Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0021277

Physical Location & Seq

Genomic Coordinates Forward (+)

6479785 .. 6480369

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTTGTCCAAGAACGCAACGGACCCAAATCCCCAAAATACTCTCACTCCAACTCTAGAGCGTCGCTTTCCTTCGCTCCGAATCTCGATTTCTCCACATGGGTTTCCGAGAATCTGTACAAAATCGTCACCGTCGTGCTTCTGATCGCCACCGTCGCCGCCCTCTTCGTCCTCCGTAACATCGGTGACACCGCCGCCTTGCTCTGCTTCGAGACCCAGGCTCAGAACCTCGAGAAGATTCGGATGCCCCAGCTCGAATCCACCGTCAAGACCATCTCCGACACGTCGTCTCCCTACGCAAACTTCCGATCTGAGAAATGGGTTGTCGTTTCCGTCTCCGATTACCCGTCTGACTCGCTCAAGAAGCTCGTGAAGCTCAAGGGGTGGCAGGTCCTGGCGATTGGGAACTCCAAAACGCCGTCGGATTGGAGCCTCAAAGGTGCTATCTTTCTGTCCCTTGAACAACAAGCTCAATTGGGTGTTAGGGTTTTGGAGTACCTGCCTTATGATTCTTATGTTAGGAAGAGTGTGGGTTACTTGTTTGCGATCCAGCACGGGGCGATTGGAGAAGATCTTCGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

195

Amino Acids

21.71

Weight (kDa)

9.28

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021277)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07420 pycom12g06350 pycom14g06160
rosa_samantha	Rh4AG272800 Rh4BG278500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	379, 507
AciI	CCGC	3 cut(s)	159, 192, 195
AclWI	GGATC	1 cut(s)	541
AfaI	GTAC	2 cut(s)	119, 497
AfiI	CCNNNNNNNGG	1 cut(s)	556
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	461
AhdI	GACNNNNNGTC	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	216, 393
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	4 cut(s)	253, 367, 376, 470
AluI	AGCT	4 cut(s)	253, 367, 376, 470
Alw26I	GTCTC	3 cut(s)	206, 294, 340
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	23, 391
AsuHPI	GGTGA	2 cut(s)	121, 197
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	23, 391
BauI	CACGAG	1 cut(s)	368
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	218, 395
BcoDI	GTCTC	3 cut(s)	206, 294, 340
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	379, 507
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	159, 195
BlsI	GCNGC	2 cut(s)	160, 196
Bme1390I	CCNGG	2 cut(s)	218, 395
Bme18I	GGWCC	2 cut(s)	23, 391
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	23, 391
BmiI	GGNNCC	2 cut(s)	25, 431
BmrFI	CCNGG	2 cut(s)	218, 395
BmsI	GCATC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	344, 362
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	218, 395
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	236, 303
BseYI	CCCAGC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	3 cut(s)	206, 294, 340
BsmBI	CGTCTC	2 cut(s)	294, 340
BsmFI	GGGAC	1 cut(s)	439
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	144, 308, 546, 571
BspACI	CCGC	3 cut(s)	159, 192, 195
BspCNI	CTCAG	2 cut(s)	235, 304
BspLI	GGNNCC	2 cut(s)	25, 431
BspMI	ACCTGC	2 cut(s)	379, 507
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	4 cut(s)	144, 308, 546, 571
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	218, 395
Bst4CI	ACNGT	4 cut(s)	133, 154, 265, 582
Bst6I	CTCTTC	2 cut(s)	170, 518
BstAUI	TGTACA	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	222, 312
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	147, 311, 549, 574
BstMAI	GTCTC	3 cut(s)	206, 294, 340
BstMBI	GATC	4 cut(s)	144, 308, 546, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 364, 373
BstNI	CCWGG	2 cut(s)	218, 395
BstSCI	CCNGG	2 cut(s)	216, 393
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	249
BveI	ACCTGC	2 cut(s)	379, 507
CaiI	CAGNNNCTG	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	23, 391
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	118, 496
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	6 cut(s)	221, 253, 367, 376, 432, 470
CviKI_1	RGCY	6 cut(s)	221, 253, 367, 376, 432, 470
CviQI	GTAC	2 cut(s)	118, 496
DdeI	CTNAG	2 cut(s)	222, 312
DpnI	GATC	4 cut(s)	146, 310, 548, 573
DpnII	GATC	4 cut(s)	144, 308, 546, 571
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	170, 518
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	2 cut(s)	170, 518
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	23, 391
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	216, 393
Esp3I	CGTCTC	2 cut(s)	294, 340
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	100, 507, 516
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	159, 195
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	159, 195
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	159, 195
GsaI	CCCAGC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	6 cut(s)	82, 112, 238, 257, 353, 509
HphI	GGTGA	2 cut(s)	121, 197
Hpy188III	TCNNGA	7 cut(s)	57, 86, 211, 232, 268, 361, 370
Hpy99I	CGWCG	6 cut(s)	67, 137, 158, 289, 424, 582
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	4 cut(s)	133, 154, 265, 582
HpyCH4IV	ACGT	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 364, 373
HpyF3I	CTNAG	2 cut(s)	222, 312
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	144, 308, 546, 571
LmnI	GCTCC	2 cut(s)	82, 429
LpnPI	CCDG	8 cut(s)	203, 230, 263, 374, 380, 407, 512, 563
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	4 cut(s)	127, 176, 185, 533
MalI	GATC	4 cut(s)	146, 310, 548, 573
MboI	GATC	4 cut(s)	144, 308, 546, 571
MboII	GAAGA	5 cut(s)	157, 247, 535, 566, 581
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	571
MluCI	AATT	1 cut(s)	473
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	75, 303, 402
MnlI	CCTC	4 cut(s)	173, 182, 239, 443
MroXI	GAANNNNTTC	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	218, 395
MunI	CAATTG	1 cut(s)	473
MvaI	CCWGG	2 cut(s)	218, 395
MwoI	GCNNNNNNNGC	3 cut(s)	155, 364, 373
NdeII	GATC	4 cut(s)	144, 308, 546, 571
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	2 cut(s)	25, 431
NmuCI	GTSAC	2 cut(s)	127, 185
OliI	CACNNNNGTG	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 261
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	5 cut(s)	82, 112, 238, 257, 509
PkrI	GCNGC	2 cut(s)	160, 196
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	216, 393
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	216, 393
PspN4I	GGNNCC	2 cut(s)	25, 431
PspPI	GGNCC	2 cut(s)	23, 391
PspPPI	RGGWCCY	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	119, 497
RsaNI	GTAC	2 cut(s)	118, 496
RseI	CAYNNNNRTG	1 cut(s)	134
SatI	GCNGC	2 cut(s)	159, 195
Sau3AI	GATC	4 cut(s)	144, 308, 546, 571
Sau96I	GGNCC	2 cut(s)	23, 391
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	218, 395
SetI	ASST	9 cut(s)	231, 255, 287, 369, 378, 393, 442, 472, 501
SfaNI	GCATC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	23, 391
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	3 cut(s)	230, 359, 377
SmoI	CTYRAG	3 cut(s)	230, 359, 377
Sse9I	AATT	1 cut(s)	473
SsiI	CCGC	3 cut(s)	159, 192, 195
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	216, 393
TaaI	ACNGT	4 cut(s)	133, 154, 265, 582
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	5 cut(s)	87, 210, 231, 255, 577
TasI	AATT	1 cut(s)	473
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	161, 197
TfiI	GAWTC	5 cut(s)	82, 112, 238, 257, 509
TseFI	GTSAC	2 cut(s)	127, 185
Tsp45I	GTSAC	2 cut(s)	127, 185
TspGWI	ACGGA	3 cut(s)	36, 164, 322
VpaK11BI	GGWCC	2 cut(s)	23, 391
XbaI	TCTAGA	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.