Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011705

Physical Location & Seq

Genomic Coordinates Forward (+)

1465975 .. 1468891

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGAAGGGCTTTTGTTCATGTTATTCTGGGAGGAGGGGTGGCTGCTGGGTATGCAGCTCTTGAATTCAACAAGAGAGGCATCTCCCATGGTGAGCTCTGCATCATTTCTGAAGAATCAGTTCCACCTTATGAGAGACCTGCTTTAAGCAAAGGCTTTCTACTTCCAGAAGCGCCTGCACGCCTTCCATCATTTCATACTTGTGTCGGTGCTAAGGAGGAAAGGTTAACTCCAAAATGGTATAAGGAGCATGGGATCGAATTAGTTATAGGAACTCGAGTCAAGTCTGTTGATGTGAGACGCAAGACACTACTGACAGAATCTGGAGAGACTATAAGTTACAAAGTTCTCATCATTGCAACAGGTGCTCGGGCACTGAAGCTGGAAGAATTTGGAGTCAAAGGATCAGATTCTGAAAATGTGTGTTATTTACAAGATTTGGCTGATGCCAATAGACTAGTAAACTTGATGGAATCTTCCTCTGGTGGGAATGCTATTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCTGCATCATTAGCGATCAATAGGATGAATGTAACGATGGTTTTTCCAGAAGAACATTGCATGGCCCGATTATTCACACCCAAGATCGCAAGTTTTTATGAAGAATTTTACAAATCCAAAGGAGTGAAGTTTGTTAAAGGAACCATTTTGTCCTCGTTTGACATTGACTCGGACGGGAAGGTGACTGCTGTTAATCTTAGAGATGGAAGTAGTCTTCCTGCAGACGTGGTTGTTGTGGGAATAGGAATTCGTCCAAACACGAGCCTGTTTGAAGGTCAACTAAAGCTGGAGAAAGGTGGGATCAAAGTGAATGGAAAGATGCTGTCAAGTAATAGCTCAGTCTATGCAGTGGGAGATATTGCCACATTTCCAGTAAAAGTATTTGGTGAGTCCAGAAGGCTCGAACACGTTGACTCAGCAAGAAAATCCGCAAGACATGTTGTTACTGCAATTATGGAACGAAACCAAGTTGATGAATTCGACTATCTACCATTCTTTTACTCGAGAATCTTCACCCTGTCTTGGCAGTTTTACGGGGACAATGCAGGAGATGTAGTCCATTTCGGAGACTTCTCAGGAGGCACATTCGGGGCTTATTGGGTAAGAAAAGGTCAACTTGTCGGGTCTTTTCTCGAAGGCGGAACCAAGGAAGAGTATGAAGCTATAGCCAAGGCCACCAAGCTGAAGCCAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

410

Amino Acids

44.62

Weight (kDa)

7.09

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27820
fragaria_vesca	FvH4_6g50920 FvH4_6g50920
malus_domestica	MD09G1030800.v1.1 MD17G1032700.v1.1
prunus_persica	Prupe.3G286700_v2.0.a1
pyrus_communis	pycom111g02460 pycom17g03010 pycom17g03020
rosa_chinensis	RchiOBHm_Chr2g0172301
rosa_laevigata	RLG00000022103
rosa_multiflora	Rmu_sc0000467.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080000
rosa_rugosa	Rorug02G0558600
rosa_samantha	Rh2AG633600 Rh2BG647200 Rh2CG614100 Rh2DG662000
rosa_wichuraiana	Rw2G052460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AciI	CCGC	2 cut(s)	960, 1170
AclWI	GGATC	3 cut(s)	263, 412, 839
AcsI	RAATTY	5 cut(s)	65, 389, 635, 777, 1007
AcuI	CTGAAG	2 cut(s)	132, 398
AfiI	CCNNNNNNNGG	2 cut(s)	486, 1053
AflIII	ACRYGT	2 cut(s)	937, 967
AgsI	TTSAA	3 cut(s)	65, 70, 803
AhlI	ACTAGT	1 cut(s)	457
AjiI	CACGTC	1 cut(s)	757
AluBI	AGCT	7 cut(s)	59, 97, 382, 817, 867, 1193, 1213
AluI	AGCT	7 cut(s)	59, 97, 382, 817, 867, 1193, 1213
Alw21I	GWGCWC	2 cut(s)	99, 370
Alw26I	GTCTC	4 cut(s)	130, 292, 323, 1092
AlwI	GGATC	3 cut(s)	263, 412, 839
AlwNI	CAGNNNCTG	2 cut(s)	323, 413
Ama87I	CYCGRG	3 cut(s)	276, 369, 1033
AoxI	GGCC	2 cut(s)	594, 1203
ApeKI	GCWGC	3 cut(s)	44, 56, 533
ApoI	RAATTY	5 cut(s)	65, 389, 635, 777, 1007
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	4 cut(s)	104, 724, 929, 1036
AvaI	CYCGRG	3 cut(s)	276, 369, 1033
BaeGI	GKGCMC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	2 cut(s)	99, 370
BbvI	GCAGC	3 cut(s)	31, 68, 520
BccI	CCATC	4 cut(s)	196, 463, 562, 728
BcoDI	GTCTC	4 cut(s)	130, 292, 323, 1092
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	2 cut(s)	750, 1194
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	3 cut(s)	45, 57, 534
BlsI	GCNGC	3 cut(s)	46, 58, 535
BmeT110I	CYCGRG	3 cut(s)	276, 369, 1033
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	2 cut(s)	673, 1174
BmsI	GCATC	5 cut(s)	90, 111, 436, 545, 840
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	2 cut(s)	345, 839
Bpu10I	CCTNAGC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	88, 1176, 1200
BsaXI	ACNNNNNCTCC	6 cut(s)	24, 54, 209, 239, 1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 1053
Bse1I	ACTGG	1 cut(s)	902
Bse3DI	GCAATG	2 cut(s)	354, 586
BseDI	CCNNGG	3 cut(s)	88, 1176, 1200
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	486, 1053
BseMI	GCAATG	2 cut(s)	354, 586
BseMII	CTCAG	3 cut(s)	882, 960, 1119
BseNI	ACTGG	1 cut(s)	902
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	31, 68, 520
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	596, 1205
BsiHKAI	GWGCWC	2 cut(s)	99, 370
BsiHKCI	CYCGRG	3 cut(s)	276, 369, 1033
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	2 cut(s)	486, 1053
BsmAI	GTCTC	4 cut(s)	130, 292, 323, 1092
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	1082
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	596, 1205
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	3 cut(s)	276, 369, 1033
Bsp1286I	GDGCHC	3 cut(s)	99, 370, 376
Bsp143I	GATC	5 cut(s)	255, 404, 546, 615, 831
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	960, 1170
BspANI	GGCC	2 cut(s)	596, 1205
BspCNI	CTCAG	3 cut(s)	881, 959, 1118
BspLI	GGNNCC	2 cut(s)	673, 1174
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	263, 412, 839
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	354, 586
BsrI	ACTGG	1 cut(s)	902
BssECI	CCNNGG	3 cut(s)	88, 1176, 1200
BssMI	GATC	5 cut(s)	255, 404, 546, 615, 831
BssSI	CACGAG	1 cut(s)	790
BssT1I	CCWWGG	3 cut(s)	88, 1176, 1200
Bst2BI	CACGAG	1 cut(s)	790
Bst6I	CTCTTC	1 cut(s)	1176
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	177, 181
BstDEI	CTNAG	5 cut(s)	213, 728, 868, 946, 1105
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	5 cut(s)	258, 407, 549, 618, 834
BstMAI	GTCTC	4 cut(s)	130, 292, 323, 1092
BstMBI	GATC	5 cut(s)	255, 404, 546, 615, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 365, 542
BstNSI	RCATGY	1 cut(s)	971
BstSFI	CTRYAG	2 cut(s)	750, 1194
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	31, 68, 520
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	596, 1205
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	2 cut(s)	374, 885
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	177, 181
CaiI	CAGNNNCTG	2 cut(s)	323, 413
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	595
CseI	GACGC	1 cut(s)	309
CviAII	CATG	5 cut(s)	20, 89, 251, 592, 968
DdeI	CTNAG	5 cut(s)	213, 728, 868, 946, 1105
DpnI	GATC	5 cut(s)	257, 406, 548, 617, 833
DpnII	GATC	5 cut(s)	255, 404, 546, 615, 831
Eam1104I	CTCTTC	1 cut(s)	1176
EarI	CTCTTC	1 cut(s)	1176
EciI	GGCGGA	1 cut(s)	1185
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	3 cut(s)	88, 1176, 1200
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	132, 398
Eco88I	CYCGRG	3 cut(s)	276, 369, 1033
EcoICRI	GAGCTC	1 cut(s)	97
EcoRI	GAATTC	3 cut(s)	65, 777, 1007
EcoT14I	CCWWGG	3 cut(s)	88, 1176, 1200
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	88, 1176, 1200
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	5 cut(s)	23, 92, 254, 595, 971
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	5 cut(s)	19, 88, 250, 591, 967
Fnu4HI	GCNGC	3 cut(s)	45, 57, 534
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	45, 57, 534
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	45, 57, 534
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	345, 839
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	596, 1205
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	23, 92, 254, 595, 971
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	4 cut(s)	228, 809, 943, 1145
HindII	GTYRAC	4 cut(s)	228, 809, 943, 1145
HpaI	GTTAAC	1 cut(s)	228
HphI	GGTGA	4 cut(s)	104, 724, 929, 1036
Hpy166II	GTNNAC	5 cut(s)	228, 463, 809, 943, 1145
Hpy188I	TCNGA	5 cut(s)	112, 409, 415, 703, 1097
Hpy188III	TCNNGA	8 cut(s)	62, 167, 324, 578, 924, 1035, 1107, 1163
Hpy8I	GTNNAC	5 cut(s)	228, 463, 809, 943, 1145
HpyAV	CCTTC	5 cut(s)	194, 703, 797, 921, 1160
HpyCH4IV	ACGT	2 cut(s)	756, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 365, 542
HpyF3I	CTNAG	5 cut(s)	213, 728, 868, 946, 1105
HpySE526I	ACGT	2 cut(s)	756, 939
Hsp92II	CATG	5 cut(s)	23, 92, 254, 595, 971
HspAI	GCGC	1 cut(s)	173
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	255, 404, 546, 615, 831
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	31, 68, 520
LweI	GCATC	5 cut(s)	90, 111, 436, 545, 840
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	2 cut(s)	756, 939
MaeIII	GTNAC	4 cut(s)	338, 562, 712, 973
MalI	GATC	5 cut(s)	257, 406, 548, 617, 833
MboI	GATC	5 cut(s)	255, 404, 546, 615, 831
MboII	GAAGA	8 cut(s)	125, 398, 468, 593, 644, 737, 1033, 1193
MhlI	GDGCHC	3 cut(s)	99, 370, 376
MluCI	AATT	7 cut(s)	65, 260, 389, 635, 777, 981, 1007
MlyI	GAGTC	5 cut(s)	288, 405, 692, 929, 938
MnlI	CCTC	7 cut(s)	26, 29, 71, 211, 490, 694, 1103
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	4 cut(s)	146, 227, 666, 723
MslI	CAYNNNNRTG	2 cut(s)	201, 521
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	53, 365, 542
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	5 cut(s)	255, 404, 546, 615, 831
NlaIII	CATG	5 cut(s)	23, 92, 254, 595, 971
NlaIV	GGNNCC	2 cut(s)	673, 1174
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	971
PaeR7I	CTCGAG	2 cut(s)	276, 1033
PciI	ACATGT	1 cut(s)	967
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	5 cut(s)	116, 320, 410, 473, 1038
PkrI	GCNGC	3 cut(s)	46, 58, 535
PleI	GAGTC	5 cut(s)	287, 404, 692, 928, 938
PpsI	GAGTC	5 cut(s)	287, 404, 692, 928, 938
PscI	ACATGT	1 cut(s)	967
Psp124BI	GAGCTC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	673, 1174
PspPI	GGNCC	1 cut(s)	595
PspXI	VCTCGAGB	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	2 cut(s)	323, 413
RseI	CAYNNNNRTG	2 cut(s)	201, 521
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	4 cut(s)	146, 227, 666, 723
SatI	GCNGC	3 cut(s)	45, 57, 534
Sau3AI	GATC	5 cut(s)	255, 404, 546, 615, 831
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	5 cut(s)	288, 405, 692, 929, 938
SduI	GDGCHC	3 cut(s)	99, 370, 376
SfaNI	GCATC	5 cut(s)	90, 111, 436, 545, 840
SfcI	CTRYAG	2 cut(s)	750, 1194
Sfr274I	CTCGAG	2 cut(s)	276, 1033
SlaI	CTCGAG	2 cut(s)	276, 1033
SmiMI	CAYNNNNRTG	2 cut(s)	201, 521
SmlI	CTYRAG	2 cut(s)	276, 1033
SmoI	CTYRAG	2 cut(s)	276, 1033
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	7 cut(s)	65, 260, 389, 635, 777, 981, 1007
SsiI	CCGC	2 cut(s)	960, 1170
SspMI	CTAG	1 cut(s)	458
SstI	GAGCTC	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	88, 1176, 1200
TaiI	ACGT	2 cut(s)	759, 942
TaqI	TCGA	6 cut(s)	258, 277, 933, 1011, 1034, 1164
TasI	AATT	7 cut(s)	65, 260, 389, 635, 777, 981, 1007
TfiI	GAWTC	5 cut(s)	116, 320, 410, 473, 1038
Tru1I	TTAA	4 cut(s)	146, 227, 666, 723
Tru9I	TTAA	4 cut(s)	146, 227, 666, 723
TscAI	CASTG	2 cut(s)	381, 885
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	3 cut(s)	44, 56, 533
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	6 cut(s)	8, 185, 572, 645, 1020, 1203
TspRI	CASTG	2 cut(s)	381, 885
XapI	RAATTY	5 cut(s)	65, 389, 635, 777, 1007
XceI	RCATGY	1 cut(s)	971
XhoI	CTCGAG	2 cut(s)	276, 1033
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.