RchiOBHm_Chr4g0389951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021276
Physical Location & Seq
Reverse (-)
5046087 .. 5047106
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36304

Sequence Viewer

Length: 213 bp
ATGATGGTTATGGGTTCAGTGGTGGGCTGGGTTGCGGCGATTGTGTTGCTGCAGGTGATAGGTCTCCACGGAGAAGAAGGTTTGGGTGCCCAGAGAAAATTCTGGGTACCTGTGTATCGGCGCGTGGGCCATTTTCCGACGTCACAGGATGACTCGGAGGCCGGTGAGTACACTAGTAGTAGAGGTGAGCTGCATGGTGGTGTGAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.63

Weight (kDa)

5.83

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021276)

Species Orthologous Gene IDs
pyrus_communis pycom11g06450
rosa_chinensis RchiOBHm_Chr4g0389951
rosa_roxburghii Rroxscaffold_1G00046390 Rroxscaffold_7G00187080
rosa_samantha Rh1CG250000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 43
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 2 cut(s) 86, 106
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 2 cut(s) 108, 170
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 68, 201
AoxI GGCC 2 cut(s) 127, 159
ApeKI GCWGC 2 cut(s) 49, 190
ApoI RAATTY 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 67, 176, 197
BaeGI GKGCMC 1 cut(s) 91
BaeI ACNNNNGTAYC 4 cut(s) 98, 98, 131, 131
BanI GGYRCC 2 cut(s) 86, 106
BbvI GCAGC 2 cut(s) 36, 177
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcoDI GTCTC 2 cut(s) 68, 201
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 211
BfmI CTRYAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 36, 50, 191
BlsI GCNGC 3 cut(s) 37, 51, 192
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 88, 108
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 36, 177
BseYI CCCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 129, 161
BshNI GGYRCC 2 cut(s) 86, 106
BsiSI CCGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 68, 201
BsnI GGCC 2 cut(s) 129, 161
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 129, 161
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 88, 108
BspMAI CTGCAG 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 43
BspT107I GGYRCC 2 cut(s) 86, 106
BspTNI GGTCTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 123
BstMAI GTCTC 2 cut(s) 68, 201
BstSFI CTRYAG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 36, 177
BsuRI GGCC 2 cut(s) 129, 161
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 107, 169
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 27, 129, 161, 190
CviKI_1 RGCY 4 cut(s) 27, 129, 161, 190
CviQI GTAC 2 cut(s) 107, 169
Eco31I GGTCTC 1 cut(s) 68
FaeI CATG 1 cut(s) 197
FaiI YATR 2 cut(s) 11, 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 36, 50, 191
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 36, 50, 191
FspBI CTAG 2 cut(s) 174, 211
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 36, 50, 191
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 129, 161
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 162
HphI GGTGA 3 cut(s) 67, 176, 197
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 138, 157
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 52, 193
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 110
LpnPI CCDG 7 cut(s) 13, 38, 88, 104, 123, 131, 175
Lsp1109I GCAGC 2 cut(s) 36, 177
MaeI CTAG 2 cut(s) 174, 211
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 141
MboII GAAGA 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 2 cut(s) 151, 176
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 123
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 88, 108
NmuCI GTSAC 1 cut(s) 141
PaqCI CACCTGC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 37, 51, 192
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 88, 108
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 54
RsaI GTAC 2 cut(s) 108, 170
RsaNI GTAC 2 cut(s) 107, 169
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 3 cut(s) 36, 50, 191
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 91
SetI ASST 7 cut(s) 57, 64, 82, 112, 143, 187, 192
SfcI CTRYAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 174, 211
TaiI ACGT 1 cut(s) 143
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 38
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 2 cut(s) 49, 190
Tsp45I GTSAC 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 98
XspI CTAG 2 cut(s) 174, 211
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.