Rroxscaffold_2G00140170

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019725
Physical Location & Seq
Forward (+)
78419608 .. 78423167
3560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140170.1

Sequence Viewer

Length: 768 bp
ATGGCTAGGAACCTCGTCTTTTCGTTCCACTGTAGAACAGTCTCCAGGAGTAGCAGGCATTTGCCCGTCTCTCTTGGAATTGACATTGACAAATACAGTTCGCTTTCGCTGCTGCCTAGGGATGTCTTTAATGAATTGGTCTGCTCCCAATCTCTCACTCATGATTCTCTCCAGGCTTTTAGAGATTGTGCTCTTGAGGATGTTGGTTTGGGCGAATACCCTTCTGTGAATGATAGTTGGATGGATGCCATCTGTTCACAAGGTTCATCTCTACTATCTCTTGATCTTTCTGGTTCCGAGGTCTTTCAAAATTTGAAATGCTTGAGTTTTAAAAGGAGCAGTGCAATTAGTGCTGAAGGGATGCGCGCTTTCTCCAGCCTTTTAAACTTAGAAAAGTTGGACTTGCAGAGGTGTCCAGAGATTCATGGTGGCTTTGTTCATCTTAAAAGGTTTGACGAAACTAAAATTCAGTTGCTCGGTTTTCTTTTCTGCATGGCAGGCTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACGTCTGCATGTTTGGAGTCTATTTCAGCTCTTGTTGCCCTGGCTTACTTAAATCTCAACAGATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGGTTTGTACTCTTGAAGAATTTGGAGTTGTCTGATACTGAAGTTTTAAGCAATGGGATTCGTCATCTCTCAGGTATGGATATTGATGTACTTTATTCTGCAGTTCCTTTGGATGCAAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

255

Amino Acids

28.14

Weight (kDa)

5.23

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04560
pyrus_communis pycom111g05600
rosa_chinensis RchiOBHm_Chr5g0037401
rosa_roxburghii Rroxscaffold_2G00140170
rosa_rugosa Rorug04G0089900
rosa_samantha Rh1BG408000 Rh1DG439100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 366
AcsI RAATTY 3 cut(s) 310, 465, 661
AcuI CTGAAG 2 cut(s) 375, 702
AfaI GTAC 2 cut(s) 651, 732
AgsI TTSAA 4 cut(s) 308, 316, 523, 658
AjnI CCWGG 3 cut(s) 44, 171, 582
AluBI AGCT 2 cut(s) 511, 572
AluI AGCT 2 cut(s) 511, 572
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 46, 73
ApeKI GCWGC 2 cut(s) 109, 112
ApoI RAATTY 3 cut(s) 310, 465, 661
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 2 cut(s) 366, 368
AvrII CCTAGG 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 96, 99
BccI CCATC 2 cut(s) 235, 257
BciT130I CCWGG 3 cut(s) 46, 173, 584
BcoDI GTCTC 2 cut(s) 46, 73
BfaI CTAG 2 cut(s) 6, 117
BfmI CTRYAG 2 cut(s) 31, 741
BisI GCNGC 2 cut(s) 110, 113
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 2 cut(s) 111, 114
Bme1390I CCNGG 3 cut(s) 46, 173, 584
BmiI GGNNCC 2 cut(s) 11, 295
BmrFI CCNGG 3 cut(s) 46, 173, 584
BmsI GCATC 5 cut(s) 235, 351, 524, 596, 745
BpmI CTGGAG 3 cut(s) 28, 155, 358
BpuEI CTTGAG 2 cut(s) 215, 343
BsaJI CCNNGG 3 cut(s) 116, 297, 582
Bse3DI GCAATG 2 cut(s) 544, 700
BseBI CCWGG 3 cut(s) 46, 173, 584
BseDI CCNNGG 3 cut(s) 116, 297, 582
BseGI GGATG 8 cut(s) 127, 205, 246, 250, 366, 539, 632, 760
BseMI GCAATG 2 cut(s) 544, 700
BseMII CTCAG 1 cut(s) 726
BsePI GCGCGC 1 cut(s) 364
BseXI GCAGC 2 cut(s) 96, 99
Bsh1236I CGCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 46, 73
BsmBI CGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 725
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 11, 295
BspMAI CTGCAG 1 cut(s) 745
BsrDI GCAATG 2 cut(s) 544, 700
BssECI CCNNGG 3 cut(s) 116, 297, 582
BssHII GCGCGC 1 cut(s) 364
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 3 cut(s) 46, 173, 584
Bst4CI ACNGT 3 cut(s) 32, 40, 98
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 56, 366, 499, 503
BstDEI CTNAG 3 cut(s) 388, 526, 712
BstF5I GGATG 8 cut(s) 127, 205, 246, 250, 366, 539, 632, 760
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 2 cut(s) 366, 368
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 46, 73
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 4 cut(s) 109, 350, 498, 578
BstNI CCWGG 3 cut(s) 46, 173, 584
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 3 cut(s) 44, 171, 582
BstSFI CTRYAG 2 cut(s) 31, 741
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 96, 99
BtsCI GGATG 8 cut(s) 127, 205, 246, 250, 366, 539, 632, 760
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 28, 346
Cac8I GCNNGC 4 cut(s) 56, 366, 499, 503
CciI TCATGA 1 cut(s) 160
CfoI GCGC 2 cut(s) 366, 368
Csp6I GTAC 2 cut(s) 650, 731
CviAII CATG 4 cut(s) 161, 425, 493, 552
CviJI RGCY 8 cut(s) 5, 176, 378, 432, 501, 511, 572, 587
CviKI_1 RGCY 8 cut(s) 5, 176, 378, 432, 501, 511, 572, 587
CviQI GTAC 2 cut(s) 650, 731
DdeI CTNAG 3 cut(s) 388, 526, 712
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraI TTTAAA 2 cut(s) 331, 384
Eco130I CCWWGG 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 375, 702
EcoRII CCWGG 3 cut(s) 44, 171, 582
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 4 cut(s) 164, 428, 496, 555
FaiI YATR 6 cut(s) 162, 426, 494, 518, 553, 719
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 4 cut(s) 160, 424, 492, 551
Fnu4HI GCNGC 2 cut(s) 110, 113
FokI GGATG 7 cut(s) 134, 212, 253, 257, 373, 546, 639
Fsp4HI GCNGC 2 cut(s) 110, 113
FspBI CTAG 2 cut(s) 6, 117
GlaI GCGC 2 cut(s) 365, 367
GluI GCNGC 2 cut(s) 110, 113
GsuI CTGGAG 3 cut(s) 28, 155, 358
HhaI GCGC 2 cut(s) 366, 368
Hin1II CATG 4 cut(s) 164, 428, 496, 555
Hin6I GCGC 2 cut(s) 364, 366
HinP1I GCGC 2 cut(s) 364, 366
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 4 cut(s) 164, 421, 560, 700
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 298, 619, 676
Hpy188III TCNNGA 5 cut(s) 161, 194, 281, 416, 655
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 231, 350, 617
HpyCH4III ACNGT 3 cut(s) 32, 40, 98
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 9 cut(s) 344, 406, 492, 505, 537, 551, 609, 743, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 350, 498, 578
HpyF3I CTNAG 3 cut(s) 388, 526, 712
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 164, 428, 496, 555
HspAI GCGC 2 cut(s) 364, 366
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 149, 336
Lsp1109I GCAGC 2 cut(s) 96, 99
LweI GCATC 5 cut(s) 235, 351, 524, 596, 745
MaeI CTAG 2 cut(s) 6, 117
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 541
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 6 cut(s) 78, 134, 310, 345, 465, 661
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 2 cut(s) 218, 378
MnlI CCTC 5 cut(s) 23, 190, 292, 402, 523
MseI TTAA 7 cut(s) 129, 330, 383, 444, 513, 593, 689
MspR9I CCNGG 3 cut(s) 46, 173, 584
MvaI CCWGG 3 cut(s) 46, 173, 584
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 4 cut(s) 109, 350, 498, 578
NdeII GATC 1 cut(s) 283
NlaIII CATG 4 cut(s) 164, 428, 496, 555
NlaIV GGNNCC 2 cut(s) 11, 295
NspI RCATGY 1 cut(s) 555
PagI TCATGA 1 cut(s) 160
PauI GCGCGC 1 cut(s) 364
PfeI GAWTC 3 cut(s) 164, 421, 700
PfoI TCCNGGA 1 cut(s) 44
PkrI GCNGC 2 cut(s) 111, 114
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp6I CCWGG 3 cut(s) 44, 171, 582
PspGI CCWGG 3 cut(s) 44, 171, 582
PspN4I GGNNCC 2 cut(s) 11, 295
PstI CTGCAG 1 cut(s) 745
PteI GCGCGC 1 cut(s) 364
RsaI GTAC 2 cut(s) 651, 732
RsaNI GTAC 2 cut(s) 650, 731
SaqAI TTAA 7 cut(s) 129, 330, 383, 444, 513, 593, 689
SatI GCNGC 2 cut(s) 110, 113
Sau3AI GATC 1 cut(s) 283
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 3 cut(s) 46, 173, 584
SduI GDGCHC 1 cut(s) 193
SetI ASST 9 cut(s) 15, 265, 303, 413, 452, 513, 548, 574, 718
SfaNI GCATC 5 cut(s) 235, 351, 524, 596, 745
SfcI CTRYAG 2 cut(s) 31, 741
SmlI CTYRAG 2 cut(s) 194, 322
SmoI CTYRAG 2 cut(s) 194, 322
Sse9I AATT 6 cut(s) 78, 134, 310, 345, 465, 661
SspMI CTAG 2 cut(s) 6, 117
StyD4I CCNGG 3 cut(s) 44, 171, 582
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 3 cut(s) 32, 40, 98
TaiI ACGT 1 cut(s) 548
TasI AATT 6 cut(s) 78, 134, 310, 345, 465, 661
TatI WGTACW 2 cut(s) 649, 730
TfiI GAWTC 3 cut(s) 164, 421, 700
Tru1I TTAA 7 cut(s) 129, 330, 383, 444, 513, 593, 689
Tru9I TTAA 7 cut(s) 129, 330, 383, 444, 513, 593, 689
TscAI CASTG 2 cut(s) 35, 346
TseI GCWGC 2 cut(s) 109, 112
TspDTI ATGAA 5 cut(s) 147, 255, 413, 428, 636
TspRI CASTG 2 cut(s) 35, 346
XapI RAATTY 3 cut(s) 310, 465, 661
XceI RCATGY 1 cut(s) 555
XmaJI CCTAGG 1 cut(s) 116
XspI CTAG 2 cut(s) 6, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.