pycom10g18850

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011102
Physical Location & Seq
Reverse (-)
22109079 .. 22109969
891 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGGCGAAGGAGAAGAAGCTGCCCGTCGGAGTCGTCTGGAACTACGCCGTGGAGCTGAAGCTACTACTCACGGCTCTGTTAATCCTCTGCACATTAGCTACTCTTCTCCAATTCATCCCTTCCCGCTTCACCTTCTCCACCTCCGACCTCCGCTTCTGCATCTCCAGAGTCATCCCTCTGGCCCAAGTCCAGGCCCTCGCCCAAGCACCGGTCCAGTCAGATATAGCCAACGCAACCGCCGTAGCTGCAGCACTACTCTCTTCGCCAGCACCGTCATCAATACCATCGTCCCCGCTGCCAACGCCACCGCCGCCTCCGCCGCCATCTGTTGAGCTCGACAAGGTGCTCAGCAATGGCGTCCTCAAACGGGCGTTCAACCCGTACGGCTCCGCCGCCTACAGCTTCATCACCATGGGAACTTACAGAGGCGGGATGAACACTTTCGCCATTGTGGGTCTGGCCTCGAAGCCTCTCCACGTCTTCTCCAACCCCAAGTACGAGTGCCAGTGGGTCCCCAATCTCAATTCGACCCCACCCATTTCTTCAATCGGGTATAAAATCCTCCCGGATTGGGGCTACGGCCGGGTCTACACCGTCGTGGTCGTGAACTGCACATTCTCCCGGCCCATCAATGCTGACAACTCCGGCGGTAAGCTCCTCCTATTAGCCACCACCGAAGGCGGCGGAGACCGGAATTTCAACACTACCGACACAATACAGGCCTTAACCGAAGCCCCCGGAACTGTAAACGCCGGAATCTTCACCGCCAAGCCAAAATACGACTATTTCTACTGTGGGTCTTCGTTGTTCGGAAATCTGAGTCCCCAGAGAGTGAGGGAGTGGATTGCTTACCACGTCCGGCTGTTCGGGCCGAGATCGACCATTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009987 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

297

Amino Acids

31.91

Weight (kDa)

9.36

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20170 AT5G44670
fragaria_vesca FvH4_3g13330 FvH4_3g13330
malus_domestica MD05G1242800.v1.1 MD10G1224800.v1.1
prunus_persica Prupe.4G120600_v2.0.a1
pyrus_communis pycom05g21940 pycom10g18850
rosa_chinensis RchiOBHm_Chr5g0021801
rosa_laevigata RLG00000032629
rosa_multiflora Rmu_co8317171.1_g000001 Rmu_ssc0000023.1_g000003
rosa_roxburghii Rroxscaffold_1G00056920
rosa_rugosa Rorug05G0069600
rosa_samantha Rh5AG158100 Rh5BG157700 Rh5CG171800 Rh5DG157900
rosa_wichuraiana Rw5G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 588
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 2 cut(s) 383, 497
AfiI CCNNNNNNNGG 5 cut(s) 190, 208, 367, 571, 572
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 376, 546, 700
AjiI CACGTC 2 cut(s) 478, 856
AjnI CCWGG 1 cut(s) 189
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 8 cut(s) 19, 55, 61, 98, 245, 334, 402, 655
AluI AGCT 8 cut(s) 19, 55, 61, 98, 245, 334, 402, 655
Alw21I GWGCWC 2 cut(s) 336, 348
Alw26I GTCTC 1 cut(s) 681
AoxI GGCC 7 cut(s) 180, 192, 459, 580, 623, 720, 869
ApeKI GCWGC 4 cut(s) 19, 245, 248, 295
ApoI RAATTY 1 cut(s) 694
AsiGI ACCGGT 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 6 cut(s) 181, 193, 211, 511, 624, 869
AsuC2I CCSGG 4 cut(s) 566, 584, 622, 738
AsuHPI GGTGA 3 cut(s) 121, 400, 754
AvaII GGWCC 2 cut(s) 211, 511
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 2 cut(s) 472, 792
Bbv12I GWGCWC 2 cut(s) 336, 348
BbvI GCAGC 4 cut(s) 6, 232, 260, 282
BccI CCATC 3 cut(s) 292, 331, 635
BceAI ACGGC 5 cut(s) 32, 87, 224, 400, 595
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 4 cut(s) 566, 584, 622, 738
BcoDI GTCTC 1 cut(s) 681
BfmI CTRYAG 2 cut(s) 246, 397
BisI GCNGC 8 cut(s) 20, 246, 249, 296, 311, 320, 393, 682
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 8 cut(s) 21, 247, 250, 297, 312, 321, 394, 683
Bme1390I CCNGG 5 cut(s) 191, 566, 584, 622, 738
Bme18I GGWCC 2 cut(s) 211, 511
BmgBI CACGTC 2 cut(s) 478, 856
BmgT120I GGNCC 6 cut(s) 181, 193, 211, 511, 624, 869
BmiI GGNNCC 3 cut(s) 388, 512, 513
BmrFI CCNGG 5 cut(s) 191, 566, 584, 622, 738
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 472, 792
BpmI CTGGAG 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 347
BpuMI CCSGG 4 cut(s) 566, 584, 622, 738
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 48, 411, 736
BsaWI WCCGGW 2 cut(s) 208, 690
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 208, 367, 571, 572
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 214, 505
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 48, 411, 736
BseGI GGATG 3 cut(s) 114, 171, 438
BseLI CCNNNNNNNGG 5 cut(s) 190, 208, 367, 571, 572
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 361, 809
BseNI ACTGG 2 cut(s) 214, 505
BseRI GAGGAG 1 cut(s) 647
BseX3I CGGCCG 1 cut(s) 580
BseXI GCAGC 4 cut(s) 6, 232, 260, 282
BsgI GTGCAG 2 cut(s) 73, 595
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 7 cut(s) 182, 194, 461, 582, 625, 722, 871
BshTI ACCGGT 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 583
BsiHKAI GWGCWC 2 cut(s) 336, 348
BsiSI CCGG 9 cut(s) 209, 566, 583, 622, 645, 691, 738, 753, 859
BsiWI CGTACG 1 cut(s) 381
BslFI GGGAC 3 cut(s) 274, 497, 807
BslI CCNNNNNNNGG 5 cut(s) 190, 208, 367, 571, 572
BsmAI GTCTC 1 cut(s) 681
BsmFI GGGAC 3 cut(s) 274, 497, 807
BsnI GGCC 7 cut(s) 182, 194, 461, 582, 625, 722, 871
Bso31I GGTCTC 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 336, 348
Bsp143I GATC 1 cut(s) 875
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 411
BspANI GGCC 7 cut(s) 182, 194, 461, 582, 625, 722, 871
BspCNI CTCAG 2 cut(s) 360, 810
BspLI GGNNCC 3 cut(s) 388, 512, 513
BspMAI CTGCAG 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 2 cut(s) 214, 505
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 48, 411, 736
BssMI GATC 1 cut(s) 875
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 273, 595, 745, 794
Bst6I CTCTTC 2 cut(s) 108, 265
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 347, 818
BstDSI CCRYGG 2 cut(s) 48, 411
BstF5I GGATG 3 cut(s) 114, 171, 438
BstKTI GATC 1 cut(s) 878
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 1 cut(s) 875
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 6 cut(s) 245, 301, 310, 316, 319, 868
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 5 cut(s) 189, 564, 582, 620, 736
BstSFI CTRYAG 2 cut(s) 246, 397
BstV1I GCAGC 4 cut(s) 6, 232, 260, 282
BstV2I GAAGAC 2 cut(s) 472, 792
BstZI CGGCCG 1 cut(s) 580
BsuRI GGCC 7 cut(s) 182, 194, 461, 582, 625, 722, 871
BtgI CCRYGG 2 cut(s) 48, 411
BtrI CACGTC 2 cut(s) 478, 856
BtsCI GGATG 3 cut(s) 114, 171, 438
BtsIMutI CAGTG 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 6 cut(s) 181, 193, 211, 511, 624, 869
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 382, 496
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 1 cut(s) 412
CviQI GTAC 2 cut(s) 382, 496
DdeI CTNAG 2 cut(s) 347, 818
DpnI GATC 1 cut(s) 877
DpnII GATC 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 580
EagI CGGCCG 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 108, 265
EarI CTCTTC 2 cut(s) 108, 265
EciI GGCGGA 3 cut(s) 306, 379, 699
Ecl136II GAGCTC 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 681
Eco47I GGWCC 2 cut(s) 211, 511
Eco52I CGGCCG 1 cut(s) 580
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 193, 511
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 415
FaiI YATR 3 cut(s) 224, 413, 555
FaqI GGGAC 3 cut(s) 274, 497, 807
FatI CATG 1 cut(s) 411
FauI CCCGC 3 cut(s) 131, 300, 422
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 8 cut(s) 20, 246, 249, 296, 311, 320, 393, 682
FokI GGATG 3 cut(s) 101, 158, 445
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 8 cut(s) 20, 246, 249, 296, 311, 320, 393, 682
GluI GCNGC 8 cut(s) 20, 246, 249, 296, 311, 320, 393, 682
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 7 cut(s) 182, 194, 461, 582, 625, 722, 871
HapII CCGG 9 cut(s) 209, 566, 583, 622, 645, 691, 738, 753, 859
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 1 cut(s) 415
HinfI GANTC 4 cut(s) 30, 168, 756, 820
HpaII CCGG 9 cut(s) 209, 566, 583, 622, 645, 691, 738, 753, 859
HphI GGTGA 3 cut(s) 121, 400, 754
Hpy166II GTNNAC 3 cut(s) 589, 607, 748
Hpy188I TCNGA 5 cut(s) 29, 145, 220, 812, 819
Hpy188III TCNNGA 3 cut(s) 37, 165, 604
Hpy8I GTNNAC 3 cut(s) 589, 607, 748
Hpy99I CGWCG 2 cut(s) 29, 599
HpyAV CCTTC 3 cut(s) 129, 142, 671
HpyCH4III ACNGT 4 cut(s) 273, 595, 745, 794
HpyCH4IV ACGT 2 cut(s) 477, 855
HpyCH4V TGCA 4 cut(s) 90, 159, 248, 612
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 301, 310, 316, 319, 868
HpyF3I CTNAG 2 cut(s) 347, 818
HpySE526I ACGT 2 cut(s) 477, 855
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 1 cut(s) 415
KflI GGGWCCC 1 cut(s) 511
Kzo9I GATC 1 cut(s) 875
LmnI GCTCC 3 cut(s) 52, 392, 660
Lsp1109I GCAGC 4 cut(s) 6, 232, 260, 282
LweI GCATC 1 cut(s) 168
MaeII ACGT 2 cut(s) 477, 855
MalI GATC 1 cut(s) 877
MboI GATC 1 cut(s) 875
MboII GAAGA 7 cut(s) 25, 95, 252, 472, 534, 751, 792
MhlI GDGCHC 2 cut(s) 336, 348
MluCI AATT 3 cut(s) 110, 523, 694
MlyI GAGTC 3 cut(s) 39, 177, 829
MmeI TCCRAC 3 cut(s) 7, 168, 510
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 2 cut(s) 80, 725
MslI CAYNNNNRTG 2 cut(s) 410, 596
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 9 cut(s) 209, 566, 583, 622, 645, 691, 738, 753, 859
MspR9I CCNGG 5 cut(s) 191, 566, 584, 622, 738
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 6 cut(s) 245, 301, 310, 316, 319, 868
NciI CCSGG 4 cut(s) 566, 584, 622, 738
NcoI CCATGG 1 cut(s) 411
NdeII GATC 1 cut(s) 875
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 3 cut(s) 388, 512, 513
OliI CACNNNNGTG 1 cut(s) 596
PceI AGGCCT 1 cut(s) 722
PcsI WCGNNNNNNNCGW 3 cut(s) 237, 269, 884
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 1 cut(s) 756
Pfl23II CGTACG 1 cut(s) 381
PfoI TCCNGGA 1 cut(s) 564
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 8 cut(s) 21, 247, 250, 297, 312, 321, 394, 683
PleI GAGTC 3 cut(s) 38, 176, 828
PpsI GAGTC 3 cut(s) 38, 176, 828
PpuMI RGGWCCY 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspLI CGTACG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 388, 512, 513
PspPI GGNCC 6 cut(s) 181, 193, 211, 511, 624, 869
PspPPI RGGWCCY 1 cut(s) 511
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 2 cut(s) 383, 497
RsaNI GTAC 2 cut(s) 382, 496
RseI CAYNNNNRTG 2 cut(s) 410, 596
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 80, 725
SatI GCNGC 8 cut(s) 20, 246, 249, 296, 311, 320, 393, 682
Sau3AI GATC 1 cut(s) 875
Sau96I GGNCC 6 cut(s) 181, 193, 211, 511, 624, 869
SchI GAGTC 3 cut(s) 39, 177, 829
ScrFI CCNGG 5 cut(s) 191, 566, 584, 622, 738
SduI GDGCHC 2 cut(s) 336, 348
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 2 cut(s) 246, 397
SinI GGWCC 2 cut(s) 211, 511
SmiMI CAYNNNNRTG 2 cut(s) 410, 596
Sse9I AATT 3 cut(s) 110, 523, 694
SseBI AGGCCT 1 cut(s) 722
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 5 cut(s) 189, 564, 582, 620, 736
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 273, 595, 745, 794
TaiI ACGT 2 cut(s) 480, 858
TaqI TCGA 4 cut(s) 336, 464, 527, 878
TasI AATT 3 cut(s) 110, 523, 694
TauI GCSGC 4 cut(s) 313, 322, 395, 684
TfiI GAWTC 1 cut(s) 756
Tru1I TTAA 2 cut(s) 80, 725
Tru9I TTAA 2 cut(s) 80, 725
TscAI CASTG 1 cut(s) 512
TseI GCWGC 4 cut(s) 19, 245, 248, 295
TspDTI ATGAA 3 cut(s) 103, 394, 449
TspRI CASTG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 211, 511
XapI RAATTY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.