Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000467.1

Orthogroup ID

OG0011705

Physical Location & Seq

Genomic Coordinates Forward (+)

60388 .. 63018

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000467.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgctcgcgacgcgtggcagcacacaactcgctggaccgacccaaatccaaaaacgcaaacgggccccacccatgatcaaaagggtcgcggcccatgattcgaagggcatcatcgtaaatccgccagcatcacagtgtgaatatgattgggagagagattttgatgaagaagaagaagaagaagaaggagaagggaagatggggagggcatttttgtatgtgattcttggaggaggggtggcagctggttatgcagcacttgaattcaccaagagaggcatctcccatggtgaactctgcatcatttccgaggagccagttgccccttacgagagacctgctttaagcaaaggttttctacttccagaagcccctgcatgccttccatcattccacacatgtgttggtgccaatgaggaaaggttaactccaaaatggtataaggaacatgggattgaattagttcttggaactcgagtcaagtctgttgatgttagacgcaagacaatattgacaggatctggagagactataacttacaggactctcattattgcaacaggtgctcgggcactgaagctggaggagtttggagtcaaaggatcagattctgaaaacgtgtgctatttacgaaatttggttgatgccaatagactcgtcgacttggtgcaatcttgccctggcggaaatgctgttatcattggtggtggctacattggaatggagtgtgctgcatcgttggtgatcaatagaatgaatgtaacaatggtttttccagaagaacattgcatggctcgattattcacacccaagattgcaagttattatgaagagttttacaagtccaaaggagtgaattttgttaaaggaaccattttgtcctcatttgacattgacctggatgggaaggattcgtggaatttctgtggattgcgttggaggaaatctaccagtctttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

320

Amino Acids

35.27

Weight (kDa)

6.28

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27820
fragaria_vesca	FvH4_6g50920 FvH4_6g50920
malus_domestica	MD09G1030800.v1.1 MD17G1032700.v1.1
prunus_persica	Prupe.3G286700_v2.0.a1
pyrus_communis	pycom111g02460 pycom17g03010 pycom17g03020
rosa_chinensis	RchiOBHm_Chr2g0172301
rosa_laevigata	RLG00000022103
rosa_multiflora	Rmu_sc0000467.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080000
rosa_rugosa	Rorug02G0558600
rosa_samantha	Rh2AG633600 Rh2BG647200 Rh2CG614100 Rh2DG662000
rosa_wichuraiana	Rw2G052460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	3 cut(s)	8, 13, 89
AciI	CCGC	3 cut(s)	89, 122, 684
AclWI	GGATC	2 cut(s)	526, 610
AcsI	RAATTY	4 cut(s)	263, 634, 856, 919
AcuI	CTGAAG	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	137
AflIII	ACRYGT	3 cut(s)	11, 398, 618
AgsI	TTSAA	2 cut(s)	263, 458
AjnI	CCWGG	2 cut(s)	679, 897
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	245, 580
AluI	AGCT	2 cut(s)	245, 580
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	2 cut(s)	328, 521
AlwI	GGATC	2 cut(s)	526, 610
AlwNI	CAGNNNCTG	2 cut(s)	521, 611
Ama87I	CYCGRG	2 cut(s)	474, 567
AoxI	GGCC	2 cut(s)	63, 90
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	4 cut(s)	18, 242, 254, 731
ApoI	RAATTY	4 cut(s)	263, 634, 856, 919
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	4 cut(s)	35, 63, 64, 91
AsuHPI	GGTGA	3 cut(s)	259, 302, 754
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	2 cut(s)	474, 567
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	2 cut(s)	67, 574
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	30, 254, 266, 718
BccI	CCATC	3 cut(s)	193, 394, 896
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 320, 354
BciT130I	CCWGG	2 cut(s)	681, 899
BclI	TGATCA	2 cut(s)	75, 744
BcoDI	GTCTC	2 cut(s)	328, 521
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	5 cut(s)	19, 90, 243, 255, 732
BlsI	GCNGC	5 cut(s)	20, 91, 244, 256, 733
Bme1390I	CCNGG	2 cut(s)	681, 899
Bme18I	GGWCC	1 cut(s)	35
BmeT110I	CYCGRG	2 cut(s)	474, 567
BmgT120I	GGNCC	4 cut(s)	35, 63, 64, 91
BmiI	GGNNCC	5 cut(s)	65, 66, 315, 409, 871
BmrFI	CCNGG	2 cut(s)	681, 899
BmsI	GCATC	6 cut(s)	117, 137, 288, 309, 634, 743
BpmI	CTGGAG	2 cut(s)	543, 602
Bpu14I	TTCGAA	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	286, 309, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse1I	ACTGG	2 cut(s)	317, 951
Bse3DI	GCAATG	1 cut(s)	784
BseBI	CCWGG	2 cut(s)	681, 899
BseDI	CCNNGG	3 cut(s)	286, 309, 679
BseGI	GGATG	1 cut(s)	907
BseMI	GCAATG	1 cut(s)	784
BseNI	ACTGG	2 cut(s)	317, 951
BseRI	GAGGAG	3 cut(s)	246, 326, 599
BseSI	GKGCMC	2 cut(s)	67, 574
BseXI	GCAGC	4 cut(s)	30, 254, 266, 718
Bsh1236I	CGCG	3 cut(s)	8, 13, 89
BshFI	GGCC	2 cut(s)	65, 92
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	2 cut(s)	474, 567
BsmAI	GTCTC	2 cut(s)	328, 521
BsnI	GGCC	2 cut(s)	65, 92
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	2 cut(s)	474, 567
Bsp119I	TTCGAA	1 cut(s)	101
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	67, 568, 574
Bsp143I	GATC	4 cut(s)	75, 518, 602, 744
Bsp19I	CCATGG	1 cut(s)	286
Bsp68I	TCGCGA	1 cut(s)	8
BspACI	CCGC	3 cut(s)	89, 122, 684
BspANI	GGCC	2 cut(s)	65, 92
BspFNI	CGCG	3 cut(s)	8, 13, 89
BspLI	GGNNCC	5 cut(s)	65, 66, 315, 409, 871
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	2 cut(s)	526, 610
BspT104I	TTCGAA	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	784
BsrI	ACTGG	2 cut(s)	317, 951
BssECI	CCNNGG	3 cut(s)	286, 309, 679
BssMI	GATC	4 cut(s)	75, 518, 602, 744
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	681, 899
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	6, 126, 379
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	907
BstFNI	CGCG	3 cut(s)	8, 13, 89
BstKTI	GATC	4 cut(s)	78, 521, 605, 747
BstMAI	GTCTC	2 cut(s)	328, 521
BstMBI	GATC	4 cut(s)	75, 518, 602, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 251, 563
BstNI	CCWGG	2 cut(s)	681, 899
BstNSI	RCATGY	2 cut(s)	381, 402
BstSCI	CCNGG	2 cut(s)	679, 897
BstSLI	GKGCMC	2 cut(s)	67, 574
BstUI	CGCG	3 cut(s)	8, 13, 89
BstV1I	GCAGC	4 cut(s)	30, 254, 266, 718
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	65, 92
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	907
BtsIMutI	CAGTG	2 cut(s)	140, 572
BtuMI	TCGCGA	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	6, 126, 379
CaiI	CAGNNNCTG	2 cut(s)	521, 611
Cfr13I	GGNCC	4 cut(s)	35, 63, 64, 91
CseI	GACGC	2 cut(s)	19, 507
CviAII	CATG	7 cut(s)	73, 95, 287, 378, 399, 449, 790
CviJI	RGCY	8 cut(s)	65, 92, 245, 316, 371, 580, 711, 794
CviKI_1	RGCY	8 cut(s)	65, 92, 245, 316, 371, 580, 711, 794
DpnI	GATC	4 cut(s)	77, 520, 604, 746
DpnII	GATC	4 cut(s)	75, 518, 602, 744
DraIII	CACNNNGTG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EciI	GGCGGA	2 cut(s)	111, 699
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	2 cut(s)	474, 567
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	679, 897
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	7 cut(s)	76, 98, 290, 381, 402, 452, 793
FatI	CATG	7 cut(s)	72, 94, 286, 377, 398, 448, 789
FbaI	TGATCA	2 cut(s)	75, 744
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	5 cut(s)	19, 90, 243, 255, 732
FokI	GGATG	1 cut(s)	914
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	19, 90, 243, 255, 732
GluI	GCNGC	5 cut(s)	19, 90, 243, 255, 732
GsuI	CTGGAG	2 cut(s)	543, 602
HaeIII	GGCC	2 cut(s)	65, 92
HgaI	GACGC	2 cut(s)	19, 507
Hin1II	CATG	7 cut(s)	76, 98, 290, 381, 402, 452, 793
HincII	GTYRAC	2 cut(s)	426, 661
HindII	GTYRAC	2 cut(s)	426, 661
HinfI	GANTC	8 cut(s)	98, 223, 477, 544, 594, 608, 654, 911
HpaI	GTTAAC	1 cut(s)	426
HphI	GGTGA	3 cut(s)	259, 302, 754
Hpy166II	GTNNAC	3 cut(s)	293, 426, 661
Hpy188I	TCNGA	3 cut(s)	310, 607, 613
Hpy188III	TCNNGA	4 cut(s)	7, 365, 522, 776
Hpy8I	GTNNAC	3 cut(s)	293, 426, 661
Hpy99I	CGWCG	2 cut(s)	13, 662
HpyAV	CCTTC	5 cut(s)	97, 179, 185, 392, 901
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	8 cut(s)	254, 300, 377, 557, 670, 734, 789, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 251, 563
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	7 cut(s)	76, 98, 290, 381, 402, 452, 793
Ksp22I	TGATCA	2 cut(s)	75, 744
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	75, 518, 602, 744
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	4 cut(s)	30, 254, 266, 718
LweI	GCATC	6 cut(s)	117, 137, 288, 309, 634, 743
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	77, 520, 604, 746
MboI	GATC	4 cut(s)	75, 518, 602, 744
MboII	GAAGA	9 cut(s)	179, 182, 185, 188, 191, 194, 208, 791, 842
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	3 cut(s)	67, 568, 574
MluCI	AATT	5 cut(s)	263, 458, 634, 856, 919
MluI	ACGCGT	1 cut(s)	11
MlyI	GAGTC	4 cut(s)	486, 538, 603, 648
MmeI	TCCRAC	1 cut(s)	917
MnlI	CCTC	9 cut(s)	198, 224, 227, 269, 304, 409, 577, 892, 933
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	344, 425, 864
MslI	CAYNNNNRTG	3 cut(s)	133, 399, 719
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	681, 899
MvaI	CCWGG	2 cut(s)	681, 899
MvnI	CGCG	3 cut(s)	8, 13, 89
MwoI	GCNNNNNNNGC	3 cut(s)	10, 251, 563
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	75, 518, 602, 744
NlaIII	CATG	7 cut(s)	76, 98, 290, 381, 402, 452, 793
NlaIV	GGNNCC	5 cut(s)	65, 66, 315, 409, 871
NruI	TCGCGA	1 cut(s)	8
NspI	RCATGY	2 cut(s)	381, 402
NspV	TTCGAA	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	474
PciI	ACATGT	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	98, 223, 608, 911
PkrI	GCNGC	5 cut(s)	20, 91, 244, 256, 733
PleI	GAGTC	4 cut(s)	485, 538, 602, 648
PpsI	GAGTC	4 cut(s)	485, 538, 602, 648
PscI	ACATGT	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	679, 897
PspGI	CCWGG	2 cut(s)	679, 897
PspN4I	GGNNCC	5 cut(s)	65, 66, 315, 409, 871
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	4 cut(s)	35, 63, 64, 91
PspXI	VCTCGAGB	1 cut(s)	474
PstNI	CAGNNNCTG	2 cut(s)	521, 611
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	245
RruI	TCGCGA	1 cut(s)	8
RseI	CAYNNNNRTG	3 cut(s)	133, 399, 719
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	344, 425, 864
SatI	GCNGC	5 cut(s)	19, 90, 243, 255, 732
Sau3AI	GATC	4 cut(s)	75, 518, 602, 744
Sau96I	GGNCC	4 cut(s)	35, 63, 64, 91
SchI	GAGTC	4 cut(s)	486, 538, 603, 648
ScrFI	CCNGG	2 cut(s)	681, 899
SduI	GDGCHC	3 cut(s)	67, 568, 574
SetI	ASST	8 cut(s)	247, 340, 355, 425, 565, 582, 621, 900
SfaNI	GCATC	6 cut(s)	117, 137, 288, 309, 634, 743
Sfr274I	CTCGAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	133, 399, 719
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	5 cut(s)	263, 458, 634, 856, 919
SsiI	CCGC	3 cut(s)	89, 122, 684
SspI	AATATT	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	679, 897
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	4 cut(s)	101, 475, 660, 796
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	5 cut(s)	263, 458, 634, 856, 919
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	98, 223, 608, 911
Tru1I	TTAA	3 cut(s)	344, 425, 864
Tru9I	TTAA	3 cut(s)	344, 425, 864
TscAI	CASTG	2 cut(s)	140, 579
TseI	GCWGC	4 cut(s)	18, 242, 254, 731
TspDTI	ATGAA	4 cut(s)	180, 770, 843, 948
TspRI	CASTG	2 cut(s)	140, 579
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	4 cut(s)	263, 634, 856, 919
XceI	RCATGY	2 cut(s)	381, 402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.