pycom111g04840

potassium channel activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
2925794 .. 2927854
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2061 bp
ATGATGATCAATATGAGCAGGATGAAGGTGAGGTTGAGCAACACGGAATTGATCACCCTGCGAAGTACAATTACTCGTTTGGTAATTGTTGCCTCCACCATTCTCTTGCCGTCCATCGCCACCTCTTTTCACCCCTTGCCTTTCCCCGCGGTGCCATTTGAGCATAGGCCCGTAGGTCCCCTCCGTCAACTTATCCTTCCACCACCACCACCGCCACCTTCAATTCCTTTACCTCCACCCCCGCTGCCTTCACCTCCAATATTGCCTCCACCTTTACCTCCTCCTTTTCCACCTCCGCCAACACTACCTACACCTTCATTTCCGCTTCAACGACCTCCACCTCTACAACCACCACCATCACCACCTTCATTTCCACCTCTTCCACCACCTCCACCTTCACTTCCATCTTCACCACTTCCTCCACCACCACTTCCACCACCGGCTCCACCATCTCTACCACCGCCACCTTCGCTTATACCACATCCACATCCACCACCTCCATTTCCATCTCCACTACTACCACCTTCATCCCCAACTCTACCACCACCTTCACTTCGACGCCCAATTCTTCCACCATTACCTCCACCTTCACTTCCACCTCCACCTATAGCACGGCCTCCATCTCTACCACCACCACCTCCGCATATACCACATCCACCACCTCCATTTCCACCCCCTCCACCACTTCCACCTATAGCACCACCTCCATCTCTACCACCACCACCTCCGCCGATACCACCTCCACCTTCACTTCCACCTCCACTACTTCCTTCACCATTTCCACCTCCACTACTTCCTCCTCCACTTCCACATATAGCGCCACCTCCATCTCTACCACCACCACCTCCGCCTATACCACATCCACCACCTCCACTACTTCCTCTACTACTTCCACCAATAGCACCACCTCCATCTCCATCTCTACCACCACCATCTCCACCTATACCACTTCCACCACCTTCATTTCCATCTTCACTACCATTACCACCACCACCCCTTCCACGCTTCCCTCCACTTCGATGGCCACCACTTCCACCTCCACTACTTCCTCCACCACTTCCACCTATAGCACCGCCTCCATCTCCATCTCTACCACCACCATCTCCGCTTATACCACTTCCGCCACCTTCATTTCCATCTTCACTACCATTACCACCACCACCCCTTCCACGCTTCCCTCCACTTCGATGGCCACCACTTCCACCTCCACTACTTCCTCCACCACTTCCACCAATAGCACCACCTCCATCTCCATCTCTACCACCACCATCTCCGCCTATACCACTTCCACCTCCTTCATTTCCATCTTTGCTACCATTACCACCACCACCCTTTCCACGCTTCCCTCCAATTCGATGGCCAATTCTTCCACCTCCACCTTCATTTCCACCTCCACTACTTACTCCACCACCTCCACCTCTAGCACCACCACCGACTTCTAAGCGTTGGGAAGCCTTTATCTGGCCAGGTATGTATGCTATAGTTTTATTATTATGCTTCTGGTTTAGGCATGATTTTATTGACCGTACCAAAGGGAGAAAGTTACGATGTTTCGTTTTAGCACTCGCTATCACGGCGGAAACAATGACAACAGTAGGTTATGGCGATATAGTTCCAAATACCACTTGGGGGAAAGTATTCGTGGAATTACTGAGTTATTTTGTTTATGTGCTTCTGAGCTACTGGGGGGAAGTATGTTTGATGTCCGTATGCGATATTTTGCTTAATCTAGTAGTAAGATTACTGTTGTGTTTTGGTATCAGCGGAGATAATTCGGACGGTTTTGTAAGTTGGGTAGAGTTGTTAGCTCCAATGGTGGCACCATTTATCTTTGTATTGATAGGGATGTTTGGGTTTCATTACACAGCGAATCTGAGCTTACAGAACTCCCTGTATCTATCAGTTGTGACCATAACAGGTGTTGGATTTGGTGATGTTGATGTTCTTAATACTGCAGGAGTGGTTTTCGGTAGCTTATGGATGTGCATATCCACCCTAATATATGGCACGTGTTGTACCTGTCTAGCCGATAGAATTGCAGCAAGGTTGGGTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

687

Amino Acids

73.21

Weight (kDa)

9.7

Isoelectric Point (pI)

105.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 517 - 556 2.7e-07 Ion channel
Ion_trans_2 PF07885 610 - 679 1.4e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021156)

Species Orthologous Gene IDs
malus_domestica MD09G1058100.v1.1 MD09G1058400.v1.1 MD09G1058700.v1.1
prunus_persica Prupe.1G192600_v2.0.a1
pyrus_communis pycom111g04840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 151, 1819
AccII CGCG 1 cut(s) 149
AcoI YGGCCR 4 cut(s) 1022, 1190, 1358, 1463
AcvI CACGTG 1 cut(s) 2010
AcyI GRCGYC 1 cut(s) 559
AfaI GTAC 3 cut(s) 67, 1528, 2017
AfiI CCNNNNNNNGG 2 cut(s) 1461, 1629
AflIII ACRYGT 1 cut(s) 2009
AgsI TTSAA 2 cut(s) 222, 329
AjnI CCWGG 1 cut(s) 1465
AluBI AGCT 4 cut(s) 1680, 1808, 1878, 1974
AluI AGCT 4 cut(s) 1680, 1808, 1878, 1974
AoxI GGCC 6 cut(s) 167, 614, 1022, 1190, 1358, 1463
ApeKI GCWGC 2 cut(s) 244, 2039
Asp700I GAANNNNTTC 1 cut(s) 1637
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 168, 176
AsuHPI GGTGA 8 cut(s) 40, 46, 122, 243, 351, 402, 765, 1943
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
BanI GGYRCC 2 cut(s) 151, 1819
BarI GAAGNNNNNNTAC 2 cut(s) 55, 87
BbrPI CACGTG 1 cut(s) 2010
BbvI GCAGC 2 cut(s) 231, 2051
BceAI ACGGC 3 cut(s) 94, 629, 1590
BcgI CGANNNNNNTGC 2 cut(s) 2018, 2052
BciT130I CCWGG 1 cut(s) 1467
BclI TGATCA 2 cut(s) 6, 51
BfaI CTAG 3 cut(s) 1421, 1730, 2024
BfmI CTRYAG 5 cut(s) 606, 693, 1065, 1479, 1953
BfoI RGCGCY 1 cut(s) 821
BisI GCNGC 2 cut(s) 245, 2040
BlsI GCNGC 2 cut(s) 246, 2041
Bme1390I CCNGG 1 cut(s) 1467
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 168, 176
BmiI GGNNCC 4 cut(s) 153, 178, 444, 1821
BmrFI CCNGG 1 cut(s) 1467
BmrI ACTGGG 1 cut(s) 1693
BmuI ACTGGG 1 cut(s) 1693
BsaAI YACGTR 1 cut(s) 2010
BsaHI GRCGYC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 1461, 1629
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 1688
BseBI CCWGG 1 cut(s) 1467
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 8 cut(s) 27, 481, 487, 527, 652, 859, 1851, 1986
BseLI CCNNNNNNNGG 2 cut(s) 1461, 1629
BseMII CTCAG 3 cut(s) 1643, 1667, 1865
BseNI ACTGG 1 cut(s) 1688
BseRI GAGGAG 2 cut(s) 270, 789
BseXI GCAGC 2 cut(s) 231, 2051
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 6 cut(s) 169, 616, 1024, 1192, 1360, 1465
BshNI GGYRCC 2 cut(s) 151, 1819
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 1461, 1629
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 6 cut(s) 169, 616, 1024, 1192, 1360, 1465
Bsp143I GATC 2 cut(s) 6, 51
BspANI GGCC 6 cut(s) 169, 616, 1024, 1192, 1360, 1465
BspCNI CTCAG 3 cut(s) 1644, 1668, 1866
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 153, 178, 444, 1821
BspMAI CTGCAG 1 cut(s) 1957
BspT107I GGYRCC 2 cut(s) 151, 1819
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 1688
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 6, 51
BssNI GRCGYC 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 1467
Bst4CI ACNGT 4 cut(s) 1526, 1594, 1746, 1781
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 2010
BstDEI CTNAG 4 cut(s) 1440, 1652, 1676, 1874
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 8 cut(s) 27, 481, 487, 527, 652, 859, 1851, 1986
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 2 cut(s) 9, 54
BstMBI GATC 2 cut(s) 6, 51
BstMWI GCNNNNNNNGC 3 cut(s) 160, 469, 1574
BstNI CCWGG 1 cut(s) 1467
BstSCI CCNGG 1 cut(s) 1465
BstSFI CTRYAG 5 cut(s) 606, 693, 1065, 1479, 1953
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 231, 2051
BstXI CCANNNNNNTGG 3 cut(s) 1020, 1188, 1356
BsuRI GGCC 6 cut(s) 169, 616, 1024, 1192, 1360, 1465
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 8 cut(s) 27, 481, 487, 527, 652, 859, 1851, 1986
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 168, 176
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 66, 1527, 2016
CviAII CATG 1 cut(s) 1511
CviQI GTAC 3 cut(s) 66, 1527, 2016
DdeI CTNAG 4 cut(s) 1440, 1652, 1676, 1874
DpnI GATC 2 cut(s) 8, 53
DpnII GATC 2 cut(s) 6, 51
EaeI YGGCCR 4 cut(s) 1022, 1190, 1358, 1463
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 6 cut(s) 285, 717, 837, 1110, 1263, 1592
Eco47I GGWCC 1 cut(s) 176
Eco72I CACGTG 1 cut(s) 2010
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 1465
FaeI CATG 1 cut(s) 1514
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 1510
FauI CCCGC 2 cut(s) 154, 249
FbaI TGATCA 2 cut(s) 6, 51
Fnu4HI GCNGC 2 cut(s) 245, 2040
FokI GGATG 8 cut(s) 34, 468, 474, 514, 639, 846, 1858, 1993
Fsp4HI GCNGC 2 cut(s) 245, 2040
FspBI CTAG 3 cut(s) 1421, 1730, 2024
GlaI GCGC 1 cut(s) 819
GluI GCNGC 2 cut(s) 245, 2040
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 6 cut(s) 169, 616, 1024, 1192, 1360, 1465
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 567
HhaI GCGC 1 cut(s) 820
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 1 cut(s) 1514
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 1 cut(s) 1870
HpaII CCGG 1 cut(s) 440
HphI GGTGA 8 cut(s) 40, 46, 122, 243, 351, 402, 765, 1943
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 1677, 1777, 1875
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 561
HpyCH4III ACNGT 4 cut(s) 1526, 1594, 1746, 1781
HpyCH4IV ACGT 1 cut(s) 2009
HpyCH4V TGCA 3 cut(s) 1955, 1986, 2039
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 469, 1574
HpyF3I CTNAG 4 cut(s) 1440, 1652, 1676, 1874
HpySE526I ACGT 1 cut(s) 2009
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 1 cut(s) 1514
HspAI GCGC 1 cut(s) 818
Ksp22I TGATCA 2 cut(s) 6, 51
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 6, 51
LmnI GCTCC 2 cut(s) 448, 1813
Lsp1109I GCAGC 2 cut(s) 231, 2051
MaeI CTAG 3 cut(s) 1421, 1730, 2024
MaeII ACGT 1 cut(s) 2009
MaeIII GTNAC 2 cut(s) 1542, 1906
MalI GATC 2 cut(s) 8, 53
MboI GATC 2 cut(s) 6, 51
MboII GAAGA 6 cut(s) 371, 399, 560, 963, 1131, 1358
MfeI CAATTG 1 cut(s) 2056
MlsI TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
MluNI TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
MmeI TCCRAC 1 cut(s) 1903
Mox20I TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
MroXI GAANNNNTTC 1 cut(s) 1637
MscI TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
MseI TTAA 2 cut(s) 1725, 1947
MslI CAYNNNNRTG 2 cut(s) 1018, 1186
Msp20I TGGCCA 4 cut(s) 1024, 1192, 1360, 1465
MspA1I CMGCKG 3 cut(s) 149, 244, 1764
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 1467
MunI CAATTG 1 cut(s) 2056
MvaI CCWGG 1 cut(s) 1467
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 160, 469, 1574
NdeII GATC 2 cut(s) 6, 51
NlaIII CATG 1 cut(s) 1514
NlaIV GGNNCC 4 cut(s) 153, 178, 444, 1821
NmuCI GTSAC 1 cut(s) 1906
PdmI GAANNNNTTC 1 cut(s) 1637
PfeI GAWTC 1 cut(s) 1870
PkrI GCNGC 2 cut(s) 246, 2041
PmaCI CACGTG 1 cut(s) 2010
PmlI CACGTG 1 cut(s) 2010
Ppu21I YACGTR 1 cut(s) 2010
PpuMI RGGWCCY 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 1465
PspCI CACGTG 1 cut(s) 2010
PspGI CCWGG 1 cut(s) 1465
PspN4I GGNNCC 4 cut(s) 153, 178, 444, 1821
PspPI GGNCC 2 cut(s) 168, 176
PspPPI RGGWCCY 1 cut(s) 176
PstI CTGCAG 1 cut(s) 1957
RsaI GTAC 3 cut(s) 67, 1528, 2017
RsaNI GTAC 3 cut(s) 66, 1527, 2016
RseI CAYNNNNRTG 2 cut(s) 1018, 1186
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 1725, 1947
SatI GCNGC 2 cut(s) 245, 2040
Sau3AI GATC 2 cut(s) 6, 51
Sau96I GGNCC 2 cut(s) 168, 176
ScrFI CCNGG 1 cut(s) 1467
SfcI CTRYAG 5 cut(s) 606, 693, 1065, 1479, 1953
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 1018, 1186
SspI AATATT 1 cut(s) 261
SspMI CTAG 3 cut(s) 1421, 1730, 2024
StyD4I CCNGG 1 cut(s) 1465
TaaI ACNGT 4 cut(s) 1526, 1594, 1746, 1781
TaiI ACGT 1 cut(s) 2012
TaqI TCGA 4 cut(s) 556, 1018, 1186, 1354
TatI WGTACW 1 cut(s) 65
TfiI GAWTC 1 cut(s) 1870
Tru1I TTAA 2 cut(s) 1725, 1947
Tru9I TTAA 2 cut(s) 1725, 1947
TseFI GTSAC 1 cut(s) 1906
TseI GCWGC 2 cut(s) 244, 2039
Tsp45I GTSAC 1 cut(s) 1906
TspDTI ATGAA 9 cut(s) 38, 306, 357, 516, 951, 1119, 1287, 1371, 1847
TspGWI ACGGA 3 cut(s) 59, 173, 1696
VpaK11BI GGWCC 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 1623
XmnI GAANNNNTTC 1 cut(s) 1637
XspI CTAG 3 cut(s) 1421, 1730, 2024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.