Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019359.1

Orthogroup ID

OG0022549

Physical Location & Seq

Genomic Coordinates Reverse (-)

4608 .. 5435

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019359.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgcttggaattgtgtacagggatttaaaaccagaaaatgttctagtaagagatgagggccatatcatgctctctgactttgatctatcactccgctgttctgtgaatcctacactagtcaagtcttcatctgtccatgtaagcaatggtggtggtggtggtggttctgggggcattttggaggaggagtatgctgtccagggttgtatgcagccatccaatttctttccacgcattttaccttccaagaagagccgcaaatctaaatcagattttggcctttctgctaataactccctcccggaactgatggcagagcctacaaatgtgcgctccatgtcatttgttggaacacatgaatatctagccccagagattatccgcggagagggccatggtagtgcagtggactggtggacgtttggcatcttcttatatgagctcttacatggaacaaccccgttcaagggccacggaaatcgtgccacactttttaacgtcgtaggtcagcctctgaagttcccagaaactccacaagtaagtcctgttgcacgtaatctcattcgagggctcttgatcaaagaaccaaataagcgaattgcatacaaaaggggtgccacagaaataaaacaacacccattttttgagggagtgaactgggctctagtgagatgtgccatgccccctcatgtgcctgaacccgtagacttttcacaatatgttagcaaggaggcaagcgctcctgacaaaaagatgccagacgaggggggtaataaaaaggacagtaaccctaatgattcttcttatgtagattttgagtacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

275

Amino Acids

30.39

Weight (kDa)

6.72

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022549)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18500 pycom10g18540
rosa_multiflora	Rmu_co8342157.1_g000001 Rmu_sc0019359.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	1 cut(s)	384
AciI	CCGC	4 cut(s)	94, 256, 382, 384
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	2 cut(s)	17, 821
AfeI	AGCGCT	1 cut(s)	739
AfiI	CCNNNNNNNGG	4 cut(s)	388, 466, 467, 764
AgsI	TTSAA	1 cut(s)	466
AhlI	ACTAGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	739
AoxI	GGCC	4 cut(s)	58, 277, 391, 469
ApeKI	GCWGC	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	333, 740
AspS9I	GGNCC	3 cut(s)	58, 391, 469
AsuC2I	CCSGG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	3 cut(s)	444, 573, 664
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	223, 304
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	302
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	4 cut(s)	44, 116, 365, 665
BfoI	RGCGCY	1 cut(s)	741
BisI	GCNGC	2 cut(s)	212, 256
BlsI	GCNGC	2 cut(s)	213, 257
BmcAI	AGTACT	1 cut(s)	821
Bme1390I	CCNGG	2 cut(s)	200, 302
BmgT120I	GGNCC	3 cut(s)	58, 391, 469
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	200, 302
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	435, 744
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	199, 382, 394, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 466, 467, 764
Bse1I	ACTGG	2 cut(s)	416, 662
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	4 cut(s)	199, 382, 394, 472
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	4 cut(s)	388, 466, 467, 764
BseMI	GCAATG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	416, 662
BseRI	GAGGAG	2 cut(s)	197, 200
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	60, 279, 393, 471
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	4 cut(s)	388, 466, 467, 764
BsnI	GGCC	4 cut(s)	60, 279, 393, 471
Bsp1286I	GDGCHC	3 cut(s)	444, 573, 664
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	82, 576
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	4 cut(s)	94, 256, 382, 384
BspANI	GGCC	4 cut(s)	60, 279, 393, 471
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	416, 662
BssECI	CCNNGG	4 cut(s)	199, 382, 394, 472
BssMI	GATC	2 cut(s)	82, 576
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	736
BstDSI	CCRYGG	3 cut(s)	382, 394, 472
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	2 cut(s)	333, 740
BstKTI	GATC	2 cut(s)	85, 579
BstMBI	GATC	2 cut(s)	82, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	198, 300
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	60, 279, 393, 471
BtgI	CCRYGG	3 cut(s)	382, 394, 472
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	736
CaiI	CAGNNNCTG	1 cut(s)	514
CfoI	GCGC	2 cut(s)	333, 740
Cfr13I	GGNCC	3 cut(s)	58, 391, 469
Cfr42I	CCGCGG	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	16, 820
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	8 cut(s)	67, 137, 337, 356, 395, 449, 679, 689
CviQI	GTAC	2 cut(s)	16, 820
DpnI	GATC	2 cut(s)	84, 578
DpnII	GATC	2 cut(s)	82, 576
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	3 cut(s)	444, 573, 664
Eco47III	AGCGCT	1 cut(s)	739
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	3 cut(s)	444, 573, 664
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	8 cut(s)	70, 140, 340, 359, 398, 452, 682, 692
FatI	CATG	8 cut(s)	66, 136, 336, 355, 394, 448, 678, 688
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	2 cut(s)	212, 256
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	3 cut(s)	444, 573, 664
Fsp4HI	GCNGC	2 cut(s)	212, 256
FspBI	CTAG	4 cut(s)	44, 116, 365, 665
GlaI	GCGC	2 cut(s)	332, 739
GluI	GCNGC	2 cut(s)	212, 256
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	4 cut(s)	60, 279, 393, 471
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	2 cut(s)	333, 740
Hin1II	CATG	8 cut(s)	70, 140, 340, 359, 398, 452, 682, 692
Hin6I	GCGC	2 cut(s)	331, 738
HinP1I	GCGC	2 cut(s)	331, 738
HinfI	GANTC	2 cut(s)	106, 797
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	5 cut(s)	16, 409, 417, 655, 706
Hpy188I	TCNGA	3 cut(s)	76, 271, 516
Hpy188III	TCNNGA	2 cut(s)	574, 743
Hpy8I	GTNNAC	5 cut(s)	16, 409, 417, 655, 706
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	3 cut(s)	419, 498, 553
HpyCH4V	TGCA	4 cut(s)	211, 404, 551, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpySE526I	ACGT	3 cut(s)	419, 498, 553
Hsp92II	CATG	8 cut(s)	70, 140, 340, 359, 398, 452, 682, 692
HspAI	GCGC	2 cut(s)	331, 738
Ksp22I	TGATCA	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	82, 576
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	338, 745
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	435, 744
MaeI	CTAG	4 cut(s)	44, 116, 365, 665
MaeII	ACGT	3 cut(s)	419, 498, 553
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	2 cut(s)	84, 578
MboI	GATC	2 cut(s)	82, 576
MboII	GAAGA	4 cut(s)	117, 262, 421, 792
MhlI	GDGCHC	3 cut(s)	444, 573, 664
MluCI	AATT	3 cut(s)	9, 220, 597
MmeI	TCCRAC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	2 cut(s)	26, 495
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	96, 384
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	200, 302
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	82, 576
NlaIII	CATG	8 cut(s)	70, 140, 340, 359, 398, 452, 682, 692
NlaIV	GGNNCC	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	106, 797
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	213, 257
Ppu21I	YACGTR	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	3 cut(s)	58, 391, 469
PstNI	CAGNNNCTG	1 cut(s)	514
RsaI	GTAC	2 cut(s)	17, 821
RsaNI	GTAC	2 cut(s)	16, 820
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	444
SacII	CCGCGG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	26, 495
SatI	GCNGC	2 cut(s)	212, 256
Sau3AI	GATC	2 cut(s)	82, 576
Sau96I	GGNCC	3 cut(s)	58, 391, 469
ScaI	AGTACT	1 cut(s)	821
ScrFI	CCNGG	2 cut(s)	200, 302
SduI	GDGCHC	3 cut(s)	444, 573, 664
SetI	ASST	6 cut(s)	244, 422, 444, 501, 508, 556
SfaNI	GCATC	2 cut(s)	435, 744
Sfr303I	CCGCGG	1 cut(s)	385
SgrBI	CCGCGG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	399
SpeI	ACTAGT	1 cut(s)	115
Sse9I	AATT	3 cut(s)	9, 220, 597
SsiI	CCGC	4 cut(s)	94, 256, 382, 384
SspMI	CTAG	4 cut(s)	44, 116, 365, 665
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	198, 300
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	3 cut(s)	422, 501, 556
TaqI	TCGA	1 cut(s)	565
TasI	AATT	3 cut(s)	9, 220, 597
TatI	WGTACW	2 cut(s)	15, 819
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	106, 797
Tru1I	TTAA	2 cut(s)	26, 495
Tru9I	TTAA	2 cut(s)	26, 495
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	117, 372
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	4 cut(s)	44, 116, 365, 665
ZrmI	AGTACT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.