Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0019725

Physical Location & Seq

Genomic Coordinates Reverse (-)

3584459 .. 3584839

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTTATCATGGACAAAACGCAGATCCTAATCTCCGTTTTGATTCTTGGGCTGTTTAGTTCTGCAAAGTGCAGCAGCCATGGAAGTGGAGTAGGAAGAGTTGTAAACAAAGAAGAAGAAGCCGACAGGATTGTGGGACTTCCCGGACAACCCAAGGTTTCGTTTCAGCAGTTTTCAGGATACGTGACAGTAAATCAACATGTTGGGAGATCCCTCTTTTACTGGCTCACTGAGGCTGCCCACAATCCCTTGTCAAAGCCGCTGGTTGTTTGGCTCAATGGAGGTAATTCTAAACCACTTATCTTCAATATATGTTTAGGGTTTACATCTATAGTTACGGCGATTAATTCTAAAGTTCGAGACAATATCAGCGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

127

Amino Acids

13.7

Weight (kDa)

9.06

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	48 - 95	6.8e-15	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019725)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04560
pyrus_communis	pycom111g05600
rosa_chinensis	RchiOBHm_Chr5g0037401
rosa_roxburghii	Rroxscaffold_2G00140170
rosa_rugosa	Rorug04G0089900
rosa_samantha	Rh1BG408000 Rh1DG439100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	19, 204
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	19, 204
ApeKI	GCWGC	3 cut(s)	72, 75, 236
AseI	ATTAAT	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	84, 87, 223
BceAI	ACGGC	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	4 cut(s)	73, 76, 237, 260
BlsI	GCNGC	4 cut(s)	74, 77, 238, 261
Bme1390I	CCNGG	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	79, 153
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	79, 153
BseJI	GATNNNNATC	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	84, 87, 223
BsgI	GTGCAG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	24, 209
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	223
BspPI	GGATC	2 cut(s)	19, 204
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	79, 153
BssMI	GATC	2 cut(s)	24, 209
BssT1I	CCWWGG	2 cut(s)	79, 153
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	27, 212
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	24, 209
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	84, 87, 223
BstX2I	RGATCY	2 cut(s)	24, 209
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	2 cut(s)	24, 209
BsuI	GTATCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	228
CviAII	CATG	3 cut(s)	10, 80, 200
CviJI	RGCY	7 cut(s)	52, 78, 122, 226, 236, 259, 274
CviKI_1	RGCY	7 cut(s)	52, 78, 122, 226, 236, 259, 274
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	26, 211
DpnII	GATC	2 cut(s)	24, 209
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	79, 153
EcoT14I	CCWWGG	2 cut(s)	79, 153
ErhI	CCWWGG	2 cut(s)	79, 153
FaeI	CATG	3 cut(s)	13, 83, 203
FaiI	YATR	6 cut(s)	11, 81, 201, 311, 313, 332
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	9, 79, 199
Fnu4HI	GCNGC	4 cut(s)	73, 76, 237, 260
Fsp4HI	GCNGC	4 cut(s)	73, 76, 237, 260
GluI	GCNGC	4 cut(s)	73, 76, 237, 260
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	3 cut(s)	13, 83, 203
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	106, 324
Hpy188III	TCNNGA	2 cut(s)	177, 359
Hpy8I	GTNNAC	2 cut(s)	106, 324
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	65, 72
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	13, 83, 203
Kzo9I	GATC	2 cut(s)	24, 209
LpnPI	CCDG	5 cut(s)	112, 157, 162, 208, 248
Lsp1109I	GCAGC	3 cut(s)	84, 87, 223
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	184, 334
MalI	GATC	2 cut(s)	26, 211
MboI	GATC	2 cut(s)	24, 209
MboII	GAAGA	4 cut(s)	108, 125, 128, 295
MflI	RGATCY	2 cut(s)	24, 209
MluCI	AATT	2 cut(s)	286, 346
MnlI	CCTC	3 cut(s)	224, 226, 275
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
NciI	CCSGG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	24, 209
NlaIII	CATG	3 cut(s)	13, 83, 203
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	74, 77, 238, 261
Ppu21I	YACGTR	1 cut(s)	184
PscI	ACATGT	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	345
PsuI	RGATCY	2 cut(s)	24, 209
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	73, 76, 237, 260
Sau3AI	GATC	2 cut(s)	24, 209
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	3 cut(s)	159, 186, 286
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	286, 346
SsiI	CCGC	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	79, 153
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	358
TasI	AATT	2 cut(s)	286, 346
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	72, 75, 236
Tsp45I	GTSAC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	345
XceI	RCATGY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.