Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008818

Physical Location & Seq

Genomic Coordinates Reverse (-)

23629151 .. 23630894

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTCGGACTAGGTTTTTGCACAAAAGCGGGGTTTGAACAAGATTCAGCCCACGAAATTGAACGACTTCTTAACGTTGAATTGTGTGGATATCTGCAGGTTTACTTGCATACTGCTCCATTGTGCCACATTGGTGGGTTGTCATCTGCCCTGGCAATGCTAATGATTGGAGCACGCCATGTCCTGATGCCCAAGTTTGCGGCTAAATCCGCCCTCGAAGCCATTCAGCGACATAGCGTGACTTCTCTGATCACCGTTCCTGCAATGATGGCTGATTTGGTTTCTAAATTCAGGGGGAAGGAAACATGGAAAGGGAGGGATAGTGTGAAGAAGATATTGAATGGAGGTGGAGGCTTGTCAATTGAGCTGACCAAAGCTGCCATTAAATTGTTCTCACGAGCTAAGCTTCTCTCAGCTTATGGAATGACGGAGACATGCTCGTCATTAACCTTCATGACTCTGTATGATCCAAGCGTTGACAACTCCGGCGGTCCTCCCCGGTTGAATGATGAACGAAAACTGCATTCAGCTCATGAAGAAAGGGGTGTTTGTGTTGGGAAGCCGGCTCCTCATGTGGAACTAAAGATCTCGGTCGATGGCTCCTCTCATGTGGGAAGGATCTTAACTAGAGGTCAACATGTGATGCTCAGATATTGGCACGGAAGTCCACCAGATGAGTCAGTTTCCGGCAATGAAGTATGGTTTGACACCGGCGACGTTGGATCCGTTGATGACTCTGGCAATGTGTGGCTAATCGGACGAGCAAACGGTCGGATCAAGAGCGGAGGGGAGAACATTTACCCTGAAGAGGTGGAGAGAACCTTATTACAACATCCAGGGGTAACCGGCGTTGTTGTCGTCGGAATTCCGGATTCTCGTCTCACCGAGATGGTTGTTGCGTGTGTTCAAATAAGAGAAGATTGGCAGTGGATGAATACAACCATCAAACACTCAGTCTCAAAACAAATGCCACACATCTCCAGTGAGATTCTTTGTCAATATTGTAAACAAAAGAATTTGACGGGGTTTAAGATACCAAAAATATTCATTTTATGGAAGAAGCCGTTTCCGGCGACTACGACCGGATCGATCAGAAGAGACCAAGTCCGGGGAGAAGCTGTATTTCATCTGCAACATTTGAATAGCAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0031090 GO:0031903 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

385

Amino Acids

42.24

Weight (kDa)

8.82

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	33 - 219	4.4e-29	AMP-binding enzyme
AMP-binding_C	PF13193	270 - 326	1.4e-07	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30520 AT1G30520 AT1G30520 AT1G30520
fragaria_vesca	FvH4_3g10160 FvH4_3g10160
malus_domestica	MD10G1252900.v1.1
prunus_persica	Prupe.4G090600_v2.0.a1 Prupe.4G090600_v2.0.a1
pyrus_communis	pycom10g20860
rosa_chinensis	RchiOBHm_Chr5g0016071
rosa_laevigata	RLG00000032238
rosa_multiflora	Rmu_sc0000299.1_g000013 Rmu_sc0015959.1_g000017 Rmu_sc0027914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060590
rosa_rugosa	Rorug05G0031000
rosa_samantha	Rh1BG123700 Rh5AG124300 Rh5BG123400 Rh5CG135000 Rh5DG122700
rosa_wichuraiana	Rw5G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	783
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	5 cut(s)	29, 200, 210, 489, 783
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	6 cut(s)	461, 626, 717, 730, 782, 1093
AcsI	RAATTY	3 cut(s)	287, 864, 1015
AcuI	CTGAAG	1 cut(s)	825
AfiI	CCNNNNNNNGG	2 cut(s)	808, 1108
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	7 cut(s)	38, 62, 80, 340, 505, 908, 1141
AjnI	CCWGG	2 cut(s)	150, 835
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	7 cut(s)	367, 377, 401, 406, 416, 530, 1118
AluI	AGCT	7 cut(s)	367, 377, 401, 406, 416, 530, 1118
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	4 cut(s)	425, 884, 961, 1092
AlwI	GGATC	6 cut(s)	461, 626, 717, 730, 782, 1093
Aor13HI	TCCGGA	1 cut(s)	868
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	3 cut(s)	287, 864, 1015
ArsI	GACNNNNNNTTYG	3 cut(s)	32, 939, 971
Asp700I	GAANNNNTTC	2 cut(s)	66, 222
AspS9I	GGNCC	1 cut(s)	491
AsuC2I	CCSGG	2 cut(s)	499, 1109
AsuHPI	GGTGA	2 cut(s)	244, 874
AvaII	GGWCC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	722
BauI	CACGAG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	4 cut(s)	262, 590, 883, 950
BceAI	ACGGC	1 cut(s)	1048
BciT130I	CCWGG	2 cut(s)	152, 837
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	2 cut(s)	499, 1109
BcoDI	GTCTC	4 cut(s)	425, 884, 961, 1092
BfaI	CTAG	2 cut(s)	11, 627
BfmI	CTRYAG	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	2 cut(s)	201, 378
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	2 cut(s)	202, 379
Bme1390I	CCNGG	4 cut(s)	152, 499, 837, 1109
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	567, 601, 724
BmrFI	CCNGG	4 cut(s)	152, 499, 837, 1109
BmsI	GCATC	2 cut(s)	177, 633
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpmI	CTGGAG	1 cut(s)	964
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuMI	CCSGG	2 cut(s)	499, 1109
Bsa29I	ATCGAT	1 cut(s)	1088
BsaI	GGTCTC	1 cut(s)	1092
BsaJI	CCNNGG	4 cut(s)	150, 497, 836, 1108
BsaWI	WCCGGW	2 cut(s)	868, 1082
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 1104, 1134
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 1108
Bse118I	RCCGGY	3 cut(s)	562, 710, 845
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	4 cut(s)	162, 270, 697, 748
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	152, 837
BseCI	ATCGAT	1 cut(s)	1088
BseDI	CCNNGG	4 cut(s)	150, 497, 836, 1108
BseGI	GGATG	2 cut(s)	832, 936
BseLI	CCNNNNNNNGG	2 cut(s)	808, 1108
BseMI	GCAATG	4 cut(s)	162, 270, 697, 748
BseMII	CTCAG	3 cut(s)	426, 661, 966
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	2 cut(s)	558, 592
BseXI	GCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	3 cut(s)	594, 772, 1083
BshVI	ATCGAT	1 cut(s)	1088
BsiEI	CGRYCG	3 cut(s)	594, 772, 1083
BsiHKAI	GWGCWC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	808, 1108
BsmAI	GTCTC	4 cut(s)	425, 884, 961, 1092
BsmBI	CGTCTC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	1092
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	5 cut(s)	29, 200, 210, 489, 783
BspCNI	CTCAG	3 cut(s)	425, 660, 965
BspDI	ATCGAT	1 cut(s)	1088
BspEI	TCCGGA	1 cut(s)	868
BspHI	TCATGA	2 cut(s)	453, 532
BspLI	GGNNCC	3 cut(s)	567, 601, 724
BspMAI	CTGCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	6 cut(s)	461, 626, 717, 730, 782, 1093
BspTNI	GGTCTC	1 cut(s)	1092
BsrBI	CCGCTC	1 cut(s)	783
BsrDI	GCAATG	4 cut(s)	162, 270, 697, 748
BsrFI	RCCGGY	3 cut(s)	562, 710, 845
BsrI	ACTGG	1 cut(s)	981
BssAI	RCCGGY	3 cut(s)	562, 710, 845
BssECI	CCNNGG	4 cut(s)	150, 497, 836, 1108
BssMI	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	152, 837
Bst4CI	ACNGT	2 cut(s)	256, 770
Bst6I	CTCTTC	2 cut(s)	801, 1090
BstC8I	GCNNGC	2 cut(s)	175, 564
BstDEI	CTNAG	4 cut(s)	402, 412, 647, 952
BstEII	GGTNACC	1 cut(s)	841
BstF5I	GGATG	2 cut(s)	832, 936
BstKTI	GATC	8 cut(s)	252, 469, 588, 621, 725, 777, 1088, 1092
BstMAI	GTCTC	4 cut(s)	425, 884, 961, 1092
BstMBI	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
BstMCI	CGRYCG	3 cut(s)	594, 772, 1083
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 269
BstNI	CCWGG	2 cut(s)	152, 837
BstNSI	RCATGY	2 cut(s)	438, 641
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	4 cut(s)	150, 497, 835, 1107
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	3 cut(s)	585, 618, 722
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	3 cut(s)	585, 618, 722
Bsu15I	ATCGAT	1 cut(s)	1088
BsuTUI	ATCGAT	1 cut(s)	1088
BtsCI	GGATG	2 cut(s)	832, 936
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	2 cut(s)	932, 988
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	175, 564
CciI	TCATGA	2 cut(s)	453, 532
Cfr10I	RCCGGY	3 cut(s)	562, 710, 845
Cfr13I	GGNCC	1 cut(s)	491
ClaI	ATCGAT	1 cut(s)	1088
CviAII	CATG	8 cut(s)	179, 306, 435, 454, 533, 572, 608, 638
DdeI	CTNAG	4 cut(s)	402, 412, 647, 952
DpnI	GATC	8 cut(s)	251, 468, 587, 620, 724, 776, 1087, 1091
DpnII	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	801, 1090
EarI	CTCTTC	2 cut(s)	801, 1090
EciI	GGCGGA	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	1092
Eco32I	GATATC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	841
EcoO65I	GGTNACC	1 cut(s)	841
EcoRI	GAATTC	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	150, 835
EcoRV	GATATC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	8 cut(s)	182, 309, 438, 457, 536, 575, 611, 641
FatI	CATG	8 cut(s)	178, 305, 434, 453, 532, 571, 607, 637
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	201, 378
FokI	GGATG	2 cut(s)	819, 943
Fsp4HI	GCNGC	2 cut(s)	201, 378
FspBI	CTAG	2 cut(s)	11, 627
GluI	GCNGC	2 cut(s)	201, 378
GsuI	CTGGAG	1 cut(s)	964
Hin1II	CATG	8 cut(s)	182, 309, 438, 457, 536, 575, 611, 641
HincII	GTYRAC	2 cut(s)	478, 635
HindII	GTYRAC	2 cut(s)	478, 635
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	6 cut(s)	44, 457, 677, 734, 872, 988
HphI	GGTGA	2 cut(s)	244, 874
Hpy166II	GTNNAC	5 cut(s)	103, 478, 635, 668, 1007
Hpy188I	TCNGA	7 cut(s)	8, 249, 650, 758, 774, 863, 1094
Hpy188III	TCNNGA	6 cut(s)	184, 396, 454, 533, 778, 869
Hpy8I	GTNNAC	5 cut(s)	103, 478, 635, 668, 1007
Hpy99I	CGWCG	2 cut(s)	719, 863
HpyAV	CCTTC	3 cut(s)	292, 460, 609
HpyCH4III	ACNGT	2 cut(s)	256, 770
HpyCH4IV	ACGT	2 cut(s)	75, 717
HpyCH4V	TGCA	6 cut(s)	21, 97, 109, 263, 523, 1132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 269
HpyF3I	CTNAG	4 cut(s)	402, 412, 647, 952
HpySE526I	ACGT	2 cut(s)	75, 717
Hsp92II	CATG	8 cut(s)	182, 309, 438, 457, 536, 575, 611, 641
Kpn2I	TCCGGA	1 cut(s)	868
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
LmnI	GCTCC	4 cut(s)	121, 170, 571, 605
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	177, 633
MaeI	CTAG	2 cut(s)	11, 627
MaeII	ACGT	2 cut(s)	75, 717
MaeIII	GTNAC	2 cut(s)	238, 841
MalI	GATC	8 cut(s)	251, 468, 587, 620, 724, 776, 1087, 1091
MbiI	CCGCTC	1 cut(s)	783
MboI	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
MboII	GAAGA	7 cut(s)	340, 343, 548, 818, 929, 1069, 1107
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	3 cut(s)	585, 618, 722
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	7 cut(s)	57, 80, 287, 360, 386, 864, 1015
MlyI	GAGTC	3 cut(s)	451, 686, 728
MmeI	TCCRAC	3 cut(s)	700, 752, 841
MroI	TCCGGA	1 cut(s)	868
MroNI	GCCGGC	1 cut(s)	562
MroXI	GAANNNNTTC	2 cut(s)	66, 222
MseI	TTAA	5 cut(s)	72, 384, 446, 623, 1029
MslI	CAYNNNNRTG	2 cut(s)	132, 887
MspR9I	CCNGG	4 cut(s)	152, 499, 837, 1109
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	2 cut(s)	152, 837
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 269
NaeI	GCCGGC	1 cut(s)	564
NciI	CCSGG	2 cut(s)	499, 1109
NdeII	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
NgoMIV	GCCGGC	1 cut(s)	562
NlaIII	CATG	8 cut(s)	182, 309, 438, 457, 536, 575, 611, 641
NlaIV	GGNNCC	3 cut(s)	567, 601, 724
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	2 cut(s)	438, 641
OliI	CACNNNNGTG	1 cut(s)	132
PagI	TCATGA	2 cut(s)	453, 532
PciI	ACATGT	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	2 cut(s)	723, 1085
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	564
PdmI	GAANNNNTTC	2 cut(s)	66, 222
PfeI	GAWTC	3 cut(s)	44, 872, 988
PflFI	GACNNNGTC	1 cut(s)	1103
PkrI	GCNGC	2 cut(s)	202, 379
PleI	GAGTC	3 cut(s)	451, 685, 728
PpsI	GAGTC	3 cut(s)	451, 685, 728
PscI	ACATGT	1 cut(s)	637
Psp1406I	AACGTT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	150, 835
PspEI	GGTNACC	1 cut(s)	841
PspGI	CCWGG	2 cut(s)	150, 835
PspN4I	GGNNCC	3 cut(s)	567, 601, 724
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	3 cut(s)	585, 618, 722
PsyI	GACNNNGTC	1 cut(s)	1103
RseI	CAYNNNNRTG	2 cut(s)	132, 887
SaqAI	TTAA	5 cut(s)	72, 384, 446, 623, 1029
SatI	GCNGC	2 cut(s)	201, 378
Sau3AI	GATC	8 cut(s)	249, 466, 585, 618, 722, 774, 1085, 1089
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	3 cut(s)	451, 686, 728
ScrFI	CCNGG	4 cut(s)	152, 499, 837, 1109
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	177, 633
SfcI	CTRYAG	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	132, 887
Sse9I	AATT	7 cut(s)	57, 80, 287, 360, 386, 864, 1015
SsiI	CCGC	5 cut(s)	29, 200, 210, 489, 783
SspI	AATATT	2 cut(s)	1001, 1044
SspMI	CTAG	2 cut(s)	11, 627
StyD4I	CCNGG	4 cut(s)	150, 497, 835, 1107
TaaI	ACNGT	2 cut(s)	256, 770
TaiI	ACGT	2 cut(s)	78, 720
TaqI	TCGA	3 cut(s)	216, 594, 1088
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	7 cut(s)	57, 80, 287, 360, 386, 864, 1015
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	44, 872, 988
Tru1I	TTAA	5 cut(s)	72, 384, 446, 623, 1029
Tru9I	TTAA	5 cut(s)	72, 384, 446, 623, 1029
TscAI	CASTG	2 cut(s)	932, 988
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	7 cut(s)	442, 525, 549, 708, 947, 1036, 1115
TspGWI	ACGGA	3 cut(s)	443, 675, 715
TspRI	CASTG	2 cut(s)	932, 988
Tth111I	GACNNNGTC	1 cut(s)	1103
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	3 cut(s)	287, 864, 1015
XceI	RCATGY	2 cut(s)	438, 641
XmnI	GAANNNNTTC	2 cut(s)	66, 222
XspI	CTAG	2 cut(s)	11, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.