pycom11g05320

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
4105768 .. 4108784
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
ATGCCTTTTATCTCCCTCTTCAAGTCCAAAGTACAAACCCAGAAAATGCCCCCAAATCTCTGCACACTCCTCTTCCTCCTGGCGACCACCTTCTCCACCTGCGGATCCATAGGCGTGAACTGGGGTACGACGGCGTCGCACCCACTACCGCCGACCAAGGTGGTGGAGCTGCTGAAGTCCAACAATGTCACCAAGGTCAAGCTGTTCGACGCCGACCCAGGCGTCCTCGGAGCGCTTTCTGGGTCCAAGCTTAGCGTCACTGTGGGCATTCCCAATGCATTGCTTAAATCCCTCAACTCTTCCAAGAAGGCTGCCGAGAGTTGGGTACATGACAATGTCACTCGCTACGTCTCCAACGGCGGCGGCGGCGGCGTTAAAATTGAGTATGTTGCTGTTGGAGATGAGTCATTTCTGCAGGGTTATGGTGAACAATTTCACCCATTCGTCATAGGAGCAGCAATGAATGTTCACACAGCTTTGGCCCGAGCAAAATTGGAGAGCAATGTGAAAGTAGTGGTGCCTTGTAGTTTTGATTCCTTCCTGTCAGAGTCTGGCCATCCTTCGAAAGGACACTTTCGGGCTGACCTCAATAGAACCATGATTGAACTGCTCACGTTTCTCAGCAAGCACAATTCACCATTCTTTGCAACCATTTCCCCGTTCATAAGTCTCCGCCAGAACAAAAACATTTCCCTCGACTTCACTCTATTTAAAGATAATGCAAAACCTCATAACGATAGCCGCAAAACATACAAAAACAGCTTTGACTTGAGCTATGACACCTTGGTTACTGCTTTGTCAAAAGTAGGATTTCCTAAGATGGAAATTGTTGTGTCACAGATTGGTTGGCCTACAGATGGAGCAGCAAATGCAACCACTTCCACTGCAGAGACATTCATGAAAGGCCTGATGGCGCACCTTCGCAGCAAATCGGGAACCCCACTCAGACCTCGGAATCCTCCGAGCGAAACATATGTTTTTAGCCTCTTAGATGAGGACCAAAGAAGCATAAGCACTGGAAATTTTGAGAGACATTGGGGTGTCTTCACTTTTGATGGTCAAGCCAAGTACCGTTTTGATTTCATCCAAGGTTCGAAAAATCTCGTGGACGCACAGAATGTGGAGTACCTTCCGGCTAAGTGGTGCGTGGTGAACAATAACAGGGACTTATCTAATGCAACTGCTAGTGCTTCAGAGGCATGTTCGCATGCCGATTGCAGTGCAATGTCTCCTGGCGGGTCTTGCTCCAATATCAGTTGGCCTGGCAATATCTCATATGCATTTAACAGCTACTATCAGCAGCATAACCAGAGTGCAGATAGCTGTGACTTTGGTGGCTTGGGTTTAATCACAACTGTCAATCCATCCGTGGATAATTGCAGGTTCTCGGTTCAGCTACGCACTTCTCTTTCAGATTCCCTCCGCCCGGACTACCTTTCCCTGTGGATGACCTTGCTAGTGACAACCCTTTTGTTATCTTTACCCCGATTTACATAG

Protein Analysis

499

Amino Acids

54.42

Weight (kDa)

8.71

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 37 - 361 1.7e-63 Glycosyl hydrolases family 17
X8 PF07983 380 - 448 3.7e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
AasI GACNNNNNNGTC 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 107, 1371
AccB1I GGYRCC 1 cut(s) 517
AclWI GGATC 2 cut(s) 99, 112
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 1021
AcuI CTGAAG 2 cut(s) 194, 1176
AcyI GRCGYC 3 cut(s) 134, 210, 222
AfaI GTAC 5 cut(s) 33, 127, 327, 1070, 1127
AfeI AGCGCT 1 cut(s) 234
AfiI CCNNNNNNNGG 4 cut(s) 321, 566, 857, 1426
AgsI TTSAA 2 cut(s) 22, 605
AjnI CCWGG 4 cut(s) 78, 217, 1231, 1261
AluBI AGCT 9 cut(s) 169, 202, 250, 476, 762, 774, 1290, 1323, 1396
AluI AGCT 9 cut(s) 169, 202, 250, 476, 762, 774, 1290, 1323, 1396
Alw26I GTCTC 5 cut(s) 355, 674, 884, 1024, 1233
AlwI GGATC 2 cut(s) 99, 112
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 483
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 5 cut(s) 480, 553, 848, 904, 1259
ApeKI GCWGC 6 cut(s) 169, 311, 455, 863, 924, 1300
ApoI RAATTY 1 cut(s) 1021
ArsI GACNNNNNNTTYG 2 cut(s) 1453, 1485
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 235, 916
AspS9I GGNCC 3 cut(s) 243, 481, 997
AsuC2I CCSGG 1 cut(s) 1427
AsuHPI GGTGA 5 cut(s) 181, 428, 437, 627, 1162
AsuII TTCGAA 2 cut(s) 563, 1094
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 2 cut(s) 243, 997
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 1 cut(s) 1103
BbsI GAAGAC 1 cut(s) 1036
BbvI GCAGC 6 cut(s) 156, 298, 467, 875, 936, 1312
BccI CCATC 6 cut(s) 564, 814, 851, 904, 1049, 1372
BceAI ACGGC 2 cut(s) 147, 373
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 4 cut(s) 80, 219, 1233, 1263
BcnI CCSGG 1 cut(s) 1427
BcoDI GTCTC 5 cut(s) 355, 674, 884, 1024, 1233
BfaI CTAG 2 cut(s) 1185, 1457
BfmI CTRYAG 3 cut(s) 413, 852, 885
BfoI RGCGCY 1 cut(s) 236
BfuAI ACCTGC 2 cut(s) 107, 1371
BlpI GCTNAGC 1 cut(s) 251
Bme1390I CCNGG 5 cut(s) 80, 219, 1233, 1263, 1427
Bme18I GGWCC 2 cut(s) 243, 997
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 243, 481, 997
BmiI GGNNCC 4 cut(s) 106, 244, 519, 937
BmrFI CCNGG 5 cut(s) 80, 219, 1233, 1263, 1427
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 1036
Bpu1102I GCTNAGC 1 cut(s) 251
Bpu14I TTCGAA 2 cut(s) 563, 1094
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 1 cut(s) 1427
BsaHI GRCGYC 3 cut(s) 134, 210, 222
BsaJI CCNNGG 8 cut(s) 156, 192, 217, 226, 783, 950, 1087, 1368
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 566, 857, 1426
Bse1I ACTGG 2 cut(s) 125, 1021
Bse3DI GCAATG 4 cut(s) 278, 465, 508, 1230
BseBI CCWGG 4 cut(s) 80, 219, 1233, 1263
BseDI CCNNGG 8 cut(s) 156, 192, 217, 226, 783, 950, 1087, 1368
BseGI GGATG 4 cut(s) 556, 1083, 1364, 1452
BseLI CCNNNNNNNGG 4 cut(s) 321, 566, 857, 1426
BseMI GCAATG 4 cut(s) 278, 465, 508, 1230
BseMII CTCAG 2 cut(s) 634, 958
BseNI ACTGG 2 cut(s) 125, 1021
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 6 cut(s) 156, 298, 467, 875, 936, 1312
BsgI GTGCAG 2 cut(s) 46, 1335
BshFI GGCC 5 cut(s) 482, 555, 850, 906, 1261
BshNI GGYRCC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 2 cut(s) 1133, 1427
BslFI GGGAC 1 cut(s) 1178
BslI CCNNNNNNNGG 4 cut(s) 321, 566, 857, 1426
BsmAI GTCTC 5 cut(s) 355, 674, 884, 1024, 1233
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 1178
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 5 cut(s) 482, 555, 850, 906, 1261
BsoBI CYCGRG 1 cut(s) 483
Bsp119I TTCGAA 2 cut(s) 563, 1094
Bsp143I GATC 1 cut(s) 104
Bsp1720I GCTNAGC 1 cut(s) 251
BspANI GGCC 5 cut(s) 482, 555, 850, 906, 1261
BspCNI CTCAG 2 cut(s) 633, 957
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 4 cut(s) 106, 244, 519, 937
BspMAI CTGCAG 2 cut(s) 417, 889
BspMI ACCTGC 2 cut(s) 107, 1371
BspPI GGATC 2 cut(s) 99, 112
BspT104I TTCGAA 2 cut(s) 563, 1094
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 4 cut(s) 278, 465, 508, 1230
BsrI ACTGG 2 cut(s) 125, 1021
BssECI CCNNGG 8 cut(s) 156, 192, 217, 226, 783, 950, 1087, 1368
BssMI GATC 1 cut(s) 104
BssNI GRCGYC 3 cut(s) 134, 210, 222
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 4 cut(s) 156, 192, 783, 1087
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 4 cut(s) 80, 219, 1233, 1263
Bst4CI ACNGT 3 cut(s) 262, 1073, 1357
Bst6I CTCTTC 3 cut(s) 23, 77, 304
BstACI GRCGYC 3 cut(s) 134, 210, 222
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBI TTCGAA 2 cut(s) 563, 1094
BstC8I GCNNGC 2 cut(s) 626, 1209
BstDEI CTNAG 6 cut(s) 251, 620, 816, 944, 988, 1137
BstDSI CCRYGG 1 cut(s) 1368
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 4 cut(s) 556, 1083, 1364, 1452
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 235, 916
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 5 cut(s) 355, 674, 884, 1024, 1233
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 5 cut(s) 366, 369, 869, 1196, 1242
BstNI CCWGG 4 cut(s) 80, 219, 1233, 1263
BstNSI RCATGY 2 cut(s) 1203, 1211
BstSCI CCNGG 5 cut(s) 78, 217, 1231, 1261, 1425
BstSFI CTRYAG 3 cut(s) 413, 852, 885
BstV1I GCAGC 6 cut(s) 156, 298, 467, 875, 936, 1312
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 5 cut(s) 482, 555, 850, 906, 1261
BtgI CCRYGG 1 cut(s) 1368
BtsCI GGATG 4 cut(s) 556, 1083, 1364, 1452
BtsI GCAGTG 2 cut(s) 882, 1225
BtsIMutI CAGTG 4 cut(s) 258, 882, 1014, 1225
BveI ACCTGC 2 cut(s) 107, 1371
Cac8I GCNNGC 2 cut(s) 626, 1209
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 897
CfoI GCGC 2 cut(s) 235, 916
Cfr13I GGNCC 3 cut(s) 243, 481, 997
CseI GACGC 5 cut(s) 123, 211, 218, 244, 1118
Csp6I GTAC 5 cut(s) 32, 126, 326, 1069, 1126
CviAII CATG 5 cut(s) 329, 598, 898, 1200, 1208
CviQI GTAC 5 cut(s) 32, 126, 326, 1069, 1126
DdeI CTNAG 6 cut(s) 251, 620, 816, 944, 988, 1137
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
DraI TTTAAA 1 cut(s) 712
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 3 cut(s) 23, 77, 304
EarI CTCTTC 3 cut(s) 23, 77, 304
EciI GGCGGA 2 cut(s) 662, 1412
Eco130I CCWWGG 4 cut(s) 156, 192, 783, 1087
Eco147I AGGCCT 1 cut(s) 906
Eco47I GGWCC 2 cut(s) 243, 997
Eco47III AGCGCT 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 194, 1176
Eco88I CYCGRG 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoRII CCWGG 4 cut(s) 78, 217, 1231, 1261
EcoT14I CCWWGG 4 cut(s) 156, 192, 783, 1087
EcoT22I ATGCAT 2 cut(s) 280, 1282
ErhI CCWWGG 4 cut(s) 156, 192, 783, 1087
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 5 cut(s) 332, 601, 901, 1203, 1211
FaqI GGGAC 1 cut(s) 1178
FatI CATG 5 cut(s) 328, 597, 897, 1199, 1207
FauI CCCGC 1 cut(s) 1229
FauNDI CATATG 2 cut(s) 973, 1276
FokI GGATG 4 cut(s) 543, 1070, 1351, 1459
FspBI CTAG 2 cut(s) 1185, 1457
GlaI GCGC 2 cut(s) 234, 915
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 5 cut(s) 482, 555, 850, 906, 1261
HapII CCGG 2 cut(s) 1133, 1427
HgaI GACGC 5 cut(s) 123, 211, 218, 244, 1118
HhaI GCGC 2 cut(s) 235, 916
Hin1I GRCGYC 3 cut(s) 134, 210, 222
Hin1II CATG 5 cut(s) 332, 601, 901, 1203, 1211
Hin6I GCGC 2 cut(s) 233, 914
HinP1I GCGC 2 cut(s) 233, 914
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 5 cut(s) 404, 533, 548, 955, 1415
HpaII CCGG 2 cut(s) 1133, 1427
HphI GGTGA 5 cut(s) 181, 428, 437, 627, 1162
Hpy166II GTNNAC 5 cut(s) 118, 428, 469, 1108, 1153
Hpy188I TCNGA 7 cut(s) 230, 547, 947, 954, 963, 1195, 1414
Hpy188III TCNNGA 2 cut(s) 898, 933
Hpy8I GTNNAC 5 cut(s) 118, 428, 469, 1108, 1153
Hpy99I CGWCG 3 cut(s) 133, 139, 212
HpyAV CCTTC 6 cut(s) 100, 301, 547, 570, 929, 1139
HpyCH4III ACNGT 3 cut(s) 262, 1073, 1357
HpyCH4IV ACGT 2 cut(s) 348, 614
HpyF10VI GCNNNNNNNGC 5 cut(s) 366, 369, 869, 1196, 1242
HpyF3I CTNAG 6 cut(s) 251, 620, 816, 944, 988, 1137
HpySE526I ACGT 2 cut(s) 348, 614
Hsp92I GRCGYC 3 cut(s) 134, 210, 222
Hsp92II CATG 5 cut(s) 332, 601, 901, 1203, 1211
HspAI GCGC 2 cut(s) 233, 914
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 5 cut(s) 166, 230, 452, 860, 1250
Lsp1109I GCAGC 6 cut(s) 156, 298, 467, 875, 936, 1312
MaeI CTAG 2 cut(s) 1185, 1457
MaeII ACGT 2 cut(s) 348, 614
MaeIII GTNAC 7 cut(s) 187, 256, 337, 787, 834, 1325, 1459
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 4 cut(s) 10, 64, 291, 1036
MflI RGATCY 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 7 cut(s) 378, 431, 491, 631, 825, 1021, 1375
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 413, 557
MmeI TCCRAC 3 cut(s) 204, 376, 378
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 2 cut(s) 280, 1282
MroXI GAANNNNTTC 1 cut(s) 432
MscI TGGCCA 1 cut(s) 555
MseI TTAA 5 cut(s) 285, 375, 711, 1284, 1346
MslI CAYNNNNRTG 3 cut(s) 113, 333, 1038
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 2 cut(s) 1133, 1427
MspR9I CCNGG 5 cut(s) 80, 219, 1233, 1263, 1427
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 4 cut(s) 80, 219, 1233, 1263
MwoI GCNNNNNNNGC 5 cut(s) 366, 369, 869, 1196, 1242
NciI CCSGG 1 cut(s) 1427
NdeI CATATG 2 cut(s) 973, 1276
NdeII GATC 1 cut(s) 104
NlaIII CATG 5 cut(s) 332, 601, 901, 1203, 1211
NlaIV GGNNCC 4 cut(s) 106, 244, 519, 937
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 6 cut(s) 187, 256, 337, 834, 1325, 1459
NsiI ATGCAT 2 cut(s) 280, 1282
NspI RCATGY 2 cut(s) 1203, 1211
NspV TTCGAA 2 cut(s) 563, 1094
PaeI GCATGC 1 cut(s) 1211
PagI TCATGA 1 cut(s) 897
PaqCI CACCTGC 1 cut(s) 107
PceI AGGCCT 1 cut(s) 906
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 3 cut(s) 533, 955, 1415
PflFI GACNNNGTC 2 cut(s) 133, 335
PleI GAGTC 2 cut(s) 412, 556
PpsI GAGTC 2 cut(s) 412, 556
Psp6I CCWGG 4 cut(s) 78, 217, 1231, 1261
PspGI CCWGG 4 cut(s) 78, 217, 1231, 1261
PspN4I GGNNCC 4 cut(s) 106, 244, 519, 937
PspPI GGNCC 3 cut(s) 243, 481, 997
PstI CTGCAG 2 cut(s) 417, 889
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 2 cut(s) 133, 335
RsaI GTAC 5 cut(s) 33, 127, 327, 1070, 1127
RsaNI GTAC 5 cut(s) 32, 126, 326, 1069, 1126
RseI CAYNNNNRTG 3 cut(s) 113, 333, 1038
SaqAI TTAA 5 cut(s) 285, 375, 711, 1284, 1346
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 3 cut(s) 243, 481, 997
SchI GAGTC 2 cut(s) 413, 557
ScrFI CCNGG 5 cut(s) 80, 219, 1233, 1263, 1427
SfcI CTRYAG 3 cut(s) 413, 852, 885
SfuI TTCGAA 2 cut(s) 563, 1094
SinI GGWCC 2 cut(s) 243, 997
SmiMI CAYNNNNRTG 3 cut(s) 113, 333, 1038
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
SphI GCATGC 1 cut(s) 1211
Sse9I AATT 7 cut(s) 378, 431, 491, 631, 825, 1021, 1375
SseBI AGGCCT 1 cut(s) 906
SspMI CTAG 2 cut(s) 1185, 1457
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 5 cut(s) 78, 217, 1231, 1261, 1425
StyI CCWWGG 4 cut(s) 156, 192, 783, 1087
TaaI ACNGT 3 cut(s) 262, 1073, 1357
TaiI ACGT 2 cut(s) 351, 617
TaqI TCGA 4 cut(s) 207, 563, 696, 1094
TasI AATT 7 cut(s) 378, 431, 491, 631, 825, 1021, 1375
TatI WGTACW 1 cut(s) 31
TauI GCSGC 5 cut(s) 363, 366, 369, 372, 744
TfiI GAWTC 3 cut(s) 533, 955, 1415
Tru1I TTAA 5 cut(s) 285, 375, 711, 1284, 1346
Tru9I TTAA 5 cut(s) 285, 375, 711, 1284, 1346
TscAI CASTG 4 cut(s) 265, 889, 1021, 1225
TseFI GTSAC 6 cut(s) 187, 256, 337, 834, 1325, 1459
TseI GCWGC 6 cut(s) 169, 311, 455, 863, 924, 1300
Tsp45I GTSAC 6 cut(s) 187, 256, 337, 834, 1325, 1459
TspDTI ATGAA 5 cut(s) 476, 652, 886, 914, 1072
TspGWI ACGGA 1 cut(s) 1357
TspRI CASTG 4 cut(s) 265, 889, 1021, 1225
Tth111I GACNNNGTC 2 cut(s) 133, 335
VpaK11BI GGWCC 2 cut(s) 243, 997
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 1 cut(s) 1021
XceI RCATGY 2 cut(s) 1203, 1211
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 2 cut(s) 1185, 1457
Zsp2I ATGCAT 2 cut(s) 280, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.