Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0021276

Physical Location & Seq

Genomic Coordinates Reverse (-)

65583098 .. 65583941

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTCGAACTATGCGGCCTAACTCACGGTTTGCAATTGCCATGTCTTTCTTTCTTTCTTCTTCTTCTTCTTCGAATTGCTGCATCATCAAACCAAGGACAAAGCGCTGTCTCGACTTCATGCCTTATTTTCGCCCACCGGTGAACCCAAGCCCGAACCCGGCCCACAACCCCGTCCGGATGCGCCCGCTCACGGAGGACGAATTGGTGAAGCCCGAAGGTGTTCGATCAAATGCCCGAGAGAGATGGTTTTTCGTGGACTACGGTGGTTTCTTCTCATACTCGTGTAGCCGTGTAGGGAATATGATTTCAGCAAGAACATTGTTCAATGAGATGATAGAAAGGTGTCCAGCTACTTGGAATACTATGATCGACGGCTATGTGAGACTTGGTAATGTGGGGTCTGCAGTTAATCAAATGCCCATCGGTGATTTGATCTCGTGGACATCGATGATCAATTGTTATTCTCGAACAAGATATTTGGAGAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

164

Amino Acids

18.86

Weight (kDa)

9.64

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021276)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06450
rosa_chinensis	RchiOBHm_Chr4g0389951
rosa_roxburghii	Rroxscaffold_1G00046390 Rroxscaffold_7G00187080
rosa_samantha	Rh1CG250000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	2 cut(s)	16, 188
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	160, 193
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	116, 379
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	107
AoxI	GGCC	2 cut(s)	17, 162
ApeKI	GCWGC	1 cut(s)	81
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	108, 186
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	154, 220, 440
AsuII	TTCGAA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	237
BauI	CACGAG	2 cut(s)	283, 439
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	240, 431
BceAI	ACGGC	2 cut(s)	276, 391
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	116, 379
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	2 cut(s)	17, 82
BlsI	GCNGC	2 cut(s)	18, 83
Bme1390I	CCNGG	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	93, 171
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	2 cut(s)	139, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 193
Bse118I	RCCGGY	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	160, 193
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	19, 164
BshTI	ACCGGT	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	140, 161, 178
BslI	CCNNNNNNNGG	2 cut(s)	160, 193
BsmAI	GTCTC	2 cut(s)	116, 379
BsnI	GGCC	2 cut(s)	19, 164
BsoBI	CYCGRG	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	74
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	227, 369, 435, 453
BspACI	CCGC	2 cut(s)	16, 188
BspANI	GGCC	2 cut(s)	19, 164
BspDI	ATCGAT	1 cut(s)	449
BspEI	TCCGGA	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	4 cut(s)	227, 369, 435, 453
BssSI	CACGAG	2 cut(s)	283, 439
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	2 cut(s)	283, 439
Bst4CI	ACNGT	2 cut(s)	30, 266
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 186
BstKTI	GATC	4 cut(s)	230, 372, 438, 456
BstMAI	GTCTC	2 cut(s)	116, 379
BstMBI	GATC	4 cut(s)	227, 369, 435, 453
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	19, 164
BsuTUI	ATCGAT	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	2 cut(s)	108, 186
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	449
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	2 cut(s)	43, 121
CviJI	RGCY	8 cut(s)	5, 19, 153, 164, 214, 291, 353, 378
CviKI_1	RGCY	8 cut(s)	5, 19, 153, 164, 214, 291, 353, 378
DpnI	GATC	4 cut(s)	229, 371, 437, 455
DpnII	GATC	4 cut(s)	227, 369, 435, 453
Eco130I	CCWWGG	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	46, 124
FaiI	YATR	7 cut(s)	14, 44, 122, 280, 305, 368, 381
FatI	CATG	2 cut(s)	42, 120
FauI	CCCGC	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	17, 82
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	17, 82
GlaI	GCGC	2 cut(s)	107, 185
GluI	GCNGC	2 cut(s)	17, 82
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	19, 164
HapII	CCGG	3 cut(s)	140, 161, 178
HhaI	GCGC	2 cut(s)	108, 186
Hin1II	CATG	2 cut(s)	46, 124
Hin6I	GCGC	2 cut(s)	106, 184
HinP1I	GCGC	2 cut(s)	106, 184
HpaII	CCGG	3 cut(s)	140, 161, 178
HphI	GGTGA	3 cut(s)	154, 220, 440
Hpy166II	GTNNAC	3 cut(s)	145, 259, 444
Hpy188III	TCNNGA	3 cut(s)	113, 178, 468
Hpy8I	GTNNAC	3 cut(s)	145, 259, 444
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	30, 266
HpyCH4V	TGCA	3 cut(s)	35, 84, 407
Hsp92II	CATG	2 cut(s)	46, 124
HspAI	GCGC	2 cut(s)	106, 184
Kpn2I	TCCGGA	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	227, 369, 435, 453
LpnPI	CCDG	4 cut(s)	153, 174, 191, 363
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	2 cut(s)	93, 171
MalI	GATC	4 cut(s)	229, 371, 437, 455
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	4 cut(s)	227, 369, 435, 453
MboII	GAAGA	6 cut(s)	51, 54, 57, 60, 63, 265
MfeI	CAATTG	2 cut(s)	36, 457
MluCI	AATT	4 cut(s)	36, 76, 203, 457
MnlI	CCTC	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	283
MspI	CCGG	3 cut(s)	140, 161, 178
MspR9I	CCNGG	1 cut(s)	161
MunI	CAATTG	2 cut(s)	36, 457
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	4 cut(s)	227, 369, 435, 453
NlaIII	CATG	2 cut(s)	46, 124
NspV	TTCGAA	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	222
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	18, 83
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	17, 82
Sau3AI	GATC	4 cut(s)	227, 369, 435, 453
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	3 cut(s)	223, 347, 355
SfaNI	GCATC	2 cut(s)	93, 171
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	74
SgrAI	CRCCGGYG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	4 cut(s)	36, 76, 203, 457
SsiI	CCGC	2 cut(s)	16, 188
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	30, 266
TaqI	TCGA	7 cut(s)	7, 74, 114, 226, 372, 449, 469
TasI	AATT	4 cut(s)	36, 76, 203, 457
TauI	GCSGC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.