pycom10g24930

U2 snRNP auxiliary factor large subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0020969
Physical Location & Seq
Forward (+)
26657408 .. 26658844
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGGGCTTAAATTTCCAACCTTTCCATGGTTTTGACCTCGTGAAGGATAATGATACAGGAAACTCTAAAGGATATGGATTCTGTGTTTATCAGTGCCAGAAAATGGCCATGCAGGTTGTTGACTTGAATCTTCTAGGAGCTGGAATGGCAACTATGGCGAGTGGTGAGACACCCACTAAGGTCCTATGCTTGACTGAGGCGATTACTGCTGATCAACTGGGTGACGATGAAGAGTATGTCGAAATATTAGAAGACATGAGGGATGAATGCAGCAAATTTGGAACTCTTGTGAATGTTGTTATTCCTCGTGCGGATCAAGGCGGAGAACAGATTCCAGGTGTTGGGAAGGTGTTCTTGGAATATACGGATATTGGGGGTTGCGCCAATGCGAAGAATGTACTCGGTGGGAGAAAATTCGGAGGTAACAGTCAATGCCGTTTACTATCCAGAAGAGAAATACTATATCAGGGACTACAGTGCATAAGAGTACTAAGCCCCCCCGGCCTAGGTTTTTATCGTTTTTGTTGCAATGTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

180

Amino Acids

19.53

Weight (kDa)

5.04

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60830 AT1G60830
pyrus_communis pycom10g24930
rosa_multiflora Rmu_co8118650.1_g000001 Rmu_sc0039049.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 2 cut(s) 103, 341
AciI CCGC 2 cut(s) 311, 321
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 10, 275, 413
AfaI GTAC 2 cut(s) 399, 489
AfiI CCNNNNNNNGG 5 cut(s) 26, 43, 103, 341, 506
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 321
AoxI GGCC 2 cut(s) 105, 502
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 3 cut(s) 10, 275, 413
Asp700I GAANNNNTTC 2 cut(s) 330, 350
AspA2I CCTAGG 1 cut(s) 505
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 176, 233
AvaII GGWCC 1 cut(s) 181
AvrII CCTAGG 1 cut(s) 505
BalI TGGCCA 1 cut(s) 107
BauI CACGAG 2 cut(s) 38, 306
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 282
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 134, 506
BfmI CTRYAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 501
BisI GCNGC 1 cut(s) 271
BlnI CCTAGG 1 cut(s) 505
BlsI GCNGC 1 cut(s) 272
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 2 cut(s) 336, 501
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 336, 501
BmrI ACTGGG 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 25, 499, 505
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 43, 103, 341, 506
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 25, 499, 505
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 5 cut(s) 26, 43, 103, 341, 506
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 107, 504
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 5 cut(s) 26, 43, 103, 341, 506
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 2 cut(s) 107, 504
Bsp143I GATC 2 cut(s) 211, 313
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 2 cut(s) 311, 321
BspANI GGCC 2 cut(s) 107, 504
BspCNI CTCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 535
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 25, 499, 505
BssMI GATC 2 cut(s) 211, 313
BssSI CACGAG 2 cut(s) 38, 306
BssT1I CCWWGG 2 cut(s) 25, 505
Bst2BI CACGAG 2 cut(s) 38, 306
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 428, 477
Bst6I CTCTTC 2 cut(s) 225, 445
BstDEI CTNAG 3 cut(s) 177, 195, 491
BstDSI CCRYGG 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 2 cut(s) 214, 316
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 211, 313
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 206, 501
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 334, 499
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 107, 504
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 98, 482
BveI ACCTGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 398, 488
CviAII CATG 3 cut(s) 26, 109, 256
CviJI RGCY 5 cut(s) 6, 107, 140, 495, 504
CviKI_1 RGCY 5 cut(s) 6, 107, 140, 495, 504
CviQI GTAC 2 cut(s) 398, 488
DdeI CTNAG 3 cut(s) 177, 195, 491
DpnI GATC 2 cut(s) 213, 315
DpnII GATC 2 cut(s) 211, 313
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 225, 445
EarI CTCTTC 2 cut(s) 225, 445
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 25, 505
Eco47I GGWCC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 25, 505
ErhI CCWWGG 2 cut(s) 25, 505
FaeI CATG 3 cut(s) 29, 112, 259
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 483
FatI CATG 3 cut(s) 25, 108, 255
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 2 cut(s) 134, 506
GlaI GCGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 107, 504
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 383
Hin1II CATG 3 cut(s) 29, 112, 259
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 3 cut(s) 78, 127, 331
HpaII CCGG 1 cut(s) 501
HphI GGTGA 2 cut(s) 176, 233
Hpy166II GTNNAC 2 cut(s) 121, 440
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 2 cut(s) 40, 447
Hpy8I GTNNAC 2 cut(s) 121, 440
HpyAV CCTTC 2 cut(s) 37, 340
HpyCH4III ACNGT 2 cut(s) 428, 477
HpyCH4V TGCA 4 cut(s) 112, 270, 480, 528
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 206, 501
HpyF3I CTNAG 3 cut(s) 177, 195, 491
Hsp92II CATG 3 cut(s) 29, 112, 259
HspAI GCGC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 313
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 2 cut(s) 134, 506
MaeIII GTNAC 2 cut(s) 221, 422
MalI GATC 2 cut(s) 213, 315
MboI GATC 2 cut(s) 211, 313
MboII GAAGA 5 cut(s) 122, 242, 263, 403, 462
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 3 cut(s) 10, 275, 413
MluNI TGGCCA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 5 cut(s) 47, 190, 252, 315, 413
Mox20I TGGCCA 1 cut(s) 107
MroXI GAANNNNTTC 2 cut(s) 330, 350
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 8
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 2 cut(s) 336, 501
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 206, 501
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 25
NdeII GATC 2 cut(s) 211, 313
NlaIII CATG 3 cut(s) 29, 112, 259
NmuCI GTSAC 1 cut(s) 221
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 2 cut(s) 330, 350
PfeI GAWTC 3 cut(s) 78, 127, 331
PflMI CCANNNNNTGG 2 cut(s) 103, 341
PkrI GCNGC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 399, 489
RsaNI GTAC 2 cut(s) 398, 488
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 211, 313
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 489
ScrFI CCNGG 2 cut(s) 336, 501
SetI ASST 9 cut(s) 22, 39, 117, 142, 183, 340, 351, 424, 511
SfcI CTRYAG 1 cut(s) 473
SinI GGWCC 1 cut(s) 181
Sse9I AATT 3 cut(s) 10, 275, 413
SsiI CCGC 2 cut(s) 311, 321
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 134, 506
StyD4I CCNGG 2 cut(s) 334, 499
StyI CCWWGG 2 cut(s) 25, 505
TaaI ACNGT 2 cut(s) 428, 477
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 10, 275, 413
TatI WGTACW 2 cut(s) 397, 487
TfiI GAWTC 3 cut(s) 78, 127, 331
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 98, 482
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 243, 279
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 98, 482
Van91I CCANNNNNTGG 2 cut(s) 103, 341
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 3 cut(s) 10, 275, 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmaJI CCTAGG 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 330, 350
XspI CTAG 2 cut(s) 134, 506
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.