Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0021276

Physical Location & Seq

Genomic Coordinates Reverse (-)

26459885 .. 26473124

Gene Structure 13240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATATGGCAGCTAAATCCGAGATGCAAACTACTATTAGTTATCGGGAAGAATGGCTACCTCGTGGAGGGGGTTGTCCACCTCCCCGAAACCTTCCGGTCAAGCTCGATTTGCGGGGATCCGCTTCGCATTAGTGGTGGGTGGGTTAAGCTCGATTCGCAGGATCCGATTCAAATCGGGGGTGGTGGTGGTAGTGGGAAGAAGAGGAGGGAAGGGTATGACCGTTATGGGTTCGGTGGTGGGTGGGTTGCGACGATTGTGTTCTCGCAGGTGATAGGTCTCCACGGAGAAGAAGGTTTGGGTGCCCGAGAGAAAATTCGGGTACCGTGTATCGGCGCGTGGGCCATTTTCCGACTTGACGAACTGCTTCAGAGTTCAGAGACAAAAGAAAAGGAAAGAAAACAGAACAATGTTCTTCATTTTACCTATTCTGGGAGAAAACTTCAAAACCGGGATGAATTGGTGAAGCCCGAAGGTGTTCGATCAAATTCACGAGAGAGATGGTTTTGCATGGACTACGGTGGTTTCTTCTCATACTCGTGTAGCCATGTAAGGAATATGATTTCAACAAGAACATTGTTCGATGAGATGATAGAAAGGTGTCCAGCTACTTGGAATACTATGATCGACGACTATGTGAGACTTGGTAATGTGGAATCTGCAGTTTTGTTGTTTAATCAAATGCCCATAAGGGATTTGATCTCGTGGACAATGATGATCAATTGTTATTCTCGAACAAGATATTTGGAGAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

252

Amino Acids

28.84

Weight (kDa)

8.95

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	204 - 229	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021276)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06450
rosa_chinensis	RchiOBHm_Chr4g0389951
rosa_roxburghii	Rroxscaffold_1G00046390 Rroxscaffold_7G00187080
rosa_samantha	Rh1CG250000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	2 cut(s)	302, 322
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	114, 122
AclWI	GGATC	4 cut(s)	113, 126, 158, 171
AcsI	RAATTY	2 cut(s)	315, 487
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	67, 332, 432
AgsI	TTSAA	3 cut(s)	173, 446, 567
AluBI	AGCT	4 cut(s)	13, 105, 151, 608
AluI	AGCT	4 cut(s)	13, 105, 151, 608
Alw26I	GTCTC	3 cut(s)	284, 374, 634
AlwI	GGATC	4 cut(s)	113, 126, 158, 171
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	315, 487
Asp700I	GAANNNNTTC	2 cut(s)	366, 477
Asp718I	GGTACC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	283, 475
AvaI	CYCGRG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	2 cut(s)	118, 163
BanI	GGYRCC	2 cut(s)	302, 322
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BauI	CACGAG	4 cut(s)	62, 492, 538, 703
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	3 cut(s)	284, 374, 634
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	4 cut(s)	120, 165, 304, 324
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 332, 432
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	67, 332, 432
BseRI	GAGGAG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	302, 322
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	97, 451
BslI	CCNNNNNNNGG	3 cut(s)	67, 332, 432
BsmAI	GTCTC	3 cut(s)	284, 374, 634
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
BspACI	CCGC	2 cut(s)	114, 122
BspANI	GGCC	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	4 cut(s)	120, 165, 304, 324
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	4 cut(s)	113, 126, 158, 171
BspT107I	GGYRCC	2 cut(s)	302, 322
BspTNI	GGTCTC	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
BssSI	CACGAG	4 cut(s)	62, 492, 538, 703
Bst2BI	CACGAG	4 cut(s)	62, 492, 538, 703
Bst4CI	ACNGT	3 cut(s)	224, 327, 521
Bst6I	CTCTTC	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	6 cut(s)	121, 166, 485, 627, 702, 720
BstMAI	GTCTC	3 cut(s)	284, 374, 634
BstMBI	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 157
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	118, 163
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstYI	RGATCY	2 cut(s)	118, 163
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	460
BveI	ACCTGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	2 cut(s)	511, 548
CviJI	RGCY	8 cut(s)	13, 57, 105, 151, 344, 469, 546, 608
CviKI_1	RGCY	8 cut(s)	13, 57, 105, 151, 344, 469, 546, 608
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	6 cut(s)	120, 165, 484, 626, 701, 719
DpnII	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	514, 551
FatI	CATG	2 cut(s)	510, 547
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	11
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	97, 451
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	514, 551
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	155, 169, 656
HpaII	CCGG	2 cut(s)	97, 451
HphI	GGTGA	2 cut(s)	283, 475
Hpy166II	GTNNAC	2 cut(s)	79, 708
Hpy188I	TCNGA	5 cut(s)	21, 168, 353, 372, 379
Hpy188III	TCNNGA	3 cut(s)	46, 492, 732
Hpy8I	GTNNAC	2 cut(s)	79, 708
Hpy99I	CGWCG	2 cut(s)	256, 632
HpyAV	CCTTC	4 cut(s)	103, 206, 287, 467
HpyCH4III	ACNGT	3 cut(s)	224, 327, 521
HpyCH4V	TGCA	3 cut(s)	27, 510, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 157
Hsp92II	CATG	2 cut(s)	514, 551
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
LpnPI	CCDG	6 cut(s)	110, 146, 254, 417, 464, 618
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	14
MalI	GATC	6 cut(s)	120, 165, 484, 626, 701, 719
MboI	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
MboII	GAAGA	6 cut(s)	61, 211, 214, 302, 407, 520
MfeI	CAATTG	1 cut(s)	721
MflI	RGATCY	2 cut(s)	118, 163
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	4 cut(s)	315, 458, 487, 721
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	61, 71, 92, 198, 201
MroXI	GAANNNNTTC	2 cut(s)	366, 477
MseI	TTAA	2 cut(s)	147, 675
MslI	CAYNNNNRTG	1 cut(s)	538
MspI	CCGG	2 cut(s)	97, 451
MspR9I	CCNGG	1 cut(s)	452
MunI	CAATTG	1 cut(s)	721
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	111, 157
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
NlaIII	CATG	2 cut(s)	514, 551
NlaIV	GGNNCC	4 cut(s)	120, 165, 304, 324
PaqCI	CACCTGC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdmI	GAANNNNTTC	2 cut(s)	366, 477
PfeI	GAWTC	3 cut(s)	155, 169, 656
PkrI	GCNGC	1 cut(s)	12
PspN4I	GGNNCC	4 cut(s)	120, 165, 304, 324
PspPI	GGNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	118, 163
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	147, 675
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	6 cut(s)	118, 163, 482, 624, 699, 717
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	538
Sse9I	AATT	4 cut(s)	315, 458, 487, 721
SsiI	CCGC	2 cut(s)	114, 122
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	224, 327, 521
TaqI	TCGA	6 cut(s)	107, 153, 481, 582, 627, 733
TasI	AATT	4 cut(s)	315, 458, 487, 721
TfiI	GAWTC	3 cut(s)	155, 169, 656
Tru1I	TTAA	2 cut(s)	147, 675
Tru9I	TTAA	2 cut(s)	147, 675
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	407, 471
TspGWI	ACGGA	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	315, 487
XmnI	GAANNNNTTC	2 cut(s)	366, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.