Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0021276

Physical Location & Seq

Genomic Coordinates Reverse (-)

4907315 .. 4907515

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTTGATATGTATGTGAAATGTGGGAGCATTGAGGAAGCGAAAGGATTGTTTGATAGGATGCCGGAGAAGGATATTTTCTCATGGACTGCAATGCTTGATGGGTATGCTCAGTCAGGAAATTATGATGAGGCTTGTTGGGTTTTCGCTGCAATGCCTGGTCAAGACATTGCTGCATGGAATGTCCTCATTTCGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

67

Amino Acids

7.39

Weight (kDa)

4.07

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	27 - 54	2.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021276)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06450
rosa_chinensis	RchiOBHm_Chr4g0389951
rosa_roxburghii	Rroxscaffold_1G00046390 Rroxscaffold_7G00187080
rosa_samantha	Rh1CG250000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	149, 173
BbvI	GCAGC	2 cut(s)	136, 160
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	150, 174
BlsI	GCNGC	2 cut(s)	151, 175
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	51
Bse3DI	GCAATG	3 cut(s)	99, 159, 168
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	3 cut(s)	99, 159, 168
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	136, 160
BsiSI	CCGG	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	124
BsrDI	GCAATG	3 cut(s)	99, 159, 168
Bst2UI	CCWGG	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	136, 160
BtsCI	GGATG	1 cut(s)	66
CviAII	CATG	2 cut(s)	84, 177
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	87, 180
FaiI	YATR	6 cut(s)	11, 15, 85, 108, 126, 178
FatI	CATG	2 cut(s)	83, 176
Fnu4HI	GCNGC	2 cut(s)	150, 174
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	150, 174
GluI	GCNGC	2 cut(s)	150, 174
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	87, 180
HpaII	CCGG	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	117, 164
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	92, 152, 176
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	87, 180
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	78, 102, 144, 171
Lsp1109I	GCAGC	2 cut(s)	136, 160
LweI	GCATC	1 cut(s)	51
MluCI	AATT	1 cut(s)	121
MnlI	CCTC	3 cut(s)	28, 124, 197
MseI	TTAA	1 cut(s)	199
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NlaIII	CATG	2 cut(s)	87, 180
PkrI	GCNGC	2 cut(s)	151, 175
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	199
SatI	GCNGC	2 cut(s)	150, 174
ScrFI	CCNGG	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	51
Sse9I	AATT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	157
TasI	AATT	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	199
Tru9I	TTAA	1 cut(s)	199
TseI	GCWGC	2 cut(s)	149, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.