pycom111g00720

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0014782
Physical Location & Seq
Forward (+)
501404 .. 503858
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1152 bp
ATGCTTCAAACTGGAGGATTAAACTTATATATTTCCAACTTGGGTTTTTCACATTGCAATGAATCCTTTGACCTTCCTTGTTTTAGTGGGAACAGAATTATCATAGTTCATAGTGCTCATTATCCTCAAAACTCAACCCAGTTTCTAAGGAATTTAATTCCTCTGTTTTTCTTTTCCAGCAGATCCGAGTTATTCTTACACCGGGCAGCAATGGAGTACTGGGACTTCGAGGACAGCGACCTTGCTGCTCTGGTGGGGTCCAGTATCTCACAACCCCAGATGGAGAATCGACCAGCTGAATCACTAGGATTGGAGGAGGACCCAATGAAGCTCTCATCGTCCGGAAGGCTTAGTGGTAGTAACAATGGAGGTGATAAACTGAAATTTCTATGCCTGGTCGACGGTTGCAGGGCGGACCTCAGCCGTTGTCGGGAATATCATCGGCGGCACAGAGTCTGCGACCTCCACTCCAAGGCCCCTGTTGTCGTCGTCAGGGGCGAACAGAAGCGATTCTGCCAGCAGTGCAGCAGATTCCATTCTCTGGTGGACTTTGACAAGGTGAAAAGAAGCTGCAGAAAACGTCTCAATGGACACAACCAGCGCCGGCGGAAACCTAAACCGGAATCCTTCTCCTTCAGTTCCCACTTCTTCTTCTCCACATACAAAGGTCCCAGGATCGTGCAATTTGGAAGTCCACGAGTATGTGCAACAACTAATGTGAGATGTATCTGGCCTGTTAAGGACAAAAAAGGAGCAGAATCCATGCGTTCTAACTACCACCACCAGTGGTTGTACGCAGCTGACGAACGAAGTCCTCCCAATTCCTTCAAAGGCGGAGGAGATAAACAATTTCTTTTCTTGCAAGCAAATGATCCTAAAGCCGCTGCAGGCAACCGAGCAGCCCCTCAAGCTTTCGTGTGCCAGCAGCAGAAGTTTCCAACAACCATTGCTGCTGCCTCACCAAAAAGCACTAAGGGTTGTGCCCTCTATCTTCTGTCATCTCATCCAACACAAAATCCAGTTAGTGGGCTAAACCACTTGGCTCAACCCACTGTCACCACAACTCATCCATGCTCACATAATGTGGAGGACAGGCCTGTAAATCCAGAAATGATGTTTCCAATGTGCCCTGATGGCTTTTGGGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

384

Amino Acids

43.21

Weight (kDa)

9.26

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 131 - 204 1.1e-29 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53760
malus_domestica MD09G1008900.v1.1 MD17G1001400.v1.1
prunus_persica Prupe.3G308100_v2.0.a1 Prupe.3G308100_v2.0.a1
pyrus_communis pycom111g00720 pycom17g00760
rosa_chinensis RchiOBHm_Chr2g0175901
rosa_laevigata RLG00000022362
rosa_multiflora Rmu_ssc0000114.1_g000004
rosa_roxburghii Rroxscaffold_2G00076970
rosa_rugosa Rorug02G0588300
rosa_samantha Rh2AG667600 Rh2BG679100 Rh2CG641900 Rh2DG692600
rosa_wichuraiana Rw2G054720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 541, 1025
AccI GTMKAC 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 5 cut(s) 413, 445, 607, 834, 882
AclWI GGATC 3 cut(s) 177, 683, 866
AcsI RAATTY 2 cut(s) 151, 383
AcuI CTGAAG 1 cut(s) 619
AfaI GTAC 2 cut(s) 218, 794
AfiI CCNNNNNNNGG 4 cut(s) 430, 472, 541, 1025
AgsI TTSAA 2 cut(s) 8, 829
AjnI CCWGG 2 cut(s) 393, 671
AluBI AGCT 5 cut(s) 296, 331, 570, 800, 911
AluI AGCT 5 cut(s) 296, 331, 570, 800, 911
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 3 cut(s) 177, 683, 866
AlwNI CAGNNNCTG 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 3 cut(s) 474, 731, 1094
ApoI RAATTY 2 cut(s) 151, 383
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 5 cut(s) 258, 319, 415, 475, 668
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 383, 571, 951, 1048
AvaII GGWCC 4 cut(s) 258, 319, 415, 668
BaeGI GKGCMC 2 cut(s) 985, 1130
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 419
BccI CCATC 2 cut(s) 274, 1127
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 2 cut(s) 395, 673
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 571, 885
BfoI RGCGCY 1 cut(s) 604
BglI GCCNNNNNGGC 1 cut(s) 1134
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 203, 395, 673
Bme18I GGWCC 4 cut(s) 258, 319, 415, 668
BmgT120I GGNCC 5 cut(s) 258, 319, 415, 475, 668
BmiI GGNNCC 4 cut(s) 259, 321, 477, 670
BmrFI CCNGG 3 cut(s) 203, 395, 673
BmrI ACTGGG 2 cut(s) 133, 229
BmuI ACTGGG 2 cut(s) 133, 229
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 471, 671
BsaWI WCCGGW 2 cut(s) 341, 619
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 472, 541, 1025
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 6 cut(s) 16, 139, 224, 261, 784, 1019
Bse3DI GCAATG 4 cut(s) 52, 64, 216, 945
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 395, 673
BseDI CCNNGG 2 cut(s) 471, 671
BseGI GGATG 2 cut(s) 1003, 1066
BseLI CCNNNNNNNGG 4 cut(s) 430, 472, 541, 1025
BseMI GCAATG 4 cut(s) 52, 64, 216, 945
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 6 cut(s) 16, 139, 224, 261, 784, 1019
BseRI GAGGAG 2 cut(s) 329, 852
BseSI GKGCMC 2 cut(s) 985, 1130
BsgI GTGCAG 1 cut(s) 544
BshFI GGCC 3 cut(s) 476, 733, 1096
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 4 cut(s) 202, 342, 604, 620
BslFI GGGAC 2 cut(s) 236, 654
BslI CCNNNNNNNGG 4 cut(s) 430, 472, 541, 1025
BsmAI GTCTC 1 cut(s) 587
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 236, 654
BsnI GGCC 3 cut(s) 476, 733, 1096
Bsp1286I GDGCHC 3 cut(s) 118, 985, 1130
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 3 cut(s) 182, 675, 871
BspACI CCGC 5 cut(s) 413, 445, 607, 834, 882
BspANI GGCC 3 cut(s) 476, 733, 1096
BspCNI CTCAG 1 cut(s) 432
BspEI TCCGGA 1 cut(s) 341
BspLI GGNNCC 4 cut(s) 259, 321, 477, 670
BspMAI CTGCAG 2 cut(s) 575, 889
BspPI GGATC 3 cut(s) 177, 683, 866
BsrDI GCAATG 4 cut(s) 52, 64, 216, 945
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 6 cut(s) 16, 139, 224, 261, 784, 1019
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 471, 671
BssMI GATC 3 cut(s) 182, 675, 871
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 2 cut(s) 395, 673
Bst4CI ACNGT 2 cut(s) 404, 1054
BstC8I GCNNGC 5 cut(s) 518, 605, 864, 889, 923
BstDEI CTNAG 4 cut(s) 146, 350, 419, 972
BstF5I GGATG 2 cut(s) 1003, 1066
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 3 cut(s) 185, 678, 874
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 3 cut(s) 182, 675, 871
BstMWI GCNNNNNNNGC 3 cut(s) 522, 908, 1134
BstNI CCWGG 2 cut(s) 395, 673
BstSCI CCNGG 3 cut(s) 201, 393, 671
BstSFI CTRYAG 2 cut(s) 571, 885
BstSLI GKGCMC 2 cut(s) 985, 1130
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 3 cut(s) 476, 733, 1096
BtsCI GGATG 2 cut(s) 1003, 1066
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 3 cut(s) 527, 791, 1050
Cac8I GCNNGC 5 cut(s) 518, 605, 864, 889, 923
CaiI CAGNNNCTG 1 cut(s) 456
CfoI GCGC 1 cut(s) 603
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 5 cut(s) 258, 319, 415, 475, 668
Csp6I GTAC 2 cut(s) 217, 793
CviAII CATG 2 cut(s) 763, 1071
CviQI GTAC 2 cut(s) 217, 793
DdeI CTNAG 4 cut(s) 146, 350, 419, 972
DpnI GATC 3 cut(s) 184, 677, 873
DpnII GATC 3 cut(s) 182, 675, 871
EciI GGCGGA 3 cut(s) 428, 622, 849
Eco130I CCWWGG 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 1096
Eco47I GGWCC 4 cut(s) 258, 319, 415, 668
Eco57I CTGAAG 1 cut(s) 619
EcoO109I RGGNCCY 3 cut(s) 319, 475, 668
EcoRII CCWGG 2 cut(s) 393, 671
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 2 cut(s) 766, 1074
FaqI GGGAC 2 cut(s) 236, 654
FatI CATG 2 cut(s) 762, 1070
FblI GTMKAC 1 cut(s) 399
FokI GGATG 2 cut(s) 990, 1053
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 3 cut(s) 476, 733, 1096
HapII CCGG 4 cut(s) 202, 342, 604, 620
HhaI GCGC 1 cut(s) 603
Hin1II CATG 2 cut(s) 766, 1074
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 8 cut(s) 62, 286, 299, 453, 510, 531, 623, 758
HpaII CCGG 4 cut(s) 202, 342, 604, 620
HphI GGTGA 4 cut(s) 383, 571, 951, 1048
Hpy166II GTNNAC 3 cut(s) 400, 547, 695
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 342, 431, 1106
Hpy8I GTNNAC 3 cut(s) 400, 547, 695
Hpy99I CGWCG 2 cut(s) 404, 491
HpyAV CCTTC 5 cut(s) 83, 339, 637, 643, 835
HpyCH4III ACNGT 2 cut(s) 404, 1054
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 8 cut(s) 57, 408, 525, 573, 682, 707, 862, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 522, 908, 1134
HpyF3I CTNAG 4 cut(s) 146, 350, 419, 972
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 2 cut(s) 766, 1074
HspAI GCGC 1 cut(s) 601
Kpn2I TCCGGA 1 cut(s) 341
KroI GCCGGC 1 cut(s) 603
KroNI GCCGGC 1 cut(s) 605
Kzo9I GATC 3 cut(s) 182, 675, 871
LmnI GCTCC 1 cut(s) 752
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 359, 1054
MalI GATC 3 cut(s) 184, 677, 873
MboI GATC 3 cut(s) 182, 675, 871
MboII GAAGA 3 cut(s) 640, 643, 983
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 3 cut(s) 118, 985, 1130
MluCI AATT 7 cut(s) 96, 151, 156, 383, 683, 820, 848
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 3 cut(s) 60, 962, 1031
MreI CGCCGGCG 1 cut(s) 603
MroI TCCGGA 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 3 cut(s) 20, 155, 738
MslI CAYNNNNRTG 2 cut(s) 57, 700
MspA1I CMGCKG 3 cut(s) 296, 800, 884
MspI CCGG 4 cut(s) 202, 342, 604, 620
MspR9I CCNGG 3 cut(s) 203, 395, 673
MvaI CCWGG 2 cut(s) 395, 673
MwoI GCNNNNNNNGC 3 cut(s) 522, 908, 1134
NaeI GCCGGC 1 cut(s) 605
NciI CCSGG 1 cut(s) 203
NdeII GATC 3 cut(s) 182, 675, 871
NgoMIV GCCGGC 1 cut(s) 603
NlaIII CATG 2 cut(s) 766, 1074
NlaIV GGNNCC 4 cut(s) 259, 321, 477, 670
NmuCI GTSAC 1 cut(s) 1054
PceI AGGCCT 1 cut(s) 1096
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 495, 801
PdiI GCCGGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 7 cut(s) 62, 286, 299, 510, 531, 623, 758
PflMI CCANNNNNTGG 2 cut(s) 541, 1025
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PpuMI RGGWCCY 2 cut(s) 319, 668
Psp5II RGGWCCY 2 cut(s) 319, 668
Psp6I CCWGG 2 cut(s) 393, 671
PspGI CCWGG 2 cut(s) 393, 671
PspN4I GGNNCC 4 cut(s) 259, 321, 477, 670
PspPI GGNCC 5 cut(s) 258, 319, 415, 475, 668
PspPPI RGGWCCY 2 cut(s) 319, 668
PstI CTGCAG 2 cut(s) 575, 889
PstNI CAGNNNCTG 1 cut(s) 456
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 2 cut(s) 296, 800
RsaI GTAC 2 cut(s) 218, 794
RsaNI GTAC 2 cut(s) 217, 793
RseI CAYNNNNRTG 2 cut(s) 57, 700
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 20, 155, 738
Sau3AI GATC 3 cut(s) 182, 675, 871
Sau96I GGNCC 5 cut(s) 258, 319, 415, 475, 668
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 3 cut(s) 203, 395, 673
SduI GDGCHC 3 cut(s) 118, 985, 1130
SfcI CTRYAG 2 cut(s) 571, 885
SgrAI CRCCGGYG 1 cut(s) 603
SinI GGWCC 4 cut(s) 258, 319, 415, 668
SmiMI CAYNNNNRTG 2 cut(s) 57, 700
SmlI CTYRAG 1 cut(s) 906
SmoI CTYRAG 1 cut(s) 906
Sse9I AATT 7 cut(s) 96, 151, 156, 383, 683, 820, 848
SseBI AGGCCT 1 cut(s) 1096
SsiI CCGC 5 cut(s) 413, 445, 607, 834, 882
SspMI CTAG 1 cut(s) 305
StuI AGGCCT 1 cut(s) 1096
StyD4I CCNGG 3 cut(s) 201, 393, 671
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 404, 1054
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 228, 289, 399
TasI AATT 7 cut(s) 96, 151, 156, 383, 683, 820, 848
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 448, 884
TfiI GAWTC 7 cut(s) 62, 286, 299, 510, 531, 623, 758
Tru1I TTAA 3 cut(s) 20, 155, 738
Tru9I TTAA 3 cut(s) 20, 155, 738
TscAI CASTG 3 cut(s) 527, 791, 1057
TseFI GTSAC 1 cut(s) 1054
Tsp45I GTSAC 1 cut(s) 1054
TspDTI ATGAA 3 cut(s) 75, 98, 341
TspRI CASTG 3 cut(s) 527, 791, 1057
Van91I CCANNNNNTGG 2 cut(s) 541, 1025
VpaK11BI GGWCC 4 cut(s) 258, 319, 415, 668
XapI RAATTY 2 cut(s) 151, 383
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.