pycom11g05050

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0021275
Physical Location & Seq
Forward (+)
3923334 .. 3923984
651 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05050.2

Sequence Viewer

Length: 432 bp
ATGGCTTTTATCTCACACTATATCAGATTCTGCTTCTTTGTGCTTTTATTCCTGTTTAGGATATCGTCTGCCCAATTATCCTCCCAATACTACTCGACAACGTGCCCTCGAGCCCTTTCCATTGTTCGGAATGCAGTTGTTAATGCAGTGGTGAAGGAGCATCGCATGGGGGCATCCTTACTCCGTCTCCATTTCCACGATTGCTTTGTCAATGGATGTGATGCATCTGTTCTATTAGATGACACTGCAAATTTTACTGGGGAAAAGACGGCGCCACCAAATACAAACTCATTGAGGGGATTTGAAGTGATCGATACCATAAAATCTCAGCTAGAAGGTGCCTGCCCCGGGGTTGTTTCCTGCGCAGATATCCTTGCCATTGCAGCTCGCGATTCAGTTGTTTCAGTAAGTAACATAAAATGCATAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

144

Amino Acids

15.6

Weight (kDa)

7.6

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021275)

Species Orthologous Gene IDs
pyrus_communis pycom11g05050
rosa_multiflora Rmu_co8450017.1_g000001
rosa_samantha Rh4CG453600 Rh5BG494300 Rh5DG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 364
AccB1I GGYRCC 2 cut(s) 271, 338
AccII CGCG 1 cut(s) 390
AcsI RAATTY 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 126, 348
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 331, 386
AluI AGCT 2 cut(s) 331, 386
Alw26I GTCTC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 2 cut(s) 108, 347
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 2 cut(s) 274, 365
AsuC2I CCSGG 2 cut(s) 348, 349
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 2 cut(s) 108, 347
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 2 cut(s) 271, 338
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 285
BcnI CCSGG 2 cut(s) 348, 349
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 348, 349
BmeT110I CYCGRG 2 cut(s) 108, 347
BmiI GGNNCC 2 cut(s) 273, 340
BmrFI CCNGG 2 cut(s) 348, 349
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 4 cut(s) 169, 182, 211, 233
BmuI ACTGGG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 348, 349
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 346, 347, 348
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 348
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 346, 347, 348
BseGI GGATG 2 cut(s) 173, 221
BseLI CCNNNNNNNGG 2 cut(s) 126, 348
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 390
BshNI GGYRCC 2 cut(s) 271, 338
BshVI ATCGAT 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 108, 347
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 126, 348
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 136
BsoBI CYCGRG 2 cut(s) 108, 347
Bsp1286I GDGCHC 2 cut(s) 107, 115
Bsp143I GATC 1 cut(s) 309
Bsp68I TCGCGA 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 273, 340
BspT107I GGYRCC 2 cut(s) 271, 338
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 346, 347, 348
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 343, 388
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 173, 221
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 274, 365
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 346, 347
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 395
Bsu15I ATCGAT 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 173, 221
BtsI GCAGTG 2 cut(s) 153, 243
BtsIMutI CAGTG 2 cut(s) 153, 243
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 343, 388
CaiI CAGNNNCTG 1 cut(s) 30
CfoI GCGC 2 cut(s) 274, 365
Cfr9I CCCGGG 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 312
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 5, 113, 331, 386
CviKI_1 RGCY 4 cut(s) 5, 113, 331, 386
DdeI CTNAG 1 cut(s) 327
DinI GGCGCC 1 cut(s) 273
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 115
Eco32I GATATC 2 cut(s) 63, 370
Eco88I CYCGRG 2 cut(s) 108, 347
EcoRV GATATC 2 cut(s) 63, 370
EcoT22I ATGCAT 2 cut(s) 226, 425
EcoT38I GRGCYC 1 cut(s) 115
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 21, 167, 320, 416, 425
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 2 cut(s) 160, 228
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 332
FspI TGCGCA 1 cut(s) 364
GlaI GCGC 2 cut(s) 273, 364
GluI GCNGC 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 275
HapII CCGG 1 cut(s) 348
HhaI GCGC 2 cut(s) 274, 365
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 2 cut(s) 272, 363
HinP1I GCGC 2 cut(s) 272, 363
HinfI GANTC 2 cut(s) 27, 392
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 26, 129
Hpy188III TCNNGA 1 cut(s) 389
HpyAV CCTTC 2 cut(s) 148, 329
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 6 cut(s) 134, 146, 224, 248, 383, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 2 cut(s) 272, 363
KasI GGCGCC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 65, 243, 355, 361, 373
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 4 cut(s) 169, 182, 211, 233
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 107, 115
MluCI AATT 2 cut(s) 74, 250
Mly113I GGCGCC 1 cut(s) 272
MnlI CCTC 3 cut(s) 91, 117, 288
Mph1103I ATGCAT 2 cut(s) 226, 425
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 348, 349
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 383
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 2 cut(s) 348, 349
NdeII GATC 1 cut(s) 309
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 273, 340
NruI TCGCGA 1 cut(s) 390
NsbI TGCGCA 1 cut(s) 364
NsiI ATGCAT 2 cut(s) 226, 425
PaeR7I CTCGAG 1 cut(s) 108
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 27, 392
PkrI GCNGC 1 cut(s) 385
PluTI GGCGCC 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 273, 340
PspXI VCTCGAGB 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 30
RruI TCGCGA 1 cut(s) 390
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 1 cut(s) 309
ScrFI CCNGG 2 cut(s) 348, 349
SduI GDGCHC 2 cut(s) 107, 115
SetI ASST 4 cut(s) 104, 333, 340, 388
SfaNI GCATC 4 cut(s) 169, 182, 211, 233
SfoI GGCGCC 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 108
SmaI CCCGGG 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 2 cut(s) 74, 250
SspDI GGCGCC 1 cut(s) 271
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 346, 347
TaiI ACGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 95, 109, 312
TasI AATT 2 cut(s) 74, 250
TfiI GAWTC 2 cut(s) 27, 392
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 2 cut(s) 153, 250
TseI GCWGC 1 cut(s) 383
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 347
TspRI CASTG 2 cut(s) 153, 250
XapI RAATTY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 108
XmaI CCCGGG 1 cut(s) 347
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 2 cut(s) 226, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.