Rh1BG123700

2-succinylbenzoate--CoA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
20901443 .. 20904341
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG123700.1

Sequence Viewer

Length: 1302 bp
ATGGGTACTTACTCAGACGCCCACATTTGCCACTGCCTGAGCCTCCTATCCACTCTCCGGCGCAACTCCGTGGTCACCGTCGCCGGAAACCGGCGAAAGAGCGGCGAGGAGTTCGTGGACGGCGTCATGGGTCTGGCCCATGGCCTGCTCCAACTGAACCTCCAGTCCGGTGACGTCGTCTCCATTGCTGCATTCAACAGTGAGTTGTATTTGGAGTGGTTACTTGCAATTGCATATGTTGGTGCTATAGCTGCTCCTCTTAATTACAGATGGGTGTATTTGCATACTGCTCCACTTTGCCACATTGGTGGTTTGTCATCAGCACTAGCAATGCTTACGGTTGGAGCATGCCATGTATTTATACCTAAATTCGATGCTAAATCTGCCCTTGAAGCCATAGGACAACATAATGTGACTTCTCTAATCACCGTCCCTGCCATGATGGCCGATTTAGTTTCTAAATTCAGGGGAAATGATACATCTAAATGCATAGAGAATGTCAAGAAGATATTAAATGGAGGTGGAGGTTTGTCAATTGCGCTCACCAAAGCTGCCACCAAGTTGTTCCCAAAAGCTAAGCTTCTCTCAGCTTATGGGATGACGGAAACGTGCTCTTCACTGACCTTCGTGACCCTGTATGACCCGAAAGTCGATCAAAGAAAATCGCACTCAGTTGATCAAACAAGAGGTATTTGTGTTGGCAAGCCTGCTCCTCATGTAGAGTTGAAGATCTGCGCCGATGGATCTTCTGATGTGGGGAGGATTTTAACTAGAGGACCACATGTGATGCTTAGATACCGGAATGGAAGTCTGGCAAATGCAGCTGCACAGTCCAGCAATGGAGTTTGGCTTGACACAGGTGACATTGGATTCATTGATGACTATGGTAACGTATGGCTTATAGGACGAGCAAATGGTCGAATCAAGAGTGGAGGGGAGAACATTTACCCTGAAGAGGTAGAGAGAACCCTATTACGACATCCAGGAGTTACTGGCGTTGTTGTTGTGGGTATTCCAGAAGCTCGTCTCACGGAAATGGTTGTTGCTTGTGTTCAAATAAGAGGAAACTGGCAATGGGTGAATACAAGTACCAAAGACTCAGTTGCAAATCCAATGCTTCACATTTCCAGTGAGATCCTTTTGCGATACTGTAAAGAAAAGAATTTGACTGGGTTTAAAATACCAAAGAAGTTCCTTGTATGGAAGAAGTCATTTCCGCTCACAACGACTGGAAAAATAAGAAGAGACCAAATTCGGGGAGAAGCTATGTTGCATCTGCAATATTTGATTAGTCATTTATGA

Protein Analysis

433

Amino Acids

47.16

Weight (kDa)

9.25

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 23 - 91 7e-09 AMP-binding enzyme
AMP-binding PF00501 92 - 266 1.2e-28 AMP-binding enzyme
AMP-binding_C PF13193 319 - 412 4e-08 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AatII GACGTC 1 cut(s) 177
AccBSI CCGCTC 2 cut(s) 102, 1219
AciI CCGC 2 cut(s) 102, 1217
AclWI GGATC 2 cut(s) 751, 1129
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 4 cut(s) 368, 461, 1162, 1251
AcuI CTGAAG 1 cut(s) 972
AcyI GRCGYC 3 cut(s) 18, 123, 174
AfaI GTAC 2 cut(s) 7, 1090
AfiI CCNNNNNNNGG 4 cut(s) 57, 90, 955, 1255
AflIII ACRYGT 1 cut(s) 781
AgsI TTSAA 4 cut(s) 196, 392, 727, 1055
AjnI CCWGG 1 cut(s) 982
AleI CACNNNNGTG 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 8 cut(s) 251, 551, 575, 580, 590, 824, 1022, 1265
AluI AGCT 8 cut(s) 251, 551, 575, 580, 590, 824, 1022, 1265
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 3 cut(s) 184, 1031, 1239
AlwI GGATC 2 cut(s) 751, 1129
AoxI GGCC 3 cut(s) 135, 142, 444
ApeKI GCWGC 5 cut(s) 188, 251, 551, 821, 824
ApoI RAATTY 4 cut(s) 368, 461, 1162, 1251
AspLEI GCGC 3 cut(s) 63, 541, 737
AspS9I GGNCC 2 cut(s) 136, 776
AsuHPI GGTGA 6 cut(s) 67, 182, 418, 535, 872, 1090
AvaII GGWCC 1 cut(s) 776
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 5 cut(s) 175, 238, 538, 811, 833
BccI CCATC 3 cut(s) 264, 436, 734
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 984
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 184, 1031, 1239
BfaI CTAG 2 cut(s) 326, 771
BfmI CTRYAG 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 443
BglII AGATCT 1 cut(s) 729
BisI GCNGC 6 cut(s) 103, 189, 252, 552, 822, 825
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 6 cut(s) 104, 190, 253, 553, 823, 826
Bme1390I CCNGG 1 cut(s) 984
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 2 cut(s) 136, 776
BmrFI CCNGG 1 cut(s) 984
BmrI ACTGGG 1 cut(s) 1179
BmsI GCATC 3 cut(s) 364, 777, 1282
BmuI ACTGGG 1 cut(s) 1179
BpmI CTGGAG 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 576
BsaHI GRCGYC 3 cut(s) 18, 123, 174
BsaI GGTCTC 1 cut(s) 1239
BsaJI CCNNGG 2 cut(s) 69, 139
BsaWI WCCGGW 2 cut(s) 167, 798
BsaXI ACNNNNNCTCC 4 cut(s) 144, 164, 174, 194
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 90, 955, 1255
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 6 cut(s) 163, 997, 1073, 1128, 1174, 1234
Bse3DI GCAATG 4 cut(s) 183, 336, 844, 1079
BseBI CCWGG 1 cut(s) 984
BseDI CCNNGG 2 cut(s) 69, 139
BseGI GGATG 2 cut(s) 603, 979
BseLI CCNNNNNNNGG 4 cut(s) 57, 90, 955, 1255
BseMI GCAATG 4 cut(s) 183, 336, 844, 1079
BseMII CTCAG 5 cut(s) 27, 29, 600, 684, 1113
BseNI ACTGG 6 cut(s) 163, 997, 1073, 1128, 1174, 1234
BseRI GAGGAG 3 cut(s) 122, 246, 702
BseXI GCAGC 5 cut(s) 175, 238, 538, 811, 833
BsgI GTGCAG 1 cut(s) 810
BshFI GGCC 3 cut(s) 137, 144, 446
BsiHKAI GWGCWC 1 cut(s) 614
BsiSI CCGG 5 cut(s) 58, 84, 91, 168, 799
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 4 cut(s) 57, 90, 955, 1255
BsmAI GTCTC 3 cut(s) 184, 1031, 1239
BsmBI CGTCTC 2 cut(s) 184, 1031
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 3 cut(s) 137, 144, 446
Bso31I GGTCTC 1 cut(s) 1239
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 5 cut(s) 652, 676, 729, 743, 1134
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 2 cut(s) 102, 1217
BspANI GGCC 3 cut(s) 137, 144, 446
BspCNI CTCAG 5 cut(s) 26, 30, 599, 683, 1112
BspPI GGATC 2 cut(s) 751, 1129
BspQI GCTCTTC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 1239
BsrBI CCGCTC 2 cut(s) 102, 1219
BsrDI GCAATG 4 cut(s) 183, 336, 844, 1079
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 6 cut(s) 163, 997, 1073, 1128, 1174, 1234
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 69, 139
BssMI GATC 5 cut(s) 652, 676, 729, 743, 1134
BssNI GRCGYC 3 cut(s) 18, 123, 174
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 984
Bst4CI ACNGT 6 cut(s) 79, 200, 340, 430, 831, 1151
Bst6I CTCTTC 3 cut(s) 619, 948, 1237
BstACI GRCGYC 3 cut(s) 18, 123, 174
BstC8I GCNNGC 4 cut(s) 146, 349, 704, 708
BstDEI CTNAG 7 cut(s) 13, 38, 576, 586, 670, 791, 1099
BstDSI CCRYGG 2 cut(s) 69, 139
BstEII GGTNACC 1 cut(s) 73
BstF5I GGATG 2 cut(s) 603, 979
BstHHI GCGC 3 cut(s) 63, 541, 737
BstKTI GATC 5 cut(s) 655, 679, 732, 746, 1137
BstMAI GTCTC 3 cut(s) 184, 1031, 1239
BstMBI GATC 5 cut(s) 652, 676, 729, 743, 1134
BstMWI GCNNNNNNNGC 5 cut(s) 251, 383, 392, 443, 821
BstNI CCWGG 1 cut(s) 984
BstNSI RCATGY 2 cut(s) 351, 785
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 982
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 175, 238, 538, 811, 833
BstX2I RGATCY 3 cut(s) 729, 743, 1134
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 3 cut(s) 729, 743, 1134
BsuRI GGCC 3 cut(s) 137, 144, 446
BtgI CCRYGG 2 cut(s) 69, 139
BtsCI GGATG 2 cut(s) 603, 979
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 4 cut(s) 31, 205, 617, 1135
Cac8I GCNNGC 4 cut(s) 146, 349, 704, 708
CfoI GCGC 3 cut(s) 63, 541, 737
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 136, 776
CseI GACGC 2 cut(s) 26, 112
Csp6I GTAC 2 cut(s) 6, 1089
CviAII CATG 7 cut(s) 127, 140, 348, 353, 439, 716, 782
CviQI GTAC 2 cut(s) 6, 1089
DdeI CTNAG 7 cut(s) 13, 38, 576, 586, 670, 791, 1099
DpnI GATC 5 cut(s) 654, 678, 731, 745, 1136
DpnII GATC 5 cut(s) 652, 676, 729, 743, 1134
DraI TTTAAA 1 cut(s) 1177
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 619, 948, 1237
EarI CTCTTC 3 cut(s) 619, 948, 1237
Eco130I CCWWGG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 1239
Eco47I GGWCC 1 cut(s) 776
Eco57I CTGAAG 1 cut(s) 972
Eco91I GGTNACC 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 982
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 2 cut(s) 184, 1031
FaeI CATG 7 cut(s) 130, 143, 351, 356, 442, 719, 785
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 416
FatI CATG 7 cut(s) 126, 139, 347, 352, 438, 715, 781
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 6 cut(s) 103, 189, 252, 552, 822, 825
FokI GGATG 2 cut(s) 610, 966
Fsp4HI GCNGC 6 cut(s) 103, 189, 252, 552, 822, 825
FspBI CTAG 2 cut(s) 326, 771
GlaI GCGC 3 cut(s) 62, 540, 736
GluI GCNGC 6 cut(s) 103, 189, 252, 552, 822, 825
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 3 cut(s) 137, 144, 446
HapII CCGG 5 cut(s) 58, 84, 91, 168, 799
HgaI GACGC 2 cut(s) 26, 112
HhaI GCGC 3 cut(s) 63, 541, 737
Hin1I GRCGYC 3 cut(s) 18, 123, 174
Hin1II CATG 7 cut(s) 130, 143, 351, 356, 442, 719, 785
Hin6I GCGC 3 cut(s) 61, 539, 735
HinP1I GCGC 3 cut(s) 61, 539, 735
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 870, 921, 1097
HpaII CCGG 5 cut(s) 58, 84, 91, 168, 799
HphI GGTGA 6 cut(s) 67, 182, 418, 535, 872, 1090
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 16, 751
Hpy188III TCNNGA 4 cut(s) 502, 628, 925, 1016
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 83, 179
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 6 cut(s) 79, 200, 340, 430, 831, 1151
HpyCH4IV ACGT 3 cut(s) 174, 608, 891
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 383, 392, 443, 821
HpyF3I CTNAG 7 cut(s) 13, 38, 576, 586, 670, 791, 1099
HpySE526I ACGT 3 cut(s) 174, 608, 891
Hsp92I GRCGYC 3 cut(s) 18, 123, 174
Hsp92II CATG 7 cut(s) 130, 143, 351, 356, 442, 719, 785
HspAI GCGC 3 cut(s) 61, 539, 735
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 652, 676, 729, 743, 1134
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 5 cut(s) 153, 259, 295, 344, 715
Lsp1109I GCAGC 5 cut(s) 175, 238, 538, 811, 833
LweI GCATC 3 cut(s) 364, 777, 1282
MaeI CTAG 2 cut(s) 326, 771
MaeII ACGT 3 cut(s) 174, 608, 891
MaeIII GTNAC 8 cut(s) 73, 170, 219, 412, 628, 860, 887, 988
MalI GATC 5 cut(s) 654, 678, 731, 745, 1136
MbiI CCGCTC 2 cut(s) 102, 1219
MboI GATC 5 cut(s) 652, 676, 729, 743, 1134
MboII GAAGA 7 cut(s) 517, 606, 738, 739, 965, 1216, 1254
MfeI CAATTG 2 cut(s) 228, 534
MflI RGATCY 3 cut(s) 729, 743, 1134
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 7 cut(s) 228, 262, 368, 461, 534, 1162, 1251
MlyI GAGTC 1 cut(s) 1091
MmeI TCCRAC 2 cut(s) 175, 322
Mph1103I ATGCAT 1 cut(s) 491
MseI TTAA 4 cut(s) 261, 512, 767, 1176
MslI CAYNNNNRTG 3 cut(s) 306, 484, 1034
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 5 cut(s) 58, 84, 91, 168, 799
MspR9I CCNGG 1 cut(s) 984
MunI CAATTG 2 cut(s) 228, 534
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 1 cut(s) 984
MwoI GCNNNNNNNGC 5 cut(s) 251, 383, 392, 443, 821
NcoI CCATGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 235
NdeII GATC 5 cut(s) 652, 676, 729, 743, 1134
NlaIII CATG 7 cut(s) 130, 143, 351, 356, 442, 719, 785
NmuCI GTSAC 5 cut(s) 73, 170, 412, 628, 860
NsiI ATGCAT 1 cut(s) 491
NspI RCATGY 2 cut(s) 351, 785
OliI CACNNNNGTG 1 cut(s) 306
PaeI GCATGC 1 cut(s) 351
PciI ACATGT 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 870, 921
PflFI GACNNNGTC 2 cut(s) 122, 176
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 6 cut(s) 104, 190, 253, 553, 823, 826
PleI GAGTC 1 cut(s) 1091
PpsI GAGTC 1 cut(s) 1091
PscI ACATGT 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 982
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 982
PspPI GGNCC 2 cut(s) 136, 776
PsuI RGATCY 3 cut(s) 729, 743, 1134
PsyI GACNNNGTC 2 cut(s) 122, 176
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 7, 1090
RsaNI GTAC 2 cut(s) 6, 1089
RseI CAYNNNNRTG 3 cut(s) 306, 484, 1034
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 4 cut(s) 261, 512, 767, 1176
SatI GCNGC 6 cut(s) 103, 189, 252, 552, 822, 825
Sau3AI GATC 5 cut(s) 652, 676, 729, 743, 1134
Sau96I GGNCC 2 cut(s) 136, 776
SchI GAGTC 1 cut(s) 1091
ScrFI CCNGG 1 cut(s) 984
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 3 cut(s) 364, 777, 1282
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 3 cut(s) 306, 484, 1034
SphI GCATGC 1 cut(s) 351
Sse9I AATT 7 cut(s) 228, 262, 368, 461, 534, 1162, 1251
SsiI CCGC 2 cut(s) 102, 1217
SspI AATATT 1 cut(s) 1283
SspMI CTAG 2 cut(s) 326, 771
StyD4I CCNGG 1 cut(s) 982
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 6 cut(s) 79, 200, 340, 430, 831, 1151
TaiI ACGT 3 cut(s) 177, 611, 894
TaqI TCGA 3 cut(s) 372, 651, 919
TasI AATT 7 cut(s) 228, 262, 368, 461, 534, 1162, 1251
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 870, 921
Tru1I TTAA 4 cut(s) 261, 512, 767, 1176
Tru9I TTAA 4 cut(s) 261, 512, 767, 1176
TscAI CASTG 4 cut(s) 38, 205, 624, 1135
TseFI GTSAC 5 cut(s) 73, 170, 412, 628, 860
TseI GCWGC 5 cut(s) 188, 251, 551, 821, 824
Tsp45I GTSAC 5 cut(s) 73, 170, 412, 628, 860
TspDTI ATGAA 1 cut(s) 862
TspGWI ACGGA 3 cut(s) 58, 617, 1046
TspRI CASTG 4 cut(s) 38, 205, 624, 1135
Tth111I GACNNNGTC 2 cut(s) 122, 176
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 4 cut(s) 368, 461, 1162, 1251
XceI RCATGY 2 cut(s) 351, 785
XspI CTAG 2 cut(s) 326, 771
ZraI GACGTC 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.