 cut(s) 306, 592
HinfI GANTC 5 cut(s) 83, 342, 432, 450, 491
HpaII CCGG 3 cut(s) 137, 488, 585
Hpy188I TCNGA 5 cut(s) 286, 341, 401, 431, 578
Hpy99I CGWCG 1 cut(s) 539
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 8 cut(s) 49, 111, 271, 327, 369, 418, 477, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 350, 428, 458, 499
Hsp92II CATG 2 cut(s) 306, 592
Kzo9I GATC 3 cut(s) 189, 222, 524
LmnI GCTCC 3 cut(s) 410, 469, 510
LpnPI CCDG 5 cut(s) 128, 150, 460, 501, 598
MaeI CTAG 1 cut(s) 260
MalI GATC 3 cut(s) 191, 224, 526
MboI GATC 3 cut(s) 189, 222, 524
MboII GAAGA 3 cut(s) 126, 164, 167
MfeI CAATTG 2 cut(s) 6, 226
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 4 cut(s) 237, 415, 474, 515
MluCI AATT 6 cut(s) 6, 18, 25, 215, 226, 602
MluI ACGCGT 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 264
MspI CCGG 3 cut(s) 137, 488, 585
MspR9I CCNGG 3 cut(s) 137, 488, 585
MunI CAATTG 2 cut(s) 6, 226
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 3 cut(s) 137, 488, 585
NdeII GATC 3 cut(s) 189, 222, 524
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 306, 592
NlaIV GGNNCC 1 cut(s) 300
NspI RCATGY 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 505
PfeI GAWTC 5 cut(s) 83, 342, 432, 450, 491
Psp124BI GAGCTC 3 cut(s) 415, 474, 515
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 563, 582
PspXI VCTCGAGB 1 cut(s) 505
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 524
SacI GAGCTC 3 cut(s) 415, 474, 515
Sau3AI GATC 3 cut(s) 189, 222, 524
Sau96I GGNCC 2 cut(s) 563, 582
ScrFI CCNGG 3 cut(s) 137, 488, 585
SduI GDGCHC 4 cut(s) 237, 415, 474, 515
SetI ASST 9 cut(s) 339, 351, 392, 415, 459, 474, 500, 515, 558
SfcI CTRYAG 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 505
SlaI CTCGAG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
Sse9I AATT 6 cut(s) 6, 18, 25, 215, 226, 602
SsiI CCGC 3 cut(s) 155, 442, 550
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 3 cut(s) 415, 474, 515
StyD4I CCNGG 3 cut(s) 135, 486, 583
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 506
TasI AATT 6 cut(s) 6, 18, 25, 215, 226, 602
TfiI GAWTC 5 cut(s) 83, 342, 432, 450, 491
XapI RAATTY 3 cut(s) 18, 25, 215
XceI RCATGY 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 505
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.