Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0021198

Physical Location & Seq

Genomic Coordinates Forward (+)

176621 .. 180656

Gene Structure 4036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtcggacgtccatctcttcaataacatctctctcggcggccgcggcggcactgatgaagattttgttattgagaaggatgatggaggttctccaactgatgattctgggggtgaagattctgatgctagtgaaagtggaggcgagaaagagaagcctgctaaaaaggagcccaggaaagaaccttcaacttcaaaggtgccatcttccaagaaaaaatccaaagaggtcgatgaagatggtccaaagaagaaaaaacagaaaaagaagaaggatccaaatgcaccaaaaagagcgatgtctggtttcatgttcttctcacagatggagagagagaatgtgaagaaagacaaccccgggattgcatttacggatgtgggaagagtgcttggggacaagtggaagaagatgtcagcggaggagaaagaaccatatgaagcaaaggcccgtcaagataaattacgctacaaggatgaaattagtggctacaataagagtaacaccccccaacccatgaatgtggattcagggaatgaatctgacagcgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box POB3_N Rtt106 SSrecog

Protein Analysis

183

Amino Acids

20.27

Weight (kDa)

6.07

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021198)

Species	Orthologous Gene IDs
malus_domestica	MD17G1205100.v1.1
pyrus_communis	pycom111g03830 pycom17g20890
rosa_multiflora	Rmu_sc0040367.1_g000001 Rmu_ssc0000393.1_g000031

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	45
AciI	CCGC	5 cut(s)	39, 43, 45, 48, 416
AclWI	GGATC	2 cut(s)	269, 282
AcoI	YGGCCR	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	22, 189, 195
AjnI	CCWGG	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AlwI	GGATC	2 cut(s)	269, 282
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	40, 444
AspS9I	GGNCC	2 cut(s)	242, 445
AsuC2I	CCSGG	2 cut(s)	357, 358
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	174
BccI	CCATC	5 cut(s)	21, 77, 211, 233, 319
BciT130I	CCWGG	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	357, 358
BfaI	CTAG	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	4 cut(s)	40, 43, 46, 49
BlsI	GCNGC	4 cut(s)	41, 44, 47, 50
Bme1390I	CCNGG	3 cut(s)	175, 357, 358
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	242, 445
BmiI	GGNNCC	3 cut(s)	171, 201, 276
BmrFI	CCNGG	3 cut(s)	175, 357, 358
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	2 cut(s)	357, 358
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	43, 173, 355, 356
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	43, 173, 355, 356
BseGI	GGATG	3 cut(s)	85, 379, 478
BseRI	GAGGAG	1 cut(s)	434
BseX3I	CGGCCG	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	42, 446
BshNI	GGYRCC	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	42, 446
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	5 cut(s)	39, 43, 45, 48, 416
BspANI	GGCC	2 cut(s)	42, 446
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	171, 201, 276
BspPI	GGATC	2 cut(s)	269, 282
BspT107I	GGYRCC	1 cut(s)	199
BssECI	CCNNGG	4 cut(s)	43, 173, 355, 356
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	23, 376
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	85, 379, 478
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 48
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	173, 355, 356
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	274
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	42, 446
BtgI	CCRYGG	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	85, 379, 478
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	159
CciNI	GCGGCCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	242, 445
Cfr42I	CCGCGG	1 cut(s)	46
Cfr9I	CCCGGG	1 cut(s)	356
CviAII	CATG	2 cut(s)	310, 514
CviJI	RGCY	5 cut(s)	42, 157, 172, 446, 486
CviKI_1	RGCY	5 cut(s)	42, 157, 172, 446, 486
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	23, 376
EarI	CTCTTC	2 cut(s)	23, 376
EclXI	CGGCCG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	242
Eco52I	CGGCCG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	313, 517
FaiI	YATR	4 cut(s)	311, 433, 435, 515
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	309, 513
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	40, 43, 46, 49
FokI	GGATG	3 cut(s)	92, 386, 485
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	40, 43, 46, 49
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	40, 43, 46, 49
HaeIII	GGCC	2 cut(s)	42, 446
HapII	CCGG	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	313, 517
HinfI	GANTC	4 cut(s)	104, 119, 524, 536
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	7, 124, 541
Hpy188III	TCNNGA	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	70, 195, 265
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	284, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 48
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	313, 517
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	93, 160, 171, 187, 288, 370, 513
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	458, 477
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	80, 134, 220, 412
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	2 cut(s)	45, 416
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	3 cut(s)	175, 357, 358
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	45, 48
NciI	CCSGG	2 cut(s)	357, 358
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	313, 517
NlaIV	GGNNCC	3 cut(s)	171, 201, 276
NmeAIII	GCCGAG	1 cut(s)	15
NotI	GCGGCCGC	1 cut(s)	40
PfeI	GAWTC	4 cut(s)	104, 119, 524, 536
PkrI	GCNGC	4 cut(s)	41, 44, 47, 50
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	171, 201, 276
PspPI	GGNCC	2 cut(s)	242, 445
PsuI	RGATCY	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	4 cut(s)	40, 43, 46, 49
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	242, 445
ScrFI	CCNGG	3 cut(s)	175, 357, 358
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	5 cut(s)	12, 91, 187, 201, 231
SfaNI	GCATC	1 cut(s)	115
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	242
SmaI	CCCGGG	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	2 cut(s)	458, 477
SsiI	CCGC	5 cut(s)	39, 43, 45, 48, 416
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	173, 355, 356
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	458, 477
TauI	GCSGC	4 cut(s)	42, 45, 48, 51
TfiI	GAWTC	4 cut(s)	104, 119, 524, 536
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	7 cut(s)	72, 249, 298, 450, 489, 530, 549
TspGWI	ACGGA	1 cut(s)	386
TspMI	CCCGGG	1 cut(s)	356
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	242
XmaI	CCCGGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	129
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.