Rh4CG453600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0021275
Physical Location & Seq
Forward (+)
68649621 .. 68650170
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG453600.1

Sequence Viewer

Length: 468 bp
ATGAAGTACTTCAGCTCTAATGCAAATGTCGCCTCTGTTGCACTGCTGTTGTTGCTTGCCTTGATGAGCACAACCACCTCTGCTCAGCTCTCCTCGACATTTTATGACAAAGCCTGTCCAAATGCTCTCGCTACGATCAGAAAATCAATAAGAACAGCAGTCTCAGCAGAACGTCGGATGGCAGCCTCCCTAATCCGCCTGCATTTCCATGATTGCTTTGTTCAGGGTTGTGATGCATCAATCTTACTTGACGATACTTCTTCTATCACAGGCGAAAAGAACGCACTGCCTAATCAGAACTCTGTGAGAGGATATGGAGTCATAGATAATGCCAAATCTGAAGTGGAGAAACTATGTCCTGGTGTAGTTTCTTGTGCAGATATCGTCGCCGTGGCTGCTAGGGATGCTTCAGTTGCCGTGAGTTACTTGATCATTTCAGTTTTTCATTTTTTTTTCATCAACTTCTAG

Protein Analysis

155

Amino Acids

16.66

Weight (kDa)

7.64

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 140 1.3e-33 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0021275)

Species Orthologous Gene IDs
pyrus_communis pycom11g05050
rosa_multiflora Rmu_co8450017.1_g000001
rosa_samantha Rh4CG453600 Rh5BG494300 Rh5DG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AcuI CTGAAG 2 cut(s) 360, 393
AfaI GTAC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 15, 88
AluI AGCT 2 cut(s) 15, 88
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 182, 395
Asp700I GAANNNNTTC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 194, 382
BccI CCATC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 374, 401
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 399, 466
BisI GCNGC 2 cut(s) 183, 396
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 2 cut(s) 184, 397
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 3 cut(s) 223, 245, 394
Bpu1102I GCTNAGC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 183, 409
BseMII CTCAG 2 cut(s) 98, 177
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 194, 382
BsgI GTGCAG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 135, 429
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 97, 176
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 135, 429
Bst2UI CCWGG 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 57, 200
BstDEI CTNAG 2 cut(s) 84, 163
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 183, 409
BstKTI GATC 2 cut(s) 138, 432
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 135, 429
BstMWI GCNNNNNNNGC 7 cut(s) 29, 38, 52, 164, 395, 404, 413
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 194, 382
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 183, 409
BtsI GCAGTG 2 cut(s) 41, 284
BtsIMutI CAGTG 2 cut(s) 41, 284
Cac8I GCNNGC 2 cut(s) 57, 200
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 15, 88, 113, 185, 395
CviKI_1 RGCY 5 cut(s) 15, 88, 113, 185, 395
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 84, 163
DpnI GATC 2 cut(s) 137, 431
DpnII GATC 2 cut(s) 135, 429
EciI GGCGGA 1 cut(s) 185
Eco32I GATATC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 360, 393
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 105, 210, 315, 323, 355
FatI CATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 183, 396
FokI GGATG 2 cut(s) 190, 416
Fsp4HI GCNGC 2 cut(s) 183, 396
FspBI CTAG 2 cut(s) 399, 466
GluI GCNGC 2 cut(s) 183, 396
Hin1II CATG 1 cut(s) 212
HinfI GANTC 1 cut(s) 318
Hpy188I TCNGA 4 cut(s) 140, 177, 297, 340
Hpy99I CGWCG 2 cut(s) 177, 389
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 5 cut(s) 23, 41, 202, 236, 377
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 38, 52, 164, 395, 404, 413
HpyF3I CTNAG 2 cut(s) 84, 163
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 2 cut(s) 135, 429
LpnPI CCDG 6 cut(s) 127, 209, 212, 255, 345, 372
Lsp1109I GCAGC 2 cut(s) 194, 382
LweI GCATC 3 cut(s) 223, 245, 394
MaeI CTAG 2 cut(s) 399, 466
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 422
MalI GATC 2 cut(s) 137, 431
MboI GATC 2 cut(s) 135, 429
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 71
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 5 cut(s) 43, 88, 103, 196, 302
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 7 cut(s) 29, 38, 52, 164, 395, 404, 413
NdeII GATC 2 cut(s) 135, 429
NlaIII CATG 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 184, 397
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 2 cut(s) 183, 396
Sau3AI GATC 2 cut(s) 135, 429
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 17, 80, 90, 175
SfaNI GCATC 3 cut(s) 223, 245, 394
SmiMI CAYNNNNRTG 1 cut(s) 207
SsiI CCGC 1 cut(s) 196
SspMI CTAG 2 cut(s) 399, 466
StyD4I CCNGG 1 cut(s) 358
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 95
TatI WGTACW 1 cut(s) 6
TscAI CASTG 2 cut(s) 48, 291
TseI GCWGC 2 cut(s) 182, 395
TspDTI ATGAA 3 cut(s) 17, 434, 445
TspRI CASTG 2 cut(s) 48, 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 399, 466
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.