Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0021277

Physical Location & Seq

Genomic Coordinates Reverse (-)

5638833 .. 5639388

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCACAGCTCGAATCCACCGTCAAGACAATCTCCGACACGCCGTCTCCATACGGTAGCCTCCGATCTCAGAAGTGGGCTGTCGTTTCCGTGGTTGTCGGAGGACGGCAAAAATCATATACAAATTTTGTAGTACGAAATCATATGGAGAAAAACAAAAACAAGAATTCACAATCTTCAATCTCCAATACATTTTCTCCATCCGGGAGGTTTTCCCCCATTATCGCAGCAGAAATCAACAAAAGATGTATAAGGACATTTTATCAGCTACTGGTTGGACCACCTTTATTACCTGCCCTAAACAGAGAAACAATTCGATATAAGAATCTCATTCCACAAAACTTCTTCAGTCCGGGCCTAAACAACTGCAAGCAAAAAAATCCCGAAGATACATACTTTCATCCAAATCATCCACCGCCATTAACAAAACCACACCCTATATCTTCCTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

152

Amino Acids

17.07

Weight (kDa)

10.11

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021277)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07420 pycom12g06350 pycom14g06160
rosa_samantha	Rh4AG272800 Rh4BG278500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AciI	CCGC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	124, 166
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	180, 451
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	2 cut(s)	10, 268
AluI	AGCT	2 cut(s)	10, 268
Alw26I	GTCTC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	124, 166
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	278, 355
AsuC2I	CCSGG	2 cut(s)	205, 354
AvaII	GGWCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	2 cut(s)	28, 122
BcnI	CCSGG	2 cut(s)	205, 354
BcoDI	GTCTC	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	205, 354
Bme18I	GGWCC	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	278, 355
BmrFI	CCNGG	2 cut(s)	205, 354
BpuMI	CCSGG	2 cut(s)	205, 354
BsaJI	CCNNGG	1 cut(s)	90
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 181, 211
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	200, 400, 409
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	204, 353
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	22, 56
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	200, 400, 409
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	203, 352
BstV1I	GCAGC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	200, 400, 409
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	278, 355
Csp6I	GTAC	1 cut(s)	134
CviJI	RGCY	5 cut(s)	10, 60, 80, 268, 357
CviKI_1	RGCY	5 cut(s)	10, 60, 80, 268, 357
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	51
FaiI	YATR	9 cut(s)	52, 118, 120, 144, 146, 251, 321, 394, 440
FauNDI	CATATG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	3 cut(s)	187, 387, 396
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	204, 353
HinfI	GANTC	2 cut(s)	14, 325
HpaII	CCGG	2 cut(s)	204, 353
Hpy188I	TCNGA	4 cut(s)	37, 65, 72, 101
Hpy188III	TCNNGA	2 cut(s)	25, 383
HpyCH4III	ACNGT	2 cut(s)	22, 56
HpyCH4V	TGCA	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	65
LpnPI	CCDG	4 cut(s)	217, 257, 306, 366
Lsp1109I	GCAGC	1 cut(s)	239
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	4 cut(s)	168, 337, 398, 435
MluCI	AATT	3 cut(s)	124, 166, 312
MmeI	TCCRAC	3 cut(s)	60, 79, 256
MnlI	CCTC	3 cut(s)	71, 95, 201
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	422
MspI	CCGG	2 cut(s)	204, 353
MspR9I	CCNGG	2 cut(s)	205, 354
NciI	CCSGG	2 cut(s)	205, 354
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	14, 325
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	278, 355
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	2 cut(s)	278, 355
ScrFI	CCNGG	2 cut(s)	205, 354
SetI	ASST	5 cut(s)	12, 212, 270, 286, 295
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	124, 166, 312
SsiI	CCGC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	203, 352
TaaI	ACNGT	2 cut(s)	22, 56
TaqI	TCGA	2 cut(s)	12, 316
TasI	AATT	3 cut(s)	124, 166, 312
TfiI	GAWTC	2 cut(s)	14, 325
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	124, 166
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.