Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0022549

Physical Location & Seq

Genomic Coordinates Forward (+)

21781871 .. 21782488

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAGCCTTCCAATTTCTTTCCACGCATTTTACCTACCAAGAAAAACCGGAAATCCAAATCAGATTTTGGCCTTTCGGCTAATGGATCCCTCCCTGAACTGATGGCAGAGCCTACAAATGTGCGTTCCATGTCATTTGTTGGAACACGCGAATATCTAGCCCCAGAGATTATTCGCGGAGAGGGCCATGGTAGTGCAGTGGACTGGTGGACATTTGGTATCTTCTTATACGAGCTCTTACATGGGACAACCCCCTTCAAAGGTCAAGGAAATCGTGCCACGCTCTTCAACGTTGTAGGCCAGCCTCTGAAATTCCCAGAAACACCACAAGTAAGCGTTGTGGTGCGTAATCTCATACGAGGACTCTTGGTGAAAGAACCACATAAACGAATTGCGTACAAAAGGGGTGCCACAGAAATAAAGCAACACCCATTTTTCGAGGGAGTGAAATGGGCTCTGGTGAGATGTGCCACGCCTCCCCATGTTCCTGAACCGGTAAACTTTTCACAATATGCCAGCAAGGAGGCCAACTCTGCAGACAAAAAGATGACAGATGTGGGAAGTGATAAGAAGAACGGTAGTAATGATTCATCTTATGTAGATTTTGAGTACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

206

Amino Acids

22.99

Weight (kDa)

9.49

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 146	6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 134	2.5e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022549)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18500 pycom10g18540
rosa_multiflora	Rmu_co8342157.1_g000001 Rmu_sc0019359.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AccII	CGCG	2 cut(s)	150, 177
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	81, 94
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	2 cut(s)	398, 611
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	259, 289
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	81, 94
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	4 cut(s)	70, 184, 298, 525
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	382, 472
BamHI	GGATCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	237, 457
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	158, 616
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	88, 409
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	2 cut(s)	48, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	150, 177
BshFI	GGCC	4 cut(s)	72, 186, 300, 527
BshNI	GGYRCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	49, 494
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	72, 186, 300, 527
Bsp1286I	GDGCHC	2 cut(s)	237, 457
Bsp143I	GATC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	4 cut(s)	72, 186, 300, 527
BspFNI	CGCG	2 cut(s)	150, 177
BspLI	GGNNCC	2 cut(s)	88, 409
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	2 cut(s)	81, 94
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	302, 517
BstDSI	CCRYGG	1 cut(s)	187
BstFNI	CGCG	2 cut(s)	150, 177
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 533
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	2 cut(s)	150, 177
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	72, 186, 300, 527
BtgI	CCRYGG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	302, 517
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	397, 610
CspAI	ACCGGT	1 cut(s)	493
CviAII	CATG	4 cut(s)	130, 188, 242, 482
CviQI	GTAC	2 cut(s)	397, 610
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	237, 457
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	237, 457
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	133, 191, 245, 485
FaiI	YATR	9 cut(s)	131, 189, 229, 243, 356, 384, 483, 513, 597
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	4 cut(s)	129, 187, 241, 481
Fnu4HI	GCNGC	1 cut(s)	5
FriOI	GRGCYC	2 cut(s)	237, 457
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	158, 616
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	4 cut(s)	72, 186, 300, 527
HapII	CCGG	2 cut(s)	49, 494
Hin1II	CATG	4 cut(s)	133, 191, 245, 485
HinfI	GANTC	2 cut(s)	363, 587
HpaII	CCGG	2 cut(s)	49, 494
HphI	GGTGA	2 cut(s)	382, 472
Hpy166II	GTNNAC	3 cut(s)	202, 210, 499
Hpy188I	TCNGA	2 cut(s)	64, 309
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	3 cut(s)	202, 210, 499
HpyAV	CCTTC	2 cut(s)	18, 265
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	4, 197, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 533
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	133, 191, 245, 485
Kzo9I	GATC	1 cut(s)	86
LguI	GCTCTTC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	158, 616
MaeII	ACGT	1 cut(s)	291
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	214, 277, 583
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	237, 457
MluCI	AATT	3 cut(s)	13, 311, 390
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	101, 175, 315, 353, 433, 486, 517
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	2 cut(s)	49, 494
MvnI	CGCG	2 cut(s)	150, 177
MwoI	GCNNNNNNNGC	2 cut(s)	183, 533
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	133, 191, 245, 485
NlaIV	GGNNCC	2 cut(s)	88, 409
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	587
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	237
Psp1406I	AACGTT	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	88, 409
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	398, 611
RsaNI	GTAC	2 cut(s)	397, 610
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	184
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	2 cut(s)	237, 457
SetI	ASST	4 cut(s)	37, 237, 265, 294
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	13, 311, 390
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	158, 616
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	13, 311, 390
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	2 cut(s)	158, 616
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.