Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0022549

Physical Location & Seq

Genomic Coordinates Forward (+)

21797731 .. 21798423

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTATGGTGGTGCTGCCGGTGGTGGTGGTGGTGGCAGGGGCATTTTAGACGATGACCTTGCTGTGCATGGTTGTATGCAGCCGTCCAATTTCTTTCCACGCATTTTACCTACCAAGAAAAACCGGAAATCCAAATCAGATTTTGGCCTTTCAGCTAATGGATCCCTCCCTGAACTGATGGCAGAGCCTACAAATGTGCGTTCCATGTCATTTGTTGGAATACACGAATATCTAGCCCCAGAGATTATTCGCGGAGAGGGCCATGGTAGTGCAGTGGGCTGGTGGACATTTGGTATCTTCTTATACGAGCTCTTACATGGGACAACCCCCTTCAAGGGTCAAGGAAATCGTGCCATTCTCTTCAACGTTGTAGGCCAGCCTCTGAAATTCCCAGAAACACCACCGGTAAGTGTTGTGGCGCGTAATCTCATACGAGGACTCTTGGTGAAAGAACCACATAAACGAATTGCGTACAAAAGGGGTGCCACAGAAATAAAGCAACACCCATTTTTCGAGGGAGTGAACTGGGCTCTGGTGAGATGTGCCACGCCTCCCCATGTTCCTGAACCGGTAGACTTTTCACAATATGCCAGCAAGGAGGCGAACTCTGCAGACAAAAAGATGACAGACGTGGGAAGTGATAAGAAGAACGGTAGTAATGATTCATCTTATGTAGATTTTGAGTACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

231

Amino Acids

25.13

Weight (kDa)

8.78

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 171	3.3e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022549)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18500 pycom10g18540
rosa_multiflora	Rmu_co8342157.1_g000001 Rmu_sc0019359.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	252, 421
AciI	CCGC	1 cut(s)	252
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	2 cut(s)	156, 169
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	473, 686
AfiI	CCNNNNNNNGG	2 cut(s)	334, 335
AgeI	ACCGGT	2 cut(s)	403, 568
AgsI	TTSAA	2 cut(s)	334, 364
AjiI	CACGTC	1 cut(s)	631
AluBI	AGCT	2 cut(s)	155, 310
AluI	AGCT	2 cut(s)	155, 310
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	156, 169
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	3 cut(s)	145, 259, 373
ApeKI	GCWGC	2 cut(s)	14, 79
ApoI	RAATTY	1 cut(s)	386
AsiGI	ACCGGT	2 cut(s)	403, 568
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	457, 547
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	312, 532
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BfaI	CTAG	2 cut(s)	233, 691
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	2 cut(s)	15, 80
BlsI	GCNGC	2 cut(s)	16, 81
BmcAI	AGTACT	1 cut(s)	686
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	163, 484
BmrI	ACTGGG	1 cut(s)	535
BmuI	ACTGGG	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	3 cut(s)	123, 403, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 335
Bse118I	RCCGGY	3 cut(s)	17, 403, 568
Bse1I	ACTGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	334, 335
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	2 cut(s)	252, 421
BshFI	GGCC	3 cut(s)	147, 261, 375
BshNI	GGYRCC	1 cut(s)	482
BshTI	ACCGGT	2 cut(s)	403, 568
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	4 cut(s)	18, 124, 404, 569
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	334, 335
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	147, 261, 375
Bsp1286I	GDGCHC	2 cut(s)	312, 532
Bsp143I	GATC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	147, 261, 375
BspFNI	CGCG	2 cut(s)	252, 421
BspLI	GGNNCC	2 cut(s)	163, 484
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	156, 169
BspT107I	GGYRCC	1 cut(s)	482
BsrFI	RCCGGY	3 cut(s)	17, 403, 568
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	3 cut(s)	17, 403, 568
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	377, 592
BstDSI	CCRYGG	1 cut(s)	262
BstFNI	CGCG	2 cut(s)	252, 421
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 608
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	2 cut(s)	252, 421
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	147, 261, 375
BtgI	CCRYGG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	377, 592
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	3 cut(s)	17, 403, 568
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	472, 685
CspAI	ACCGGT	2 cut(s)	403, 568
CviAII	CATG	5 cut(s)	68, 205, 263, 317, 557
CviQI	GTAC	2 cut(s)	472, 685
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	312, 532
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	312, 532
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	5 cut(s)	71, 208, 266, 320, 560
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	5 cut(s)	67, 204, 262, 316, 556
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	15, 80
FriOI	GRGCYC	2 cut(s)	312, 532
Fsp4HI	GCNGC	2 cut(s)	15, 80
FspBI	CTAG	2 cut(s)	233, 691
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	15, 80
HaeIII	GGCC	3 cut(s)	147, 261, 375
HapII	CCGG	4 cut(s)	18, 124, 404, 569
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	5 cut(s)	71, 208, 266, 320, 560
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	438, 662
HpaII	CCGG	4 cut(s)	18, 124, 404, 569
HphI	GGTGA	2 cut(s)	457, 547
Hpy166II	GTNNAC	3 cut(s)	285, 523, 574
Hpy188I	TCNGA	2 cut(s)	139, 384
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	3 cut(s)	285, 523, 574
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	2 cut(s)	366, 630
HpyCH4V	TGCA	4 cut(s)	67, 79, 272, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 608
HpySE526I	ACGT	2 cut(s)	366, 630
Hsp92II	CATG	5 cut(s)	71, 208, 266, 320, 560
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	233, 691
MaeII	ACGT	2 cut(s)	366, 630
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	289, 352, 658
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	312, 532
MluCI	AATT	3 cut(s)	88, 386, 465
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	176, 250, 390, 428, 508, 561, 592
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	4 cut(s)	18, 124, 404, 569
MvnI	CGCG	2 cut(s)	252, 421
MwoI	GCNNNNNNNGC	2 cut(s)	258, 608
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	71, 208, 266, 320, 560
NlaIV	GGNNCC	2 cut(s)	163, 484
PfeI	GAWTC	1 cut(s)	662
PinAI	ACCGGT	2 cut(s)	403, 568
PkrI	GCNGC	2 cut(s)	16, 81
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	163, 484
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	2 cut(s)	473, 686
RsaNI	GTAC	2 cut(s)	472, 685
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	2 cut(s)	15, 80
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	259
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	312, 532
SetI	ASST	6 cut(s)	60, 112, 157, 312, 369, 633
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	88, 386, 465
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	233, 691
SstI	GAGCTC	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	2 cut(s)	369, 633
TaqI	TCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	88, 386, 465
TatI	WGTACW	1 cut(s)	684
TfiI	GAWTC	1 cut(s)	662
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	2 cut(s)	14, 79
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	233, 691
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.