Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342157.1

Orthogroup ID

OG0022549

Physical Location & Seq

Genomic Coordinates Forward (+)

55 .. 816

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgctctctgactttgatctatcactccgctgttctgtgaatcctacactagtcaagtcttcatctgttcatgtaagcaatggtggtggtggtggtggttctgggggcattttggaggaggagtatgctgtccagggttgtatgcagccatccaatttctttccacgcattttaccttccaagaagagccgcaaatctaaatcagattttggcctttctgctaataactccctcccggaactgatggcagagcctacaaatgtgcgctccatgtcatttgtcggaacacatgaatatctagccccagagattatccgcggagagggccatggtagtgcagtggactggtggacgtttggcatcttcttatatgagctcttacatggaacaaccccgttcaagggccacggaaatcgtgccacactttttaacgtcgtaggtcagcctctgaagttcccagaaactccacaagtaagtcctgttgcacgtaatctcattcgagggctcttgatcaaagaaccaaataagcgaattgcatacaaaaggggtgccacagaaataaaacaacacccattttttgagggagtgaactgggctctagtgagatgtgccatgccccctcatgtgcctgaacctgtagacttttcacaatatgttagcaaggaggcaagcgctcctgacaaaaagatgccagacgaggggggtaataaaaaggacagtaaccctaatgattcttcttatgtagattttgagtacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

27.84

Weight (kDa)

7.06

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022549)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18500 pycom10g18540
rosa_multiflora	Rmu_co8342157.1_g000001 Rmu_sc0019359.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	639
AccII	CGCG	1 cut(s)	318
AciI	CCGC	4 cut(s)	28, 190, 316, 318
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	755
AfeI	AGCGCT	1 cut(s)	673
AfiI	CCNNNNNNNGG	4 cut(s)	322, 400, 401, 698
AgsI	TTSAA	1 cut(s)	400
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw21I	GWGCWC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	673
AoxI	GGCC	3 cut(s)	211, 325, 403
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	267, 674
AspS9I	GGNCC	2 cut(s)	325, 403
AsuC2I	CCSGG	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	3 cut(s)	378, 507, 598
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	157, 238
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	50, 299, 599
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	675
BisI	GCNGC	2 cut(s)	146, 190
BlsI	GCNGC	2 cut(s)	147, 191
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	2 cut(s)	134, 236
BmgT120I	GGNCC	2 cut(s)	325, 403
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	134, 236
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	369, 678
BmuI	ACTGGG	1 cut(s)	601
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	133, 316, 328, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 400, 401, 698
Bse1I	ACTGG	2 cut(s)	350, 596
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	4 cut(s)	133, 316, 328, 406
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	4 cut(s)	322, 400, 401, 698
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	2 cut(s)	350, 596
BseRI	GAGGAG	2 cut(s)	131, 134
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	213, 327, 405
BshNI	GGYRCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	4 cut(s)	322, 400, 401, 698
BsnI	GGCC	3 cut(s)	213, 327, 405
Bsp1286I	GDGCHC	3 cut(s)	378, 507, 598
Bsp143I	GATC	2 cut(s)	16, 510
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	4 cut(s)	28, 190, 316, 318
BspANI	GGCC	3 cut(s)	213, 327, 405
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	550
BspQI	GCTCTTC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	350, 596
BssECI	CCNNGG	4 cut(s)	133, 316, 328, 406
BssMI	GATC	2 cut(s)	16, 510
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	670
BstDSI	CCRYGG	3 cut(s)	316, 328, 406
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	2 cut(s)	267, 674
BstKTI	GATC	2 cut(s)	19, 513
BstMBI	GATC	2 cut(s)	16, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 234
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	213, 327, 405
BtgI	CCRYGG	3 cut(s)	316, 328, 406
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	2 cut(s)	267, 674
Cfr13I	GGNCC	2 cut(s)	325, 403
Cfr42I	CCGCGG	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	7 cut(s)	71, 271, 290, 329, 383, 613, 623
CviQI	GTAC	1 cut(s)	754
DpnI	GATC	2 cut(s)	18, 512
DpnII	GATC	2 cut(s)	16, 510
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	3 cut(s)	378, 507, 598
Eco47III	AGCGCT	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	3 cut(s)	378, 507, 598
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	7 cut(s)	74, 274, 293, 332, 386, 616, 626
FatI	CATG	7 cut(s)	70, 270, 289, 328, 382, 612, 622
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	2 cut(s)	146, 190
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	3 cut(s)	378, 507, 598
Fsp4HI	GCNGC	2 cut(s)	146, 190
FspBI	CTAG	3 cut(s)	50, 299, 599
GlaI	GCGC	2 cut(s)	266, 673
GluI	GCNGC	2 cut(s)	146, 190
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	213, 327, 405
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	2 cut(s)	267, 674
Hin1II	CATG	7 cut(s)	74, 274, 293, 332, 386, 616, 626
Hin6I	GCGC	2 cut(s)	265, 672
HinP1I	GCGC	2 cut(s)	265, 672
HinfI	GANTC	2 cut(s)	40, 731
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	4 cut(s)	343, 351, 589, 640
Hpy188I	TCNGA	4 cut(s)	10, 205, 284, 450
Hpy188III	TCNNGA	2 cut(s)	508, 677
Hpy8I	GTNNAC	4 cut(s)	343, 351, 589, 640
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	3 cut(s)	353, 432, 487
HpyCH4V	TGCA	4 cut(s)	145, 338, 485, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpySE526I	ACGT	3 cut(s)	353, 432, 487
Hsp92II	CATG	7 cut(s)	74, 274, 293, 332, 386, 616, 626
HspAI	GCGC	2 cut(s)	265, 672
Ksp22I	TGATCA	1 cut(s)	510
KspI	CCGCGG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	16, 510
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	272, 679
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	369, 678
MaeI	CTAG	3 cut(s)	50, 299, 599
MaeII	ACGT	3 cut(s)	353, 432, 487
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	2 cut(s)	18, 512
MboI	GATC	2 cut(s)	16, 510
MboII	GAAGA	4 cut(s)	51, 196, 355, 726
MhlI	GDGCHC	3 cut(s)	378, 507, 598
MluCI	AATT	2 cut(s)	154, 531
MmeI	TCCRAC	1 cut(s)	262
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	2 cut(s)	30, 318
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	134, 236
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	16, 510
NlaIII	CATG	7 cut(s)	74, 274, 293, 332, 386, 616, 626
NlaIV	GGNNCC	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	40, 731
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	147, 191
Ppu21I	YACGTR	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	325, 403
PstNI	CAGNNNCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	146, 190
Sau3AI	GATC	2 cut(s)	16, 510
Sau96I	GGNCC	2 cut(s)	325, 403
ScaI	AGTACT	1 cut(s)	755
ScrFI	CCNGG	2 cut(s)	134, 236
SduI	GDGCHC	3 cut(s)	378, 507, 598
SetI	ASST	7 cut(s)	178, 356, 378, 435, 442, 490, 637
SfaNI	GCATC	2 cut(s)	369, 678
SfcI	CTRYAG	1 cut(s)	636
Sfr303I	CCGCGG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	2 cut(s)	154, 531
SsiI	CCGC	4 cut(s)	28, 190, 316, 318
SspMI	CTAG	3 cut(s)	50, 299, 599
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	132, 234
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	3 cut(s)	356, 435, 490
TaqI	TCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	154, 531
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	40, 731
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	51, 59, 306
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	3 cut(s)	50, 299, 599
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.