Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD17G1205100.v1.1 |
| pyrus_communis | pycom111g03830 pycom17g20890 |
| rosa_multiflora | Rmu_sc0040367.1_g000001 Rmu_ssc0000393.1_g000031 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 202 |
| Acc36I | ACCTGC | 1 cut(s) | 202 |
| AciI | CCGC | 1 cut(s) | 401 |
| AclWI | GGATC | 2 cut(s) | 254, 267 |
| AgsI | TTSAA | 2 cut(s) | 167, 227 |
| AjnI | CCWGG | 1 cut(s) | 340 |
| AluBI | AGCT | 1 cut(s) | 7 |
| AluI | AGCT | 1 cut(s) | 7 |
| Alw21I | GWGCWC | 1 cut(s) | 373 |
| AlwI | GGATC | 2 cut(s) | 254, 267 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 133, 165 |
| AspLEI | GCGC | 1 cut(s) | 271 |
| AsuHPI | GGTGA | 3 cut(s) | 22, 133, 226 |
| AsuII | TTCGAA | 1 cut(s) | 187 |
| BamHI | GGATCC | 1 cut(s) | 259 |
| Bbv12I | GWGCWC | 1 cut(s) | 373 |
| BccI | CCATC | 2 cut(s) | 55, 214 |
| BciT130I | CCWGG | 1 cut(s) | 342 |
| BfaI | CTAG | 2 cut(s) | 107, 152 |
| BfuAI | ACCTGC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 1 cut(s) | 342 |
| BmiI | GGNNCC | 3 cut(s) | 161, 261, 414 |
| BmrFI | CCNGG | 1 cut(s) | 342 |
| BmsI | GCATC | 2 cut(s) | 93, 198 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 82, 114 |
| Bpu14I | TTCGAA | 1 cut(s) | 187 |
| BsaJI | CCNNGG | 2 cut(s) | 173, 340 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseBI | CCWGG | 1 cut(s) | 342 |
| BseDI | CCNNGG | 2 cut(s) | 173, 340 |
| BseGI | GGATG | 3 cut(s) | 39, 99, 463 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BsiHKAI | GWGCWC | 1 cut(s) | 373 |
| Bsp119I | TTCGAA | 1 cut(s) | 187 |
| Bsp1286I | GDGCHC | 1 cut(s) | 373 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| BspACI | CCGC | 1 cut(s) | 401 |
| BspCNI | CTCAG | 1 cut(s) | 112 |
| BspLI | GGNNCC | 3 cut(s) | 161, 261, 414 |
| BspMI | ACCTGC | 1 cut(s) | 202 |
| BspPI | GGATC | 2 cut(s) | 254, 267 |
| BspT104I | TTCGAA | 1 cut(s) | 187 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 2 cut(s) | 173, 340 |
| BssMI | GATC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 1 cut(s) | 342 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstBI | TTCGAA | 1 cut(s) | 187 |
| BstC8I | GCNNGC | 1 cut(s) | 137 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstF5I | GGATG | 3 cut(s) | 39, 99, 463 |
| BstHHI | GCGC | 1 cut(s) | 271 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstNI | CCWGG | 1 cut(s) | 342 |
| BstSCI | CCNGG | 1 cut(s) | 340 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BtgZI | GCGATG | 1 cut(s) | 38 |
| BtsCI | GGATG | 3 cut(s) | 39, 99, 463 |
| BtsIMutI | CAGTG | 1 cut(s) | 472 |
| BveI | ACCTGC | 1 cut(s) | 202 |
| Cac8I | GCNNGC | 1 cut(s) | 137 |
| CfoI | GCGC | 1 cut(s) | 271 |
| CviAII | CATG | 1 cut(s) | 490 |
| CviJI | RGCY | 4 cut(s) | 7, 135, 415, 431 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 135, 415, 431 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 1 cut(s) | 493 |
| FaiI | YATR | 6 cut(s) | 296, 311, 418, 420, 491, 497 |
| FatI | CATG | 1 cut(s) | 489 |
| FauNDI | CATATG | 1 cut(s) | 418 |
| FokI | GGATG | 3 cut(s) | 46, 106, 470 |
| FspBI | CTAG | 2 cut(s) | 107, 152 |
| GlaI | GCGC | 1 cut(s) | 270 |
| HhaI | GCGC | 1 cut(s) | 271 |
| Hin1II | CATG | 1 cut(s) | 493 |
| Hin6I | GCGC | 1 cut(s) | 269 |
| HinP1I | GCGC | 1 cut(s) | 269 |
| HinfI | GANTC | 5 cut(s) | 82, 97, 148, 500, 512 |
| HphI | GGTGA | 3 cut(s) | 22, 133, 226 |
| Hpy166II | GTNNAC | 1 cut(s) | 354 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 377, 517 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 354 |
| HpyAV | CCTTC | 2 cut(s) | 173, 250 |
| HpyCH4V | TGCA | 1 cut(s) | 211 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| Hsp92II | CATG | 1 cut(s) | 493 |
| HspAI | GCGC | 1 cut(s) | 269 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LmnI | GCTCC | 1 cut(s) | 412 |
| LpnPI | CCDG | 6 cut(s) | 71, 149, 197, 273, 327, 354 |
| LweI | GCATC | 2 cut(s) | 93, 198 |
| MaeI | CTAG | 2 cut(s) | 107, 152 |
| MaeIII | GTNAC | 1 cut(s) | 470 |
| MalI | GATC | 1 cut(s) | 261 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 9 cut(s) | 40, 49, 176, 201, 229, 243, 255, 258, 292 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MhlI | GDGCHC | 1 cut(s) | 373 |
| MluCI | AATT | 1 cut(s) | 345 |
| MlyI | GAGTC | 3 cut(s) | 76, 91, 157 |
| MnlI | CCTC | 5 cut(s) | 24, 58, 84, 112, 397 |
| MspA1I | CMGCKG | 1 cut(s) | 401 |
| MspR9I | CCNGG | 1 cut(s) | 342 |
| MvaI | CCWGG | 1 cut(s) | 342 |
| NdeI | CATATG | 1 cut(s) | 418 |
| NdeII | GATC | 1 cut(s) | 259 |
| NlaIII | CATG | 1 cut(s) | 493 |
| NlaIV | GGNNCC | 3 cut(s) | 161, 261, 414 |
| NspV | TTCGAA | 1 cut(s) | 187 |
| PaqCI | CACCTGC | 1 cut(s) | 202 |
| PfeI | GAWTC | 2 cut(s) | 500, 512 |
| PleI | GAGTC | 3 cut(s) | 76, 91, 156 |
| PpsI | GAGTC | 3 cut(s) | 76, 91, 156 |
| Psp6I | CCWGG | 1 cut(s) | 340 |
| PspGI | CCWGG | 1 cut(s) | 340 |
| PspN4I | GGNNCC | 3 cut(s) | 161, 261, 414 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| SchI | GAGTC | 3 cut(s) | 76, 91, 157 |
| ScrFI | CCNGG | 1 cut(s) | 342 |
| SduI | GDGCHC | 1 cut(s) | 373 |
| SetI | ASST | 6 cut(s) | 9, 69, 123, 165, 179, 216 |
| SfaNI | GCATC | 2 cut(s) | 93, 198 |
| SfuI | TTCGAA | 1 cut(s) | 187 |
| Sse9I | AATT | 1 cut(s) | 345 |
| SsiI | CCGC | 1 cut(s) | 401 |
| SspMI | CTAG | 2 cut(s) | 107, 152 |
| StyD4I | CCNGG | 1 cut(s) | 340 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaqI | TCGA | 1 cut(s) | 187 |
| TasI | AATT | 1 cut(s) | 345 |
| TfiI | GAWTC | 2 cut(s) | 500, 512 |
| TscAI | CASTG | 1 cut(s) | 472 |
| TspDTI | ATGAA | 6 cut(s) | 17, 41, 50, 435, 474, 506 |
| TspRI | CASTG | 1 cut(s) | 472 |
| XbaI | TCTAGA | 1 cut(s) | 151 |
| XspI | CTAG | 2 cut(s) | 107, 152 |