Rh5DG505500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0021275
Physical Location & Seq
Forward (+)
79083434 .. 79084499
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG505500.1

Sequence Viewer

Length: 579 bp
ATGGCTTTTACCTCACAGAACAACAGCTTCTGCTTCTTGGTGCTTTTGTTTTTGTTTAGCATAGCTTCAGCACAATTGTCCTCAGATTACTATACAACAAGATGCCCGAAAGCCCTTTCTACAGTTCGGACTGCAGTTATTAATGCAGTGGTGAAGGAGCATCGCATGGGGGCATCCTTGCTCCGTCTCCATTTTCACGATTGCTTTGTTAATGGATGTGATGCATCTGTTCTATTAGATGACACTGCAAATTTTACTGGGGAGAAAACAGCTTTACCAAATTTGAACTCTATAAGAGGATTTGAAGTGATTGATACTATAAAATCTCAACTGGAAAGCATCTGCCCCGGGGTTGTTTCCTGTGCAGACATCCTTGCCATTGCAGCCCGTGATTCAGTTGTTTCATTGGGAGGGCCTTCGTGGATCGTTCAGTTAGGCAGAAGAGATTCCACCACAGCAAGTTTAAGTACTGCAAATACTGATCTCCCATCTCCAAGCCTAGATGTTAATGACCTCATCTCTGCCTTCTCGAATAAAGGCTTTAGTGCCAAAGATTTGGTAGCTCTCTCAGGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

192

Amino Acids

20.46

Weight (kDa)

5.5

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 191 1.3e-55 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021275)

Species Orthologous Gene IDs
pyrus_communis pycom11g05050
rosa_multiflora Rmu_co8450017.1_g000001
rosa_samantha Rh4CG453600 Rh5BG494300 Rh5DG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 2 cut(s) 250, 280
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 469
AgsI TTSAA 2 cut(s) 286, 305
AluBI AGCT 4 cut(s) 27, 65, 272, 563
AluI AGCT 4 cut(s) 27, 65, 272, 563
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 250, 280
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 2 cut(s) 348, 349
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 347
BbvI GCAGC 1 cut(s) 395
BccI CCATC 1 cut(s) 496
BcnI CCSGG 2 cut(s) 348, 349
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 2 cut(s) 120, 132
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 348, 349
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 2 cut(s) 348, 349
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
BmuI ACTGGG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 348, 349
BsaJI CCNNGG 3 cut(s) 346, 347, 348
Bse1I ACTGG 2 cut(s) 262, 336
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 346, 347, 348
BseGI GGATG 3 cut(s) 173, 221, 369
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 262, 336
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 2 cut(s) 423, 481
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 262, 336
BssECI CCNNGG 3 cut(s) 346, 347, 348
BssMI GATC 2 cut(s) 423, 481
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 82, 568
BstF5I GGATG 3 cut(s) 173, 221, 369
BstKTI GATC 2 cut(s) 426, 484
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 423, 481
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 346, 347
BstSFI CTRYAG 2 cut(s) 120, 132
BstV1I GCAGC 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 556
BsuRI GGCC 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 3 cut(s) 173, 221, 369
BtsI GCAGTG 2 cut(s) 153, 243
BtsIMutI CAGTG 2 cut(s) 153, 243
CaiI CAGNNNCTG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 347
Csp6I GTAC 1 cut(s) 468
CviAII CATG 1 cut(s) 166
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 82, 568
DpnI GATC 2 cut(s) 425, 483
DpnII GATC 2 cut(s) 423, 481
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 413
EcoT22I ATGCAT 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 62, 93, 167, 293, 320
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 3 cut(s) 160, 228, 356
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 500
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 348
Hin1II CATG 1 cut(s) 169
HinfI GANTC 2 cut(s) 392, 446
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 85, 129
Hpy188III TCNNGA 2 cut(s) 197, 529
HpyAV CCTTC 3 cut(s) 148, 426, 535
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 7 cut(s) 134, 146, 224, 248, 365, 383, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 82, 568
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 423, 481
LmnI GCTCC 2 cut(s) 157, 186
LpnPI CCDG 5 cut(s) 243, 317, 361, 373, 555
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
MaeI CTAG 1 cut(s) 500
MalI GATC 2 cut(s) 425, 483
MboI GATC 2 cut(s) 423, 481
MboII GAAGA 1 cut(s) 453
MfeI CAATTG 1 cut(s) 74
MluCI AATT 3 cut(s) 74, 250, 280
MnlI CCTC 5 cut(s) 22, 91, 290, 404, 524
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 4 cut(s) 141, 210, 464, 507
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 348, 349
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 2 cut(s) 348, 349
NdeII GATC 2 cut(s) 423, 481
NlaIII CATG 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 392, 446
PkrI GCNGC 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 141
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 141, 210, 464, 507
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 423, 481
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 2 cut(s) 348, 349
SetI ASST 7 cut(s) 14, 29, 67, 274, 516, 565, 574
SfaNI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
SfcI CTRYAG 2 cut(s) 120, 132
SmaI CCCGGG 1 cut(s) 349
Sse9I AATT 3 cut(s) 74, 250, 280
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 346, 347
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 530
TasI AATT 3 cut(s) 74, 250, 280
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 2 cut(s) 392, 446
Tru1I TTAA 4 cut(s) 141, 210, 464, 507
Tru9I TTAA 4 cut(s) 141, 210, 464, 507
TscAI CASTG 2 cut(s) 153, 250
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 347
TspRI CASTG 2 cut(s) 153, 250
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 2 cut(s) 250, 280
XmaI CCCGGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 500
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.